RNA id: XM_026930549.2


Basic Information

Item Value
RNA id XM_026930549.2
length 4062
RNA type mRNA
GC content 0.44
exon number 13
gene id clpxa
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8550368 ~ 8564908 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTCTCGTCATGTTTATCTCACTCCGGTTTAATCTCAAATTGATTTCCATGGGGCACAAGGTGCACTATATAAGGACACAGAAACCTGTTATTTCaaaccctatgtagtgcactaagaTAGGGAGTAGGACGTCATTTAAGATCCAACCAGGCTAACACAGCTAGTTTAGCCTCCCACCAAGTTAGCATTGCTTTGTCACTGAGAAGAGATTGCTCTTAGCTGCGTGTGCATTTTAAATAACCCATGGACATTTCCTAAAAATAACTGATATCTTATCTTTGCCCCAAACAGAGCAGTTTAGCactagatttattattatttcaccaACTAATTTCCCTTGAAAAGCTTAGGAAGCTAACACAGCTAATTGAATGGTATggtagttagctagttagcgtAGCATTTCAGTATTAGCTAGTTCTTAGCTAGCTGATTTAgcataacaaaaataaaacgaaGCCGGAAAACATGTCCTGTGCATGCACTTCAGCGGCACGACTGCTCATAACTTCAGCCCACAAAGGGTTCTCAGGCTCCAGAGTTCAGCTGCTCTCTCTGAGCCGACCAGTGACTCACGAAATCCGTCTGACACGAAGTGTCCCTGTCAGACCCTTCTCAGAGTCGTCTGTGTATTATGCGTCTAAGGACGGAATCAAAGATGGCGATGGTGGAAAGaaatctgTAAGTGAAGGAAGTGGCAAAAGATCCAGCTCGGGCAACTCGGGGAAGGGTGGCAGTCAGCTTCGTTGCCCCAAATGCGGAGATCCCTGCACACATGTGGAAACATTTGTTTCTTCAACTAGATTTgtcaaatgtgaaaaatgtcatcacTTTTTCGTGGTCCTCTCGGAAACGGACACTAAAAAGAGTCTGAATAAAGATACTGAATCAGCTGCCGAAGCTGTGAAGCTGGCTTTCCAACAGAAACCCCCACCACCCCCCAAGAAGATCTATGCCTATCTCGACAAGTATGTTGTGGGTCAGGCCCATGCAAAGAAGGTGCTCTCGGTGGCTGTGTACAACCACTACAAACGCATTTATAACAACATGCCAGCTGGCTCCAGACAGCACCAGGCAGAGGCAGAGAAGCAGGCCTCTCTCACTCCCAGAGAGCTGCTGCAGATTGCAGGGATCAGCCCCCATGGTAATGCTTTAGGAGCCTCCATGCAGCAGCAGGTTAACCAGCAGGCCCCACaggaaagaagaggaggagatgtGCTTGACTCCCCCCACACTGACATCAAGCTGGAGAAGAGCAACATCGTATTGCTGGGCCCCACAGGCTCTGGTAAAACTCTCTTGGCCCAAACTCTGGCTAAGTGCCTGGATGTCCCTTTTGCGATCTGCGACTGTACTACCCTCACGCAAGCCGGCTACGTGGGTGAGGACATTGAGTCAGTTATTGCCAAGCTGCTGCAGGATGCCAACTATGTTATTGAGAAGGCTCAGCAGGGCATTGTTTTCTTGGATGAAGTTGACAAAATTGGCAGTGTGCCTGGGATCCATCAGTTGAGAGATGTGGGTGGAGAAGGGGTGCAGCAGGGATTACTCAAACTCCTGGAAGGGACTATTGTAAACGTTCCTGAAAAAAACACCAGGAAGCTGAGAGGAGAGACTGTACAAGTTGACACTACGAACATCTTATTTGTAGCATCTGGTGCTTTCAATGGGCTGGATCGTATAATCAGCAGAAGAAAGAACGAGAAGTACCTGGGCTTTGGAGCACCGTCTAGCCTGGGTAAAGGCCGAAGGGCAGCAGCTGCAGCCGATGTGGCCCACATGACGGGTGGAGAGGTGGACGCTGTAGCCGAGATTGAAGAGAAGGACCGGCTCCTGAAGCACGTGGAGGCACGTGACCTCATAGAGTTCGGCATGATACCCGAGTTTGTGGGCCGCCTGCCCGTGGTGGTGCCGCTCCACAGCTTGGATGAGGACACGCTCGTCCGCATCCTGACTGAACCCCGCAACGCTGTTGTGCCCCAGTACCAAGCCCTCTTCAGCATGGACAAGTGTGAACTCTCTGTGAGCACTAATGCTCTGCGGGCTATTGCTAGAATGGCACTTGAACGGAAGACAGGAGCCCGAGGACTTCGATCGATAATGGAGAAGCTGCTACTGGACCCCATGTTTGAAGTCCCTCACTCAGACATCGTAGCCGTGGAAATAAACGAGGACGTGGTACTGGGGAAAACATCACCTCAATACGTAAGAGCCCCGGCTAAAGAGGCAGCAGAGGAGGAGTACGACTCAGGAATAGAAGAAGAGAACTGGACCAGGCTGCAGGTTGATGCAGCCAAGAATTAATACAGTCAAAGTAATCTTGTTTATGCTTCTTGTTTAAGCTCTTAATGATGACCTGTTTCAGTCCGTTAAGTGATTATTCAACACGCAAGTACTTCCGAGGGCTCATGTACAAACAGAAATGCAGCCCTAAATGATCTGTCCTAATTTGTAAGCTGTAAGTTACAGTGTGGTATATTACATATATCCTGAATTTTGTGAAGAAAATTGTGTTTAAGAGAAATGTACTGTATTAACCACGCCTCAGAGTGAGCGActgttaatattaaatgtaaaaaaaaaaaaatattattttattccttactaaatGAATGACGTGTTTGATTTTTATGAACTCTTTTTGAACCAGATAGTTATGGAGATTTAAGGTCATAAGTTCACTTAGAAAGCAAAATCCATATCcagtcatttttctttattaattgaACACGTTGGTCATAATGTCACATGCAACAGTTTAATTATGATAGTTATCAGTCAAGGTACTTTAAACCTTTATACATGTTAGTTGACAGTGCTACATGGCTCTTTTATAGGGAAATGACTCTGTATTGTGGCGCCCCAGATGAGCTTCTTGCCAGAACTACTTTGTAATGAGTTTTTACAGTTCTTTATCAGAGTATCTGCTGCTGTCACTGTTACTCAAGCCGCAGTATTTTTGTGCATGGGTTTATTTTAATGGACTGATTTCAATGAGAAACTAAAGAATGATACTGCTGCCTCGGTGGTCCTTTCTGAGCTGGAATGCTTCTTGCTGTAACACATTACACGGTTACTCCATTTAAATGCAGTCACTTCTGCTCTCTCCTGCTTGCTTGTGTGTATAGTCCACAAGTACAACTCGATTACAGCCTTaaatctctctcttcctcagaACAGTTTGGTGTAGCCCCACTCGTTCtgcaattttattaataaagtgGTGTTACTGGGCCAatatttttttgggggggattaTGATGGCCTTCAGTTTGCACTATCTTGGCTGcttaaattgtgtaaatttctgCTTAGCCTTAACATCGCAGGATATCATTAACATCAATTATTTGTTCTACTTCCTATAGTTACAAATCTAATGCTTGTGAATTTTCCTCTGCAAGCAGGAGGGAGTAACGAGGCTAActtatttaatcatttcatgTGTGGAACGGGAAACCATCAGGCGTTGGGGTGTGTACCGTACATAAATGGTGTAGCTTGATtttctcagtcacacacaccttccaaaCAGCGTATTGCAAGAGCAGATGTATCAGCTACAAGAGCAGTTTTGGTCTAATCCTATTATTAATCTAGTGCTGCAGAATGTAACCTTTATGTTTCAGTTGCCACAAATTATTTTAGACAGCTGATTCTTGATCAAAACTCTTACTCCGAGATGCTTGATGAACTTGAGCCCAGCCTTCATCAGTCTTTTGTAGAATGTCATGTAAATGTATGGATTAATAAAGCTGTCCTTGACTTTCTAATGGGCTCCGGATGAATTTCTCCCAGATCAACATATtgtatcaataaatacattttgctgttacattcatttacatttttgactATATGACTGAAAATACAGCTTTAACATCTGAAAAGGATTTGGAACAATGTAAAAGACATGAAGAGCTTTGTTTGAGAGATTGCCTCTTTCAATCAAAATTCGCAACACTTGCTTCTTTGACATCCTTGatttttctgatgttttatcGGAGGCaaaaacagtgtaaatattgttctcaaataaagaaaatgatcagtttatgtt

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210939 lncRNA downstream 28283 8521801 ~ 8522085 (-) True G178208
TU210754 lncRNA downstream 226204 8323619 ~ 8324164 (-) True G178057
XR_003403692.2 lncRNA downstream 275008 8271107 ~ 8275360 (-) True LOC113536653
TU210491 lncRNA downstream 623310 7926293 ~ 7927058 (-) True G177807
TU210396 lncRNA downstream 799562 7728913 ~ 7750806 (-) True G177733
TU210961 lncRNA upstream 28280 8593186 ~ 8593405 (-) True G178227
TU211159 lncRNA upstream 146271 8711177 ~ 8712118 (-) True G178398
TU211259 lncRNA upstream 418312 8983218 ~ 8984148 (-) False asb7
TU211271 lncRNA upstream 438738 9003644 ~ 9003852 (-) True G178501
TU211458 lncRNA upstream 622165 9187071 ~ 9189914 (-) True G178673
XM_026930326.2 mRNA downstream 757 8544942 ~ 8549611 (-) True pdcd7
XM_026930901.2 mRNA downstream 6393 8534968 ~ 8543975 (-) True ubap1lb
XM_026930815.2 mRNA downstream 20925 8522608 ~ 8529443 (-) True rasl12
XM_026930543.2 mRNA downstream 42038 8491252 ~ 8508330 (-) True abhd2a
XM_026930902.2 mRNA downstream 80936 8453004 ~ 8469432 (-) True LOC113536763
XM_026930613.2 mRNA upstream 7569 8572475 ~ 8589352 (-) False ankdd1a
XM_026930614.2 mRNA upstream 7569 8572475 ~ 8589352 (-) True ankdd1a
XM_026930526.2 mRNA upstream 31274 8596180 ~ 8612306 (-) True plekho2
XM_026930411.2 mRNA upstream 242681 8807587 ~ 8924385 (-) True lrrk1
XM_026930283.2 mRNA upstream 361906 8926812 ~ 8950809 (-) True aldh1a3
trnar-acg_8 other downstream 302606 8247690 ~ 8247762 (-) True trnar-acg_8
trnar-acg_7 other downstream 303593 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-ucg_7 other downstream 305647 8244649 ~ 8244721 (-) True trnar-ucg_7
trnar-acg_5 other downstream 307565 8242731 ~ 8242803 (-) True trnar-acg_5
trnar-acg_4 other downstream 308190 8242106 ~ 8242178 (-) True trnar-acg_4
trnae-uuc_3 other upstream 325721 8890627 ~ 8890698 (-) True trnae-uuc_3
TU211757 other upstream 957510 9522416 ~ 9523330 (-) True G178942
TU211855 other upstream 1248986 9813892 ~ 9815225 (-) True G179035
TU212647 other upstream 2679069 11243975 ~ 11246305 (-) False nppc
TU212749 other upstream 2844186 11409092 ~ 11415440 (-) False G179803

Expression Profile