RNA id: XM_026930552.2


Basic Information

Item Value
RNA id XM_026930552.2
length 3741
RNA type mRNA
GC content 0.42
exon number 10
gene id dpep1
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5465673 ~ 5481287 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTCTGATATTTTCCGCATGTCCATAGTCTGTCTGTCCCAGACACACGCAGAGAGATTGGGAAAGCTGTGGTAAAGCAGGACACAGGAGTAGTTGGACGACATGAGGTGTATCTGGGATGTATGTTTAGTCCTCTTGGCCTTTACGTTTTCCTCCAGAGCAGACATATACAAGGAGCGAGCACTGGGGCTGATGTCCGAGGTGCCACTGATAGATGGacacaatgaTTTACCATGGCAACTGAGGAGCCGGTTTAACAATCAGCTAAACAACGTGGACCTGTTCACACTCAATTCCACGCACACCAACATCCCCAAAATCAAAGACGGCCGCTTAGCAGCACAGTTCTGGGCTGCGTATGTCCCATGTACCACTCAGTATAAAGATGCAGTTAGACACACTCTGGAGCAGATTGATGTTATTCACAGAATGTGCAACAAATATCCCGAAGAGTTCATGTTTGCAGCAAGCAGTCAAGACATACTGGATGCCTTTGCCAACAAGAAGACAGCGAGCCTGATCGGAGTGGAAGGAGGTCACTCTATAGATAGTAGTATGGGGACATTGCGCACTATGTATCAGCTGGGAGTCCGTTATCTGACTCTCACCCACAGCTGTAACACACCCTGGGTGGATAACTGGCTGGTGGATACAGGCTCAGATCCCATAGAGAACAATGGCCTGAGTGACTTTGGCAAGCGGCTGATTCATGAAATGAACCGCATGGGCATGCTGGTGGACCTGGCTCACGTGTCAGAACAGGTGATGAACCAAGTGCTGGAGATCTCCCAAGCCCCCATCATCTTCAGCCACTCTTCTGCCTACAGCGTCTGTCCTCACAAGAGAAATGTTCCAGATTACATCCTCCAGAAAGTGaaaaacaaaaacggGATTGTTATGGTGAATTTCTATAATGACTACGTCACATGTAGCCAAAAGGCAAACCTCTCAGACGTGGCAGATCACTTTGACCACATCAAGAAAGTGGGTGGTTCCAGTATAGTTGGTTTTGGTGGTGATTATGATGGTGTGCCCAGGGTACCAACTGGTCTGGAGGATGTTTCCAAGTATCCTGACCTGGTAGCAGAACTGTTGAGACGTGGCTGGACAGATGATGAGGTCAAAGATGCTCTGGGAAGGAACCTCATTAGAGTGTTTAAAGCTGTTGAAGATGTACGAGACAGCCTGAACAGCACGGCTCCTGACGACGTCCCCATCCCTCTGGAGCAAGTCCAGAACCAATGCAGGACAGATTATGGCTATCCAGTCCAGACCAATGCTGCAGCCATGCCATCTCACagcttattgtttttattattaacactgaACTTATACTCACTGATTGCCAAGTTTATGTAATGGTACACCTACAGCATTCATATAAGTCCAGCTGTACAAAACTGAACACTATAAGAGTTAATTTACCAATATTTAATATGCAGAACCCCTTTCTGGTCAATTAAATGTGcaatagtaatttttttaaaaaatatttcttactagtacaaataatgtggaaaatatgTGGAAACCTGTGAACCACCTGTCAAGGTATTCTCACACATACAGCAATTTTACCACTGCAAGTTGCCAATTGCTGCACTATGAAGTTGCCAGTAGGCATTCCTACGACTGGTTGAATTAGCTTAGTTTAGCTTAAGGCCTTAGCTCATTTAAAGCCGGATCACATGCGCTCTACTGTCTTCACTCCAATTGGTAGATGCTGCACCAAGACGCTCTGAgtttgcataaagttaaacttttcTCAGCTTTGTTGCGTTGCTGGACATGCCCAAACCTAGTCGCCAAAGGTCGCTGTTGCTCATGTCCCTGGAAGTCGCCAGCTCTCACGGAAAATGAATGGTCTCCGGTGGCTTTGTTGTAGTGAGTTGCTGTATGTGTGAATACCCTTTAAGTCTTTATAGATGCACCCATTCATTCCACACCCATCTAAGTCTATTCAGAAACGAACACATGTTCGTGTTATGCTCCAGTTCGTGCCAAGCCTAGCCAGATTTTTTTACTgtgagtaataaaacacactgtgcttaaaaaaaatggcaagaaaCATAGTAAAACTAGAACAATCATTGGTCGTGTTTTTCCAAGTTGGAGAAATGTAGTCCTGGTGATAGGGATTAAGTTGGGTGTGTAATTAGTGCCGTTCCTCCTAGACATGTATGCAATCTATATAAAGCACTAAATCATTTAAATGGCTGTCTTTACAATGAATGCACAATTATTAGGCAAAGTCACTATTATGATTTGATCATTATTTCTATGCATATTATCCAACTATTAACCATATAAACCTGAATGCTAACTGGGTATAATTATTTTCAGGtggtttaattgtttaatgagGGAGGCTGTGGCTTAAATTGATTAACACCCTATATAATATATGCAGCACACTGCAGATTGCAAAACTATTGAGGCGTGACCACGGGACAATCAtaatgcatttcattggctatgtacttgtactctgcacaatgacaataaatttgaatctaatctaatctaagatAATCTATTAAGGTGTGCATAATTATTAAGCAGCTTCTCTACCCCAGGAAAATGGGACAAAAAGAGATTTAACTGAGACTGAAGAGTCAAGATTCACACTGCAGACTGCCAAACTATTGAGGCGTGACCATCATATGCTTTGTTATGAATACTCAACAGGGTCGCAAAAAACGTGTGGAGAAGAATAGGTGCAAGTTGACTGCAAAAGACTTAAGAAGAGTAAAATGTGAGGTTACCAGGAAGCAGTTAGCCACGGTCCAGTGCCACTGAATAAGCCTCACAAGCTGAAGCGTCATGATTAGGCCAAGAAATACCTGAAGAATGATGTCTCAAAGGTTTCATGGACAGATGAAATGACAGTGACTCTAGATGGACCAGATGGGTGGGCCCGTGGATGGATTACTAATGAGCACAGAGTAGCAGTTTGAGCAAGGCATCAGCAAGGTGGAGATGGGGTACTCATTTAGGATGAGCTAGTTGGACCTTTTCGGGTTGAAGCTGGACCGAAAATCAACTCCCAAACCTAATGCCAGTTACTAGAAGGCACTTTCTTCAAGTAGTGGTACAGGAAGAAGTAAGCAACATTCAGGAAGGCCATGATCTTTatgcaggacaatgatccatcACATACATGAAGGTATACCACTTCTTGGCTAGCCAGAAAAGGCACCAAAGATGACAGAATCATGACCTGGCCCCCTTCCTCACCTGACTTAAATCCTACTGAGAACTTCTGGGCCATTCTCAAGCATGAGATTTACAGTGAGGGAAGATAATTCACCTCTTTGAACAGCATTTGGGAGGCTATGGTGGCGGTGTCAGCTAAAATTGATTGTGAACAGATCAAGAAACTGACCGATTCATTGGATGGAAGGCTGACGGGGGTTATTGGAAAGAAAGGTGGCTATATTCATCACTGAATAAATTTGAAGGGCCAAAATTGTTGTTAATTGTTATATGTTGTTTTATGTTAGTCATCTGTTAAATAATACTTCAAGATTGAAGAATAAACgagtaagtgaaaaaaaaattagttgcCCAATAGTTGTGCATACTAAAATTTGCCTAATAATTGTGCACACTATTAATTTCCCCTGAGAAAGACAAATCtcaatttttctttgttaaacattctattttgatgtgaaataaacatttaggaTCAATTGAGACCACTGTATTTGTTCACCAATAAAATTAAGCTGAGAAATAC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016805 dipeptidase activity molecular_function
GO:0008235 metalloexopeptidase activity molecular_function
GO:0008239 dipeptidyl-peptidase activity molecular_function

KEGG:

id description
K01273 DPEP; membrane dipeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208744 lncRNA downstream 58574 5304614 ~ 5407099 (-) True G176354
TU208726 lncRNA downstream 352405 5110114 ~ 5113268 (-) True G176336
TU208332 lncRNA downstream 618532 4840748 ~ 4847141 (-) True G176029
TU208331 lncRNA downstream 624980 4839988 ~ 4840693 (-) True G176028
TU208311 lncRNA downstream 729257 4732382 ~ 4736416 (-) True G176015
TU208989 lncRNA upstream 150539 5631826 ~ 5715020 (-) True G176556
TU209305 lncRNA upstream 601541 6082828 ~ 6167802 (-) True G176817
TU209304 lncRNA upstream 690911 6172198 ~ 6176354 (-) True G176816
TU209329 lncRNA upstream 703048 6184335 ~ 6188288 (-) True G176832
TU209358 lncRNA upstream 779510 6260797 ~ 6261240 (-) True G176855
XM_034308719.1 mRNA downstream 13332 5434667 ~ 5452341 (-) True LOC113536779
XM_026930560.2 mRNA downstream 18951 5419996 ~ 5446722 (-) False nqo1
XM_034308721.1 mRNA downstream 18954 5419996 ~ 5446719 (-) False nqo1
XM_034308720.1 mRNA downstream 20517 5419996 ~ 5445156 (-) True nqo1
XM_026930559.2 mRNA downstream 36240 5419996 ~ 5429433 (-) False nqo1
XM_026930788.2 mRNA upstream 24630 5505917 ~ 5509942 (-) True hp
XM_034308452.1 mRNA upstream 55765 5537052 ~ 5545521 (-) False dhodh
XM_026930360.2 mRNA upstream 55765 5537052 ~ 5545521 (-) True dhodh
XM_026930627.2 mRNA upstream 85373 5566660 ~ 5573176 (-) True ist1
XM_034308844.1 mRNA upstream 85373 5566660 ~ 5572762 (-) False ist1
trnai-uau_2 other downstream 151419 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 175079 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 268855 5191964 ~ 5196818 (-) False trip4
TU208689 other downstream 275151 5139610 ~ 5190522 (-) False trip4
TU208693 other downstream 384778 5079817 ~ 5080895 (-) True G176307
TU209010 other upstream 215171 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other upstream 215171 5696458 ~ 5708265 (-) False LOC113536561
TU210154 other upstream 2000162 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 2099147 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 2099147 7580434 ~ 7588815 (-) False si:ch1073-365p7.2

Expression Profile