RNA id: XM_026930586.2


Basic Information

Item Value
RNA id XM_026930586.2
length 3707
RNA type mRNA
GC content 0.47
exon number 19
gene id fes
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8330088 ~ 8366987 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAGGATGCGGCCGCGCTTTGGTGCGCGAGGACACAGTGGTTCTCTTTAGTACAGCTTATTCCGATTGCACGCGCAGCAGCTCGCGTGAGTGAACGGCTTGCTGTTCTGTTCTGGGGAATACGAGTCTTTccgttgttttgttttgttctgttttgttttgttctgtttttttgttctgtccTCAGGCTTTTGTTTCGTCCATGTTGTCGTGATTAAATGGACCTTCACGCCCTTCACACGTCCTGAGACAAGACTCCGAGGAGGCTGTTGTAGTGCAGTGGGACGATGGGTTTTGGGGAGGAACTGTGGTGCCATCAGGGTCATGCTGCTCTGCTGCGGCTGCAGGACTCTGAGCTGCGGCTCATGGAGGTGATGAAGAAGTGGATGACCCAGAGAGCCAAGAGCGATCGCGAGTTCTCTGCTCAGCTGCATCAGATGGCGGCAATGGTGGAGAAACTGGAGGGCCCTCAGGCTGGAGGAGGCTTGGATTATATCAGCCAGCTCCATAAGTCGTGGAACGTGATGGTGAGCGAGACAGAGAACCTGAGTCGGATCCTCCGCAAGCACTCTGAAGACCTGATGGTGGGTCCGCTTAGCAAACTTACGCTTCTAATCAGAGACAAACAGCAACTAAAGAAGACGTATGGCGAGCAGTGGAGCCACCTCAACCAGGAGCTATGCAGGGTCACCCAAACTGAGTTGGACCGCCTGAAGTCTAATTACAAGCAGTTGGTGCGGGATGCAGCTCAGGCCAAAAAGAAATATCAAGAGGCGAGTAAAGACAAAGACCGTGAGAAAGCCAAGGAGCGCTACATCAAAGCCACACTGAAACTTCATGAGCATCACAACGAGTACGTGCTGGCAGTAAAGGCGGCTCAAGTGCATCATCAGCAGCACTTTGGCCGGGTCCAGCCGGCACTGCTGACAGCTCTGCAGACGCTGCAGGAGGAGATGGTGCTCATTCTgaaGGAGATTCTGCAGGAGTATTTTGACCTGTCCAGTCTGCTCCAAGAtgaagtggtgtgtgttcaTAATGAGATGACCAATGCCATCAAGGCCATCGAACCACACAGAGAGTATGAAAGCTTCATTCAGCAGAACAGgtcgAGAGCAGAGGtaccagtgtgtgtggagtttgacaGCAGTCTACTAGAAGATACTGAACATTTGAAGCCTGAGGAGCTGGAACTGAACGAACTCACTCTGGAAGGAATACAGCACCGGCTCACCACTATTGAGGAGGAGCTTCTCAGCATAGCAGCGACTCTGGGAACACAGCAGGCCACTGTTAACCAGCTGGAAATGGACCTGGAGGCCGAAGAGAGCTTGGACAACACTGGCCAGAGGGTGTACCAGTTCAGCAAGCGCAATGCTCTGGAGGACAGCAGGCAGCAGGTGGTGACATCGATGGTGGCACGTGCCCGGCTCGAGGCCCAGCGCAGGTTGCTGGCTGATAAACTGCAGAGCCTCGGCAGTAATGACGCACCATCATTGGGCCTGGATGATGATCGGATTTCTCTCAACTCCAGCATCTCTGAGCGTGACAAAGACTTCAAGGTCCCCAGCATGGACAGCATCCTCAACCATCTGAGCAGCCTGTTCAAACCCAAGTACACTGTGCCACCTGCTCTGTCTCCTGTGCCCGAGGTTGAGAAGCCTCTGAGTCAGCAGTGTTGGTACCATGGTGCCATCCCACGTGTCGAAGTCCAGGAGCTGCTGAAGAAGGATGGGGACTTTCTGGTCAGGCAGAGCCAGGGTAAACAGGAATATGTGCTGTCTGTGCACTGGGGTGGACAGTGTCGCCACTTCCTCATTCAGAACACAGAGggTATTTATCGTCTGGATGGTGAGGGTTTCCACTCTATACCACTGCTCATGAACCACCTTCTCAACTCCAACAGAAATGTCACTAGGAGGACAGATATAGTTTTGAAAAGACCCATCCCAAAGGACAAGTGGTGCATAGAGCATGATGACGTTATTCTTGGCCAAAGCATTGGGCGGGGGAACTTCGGTGAGGTGTTCAGTGGCCGCCTGCGCACAGACAATACACCAGTAGCGGTGAAAGCCTGCCGTGAAAACCTTGCCATAGAactcaaaaataaatttctcatGGAAGCTCGGATTCTAAAACAGTATGACCATCCGAACATAGTGAAGCTCATCGGTGTCTGCACGCAGAAACAGCCCATCTATATAATCATGGAGCTGGTGCAAGGGGGAGACTTCCTGTCTTTCCTTCGTTCAGAGGGACACAGCCTGAAGCCAAAGATGCTAATTAAGATGGCGGAGAATGTGGCGTCTGGCATGGAGTACCTGGAGAGCAAGAAGTGCATCCATCGGGACCTGGCAGCGAGGAACTGTCTGGTAGGAGAGAAGAGTGTGGTGAAGATAAGTGACTTTGGCATGTCGCGCGTGGAACAGGAAGGCGTGTATTCAGCAACCGGCGGCATGAAACAGATCCCAGTAAAATGGACTGCACCAGAGGCCCTCAACTATGGGCGCTACACCCATGAGAGTGATGTGTGGAGTTTTGGAGTGCTGCTCTGGGAGACTTTCTCTCGAGGAGTAACTCCATACACCAGCATGAGCAATCAGCAGACCAGGGACGAAGTAGAAAGAGGGTATCGTATGCCAGCTCCCAATGGCTGTCCAGAGGAGATCTATGCCCTAATGCGTCGCTGCTGGCAGCATGACCCACGGATGCGTCCTTCCTTCCTAAAAATCAGGGCAGAGCTACAGGCTCTTTGCatttaacatacacacacaaacacatacatctCTTAAGCTGTGCTTTTTGACACACATGCAAAATTATGTCTAATGTTTAAATGAACAGAACTTTTGATATGGCTGTCTTTGTAGTGTATATTTTGCTTCtggaacattttataattttttaaatgtatttaaattgaaACCTTGCATAACTTATGATCACGATGTATTCACATGACATTGGTTTTCCTCTAAATAAAGTCTGTGTTGTGACGCAAAGATGAAATCTGTAAAGATAAAATCAGACTTCACATGCATGTTATCTAATAGCCTTTGTAATATAATCTGCCTTTATCATCAGCTATTTCTTACTTTAGCTGTGGAAAGTTAGCAGGTGATGTATAAATAATCAGGGCTGACAAATGAACACAGCCCTCTTTCACAAGATCTGAAgttttttctcaattttttcccccaaaacaaCAGGTGAAAGGATTCCAAACATAACTCATCAATGCTGTGAACAGGTCTTTTGCAGATATGTCAAAAGTAAATAGAAATAAGCTTTTAGTGTTCTGTAAGGTAGCCCAAAGCCAACAGACTACATTCTGAAGCTTGACtttacacaaatgaaaaatgaactgAACATGTGCTGAACATATTGTGCAGTTGTTTTGCCACTATTCAGAGGGGCTTCATCAGGCTGCCGAAATGATTCAtgctttttaaacactgtgtatgaTCTTGAAATTAGTGTCATAATTATTGAATTATGATTAAATGTGTACATCATGATTTATCAGTaagaaacacatcacaaatgGCTTTCAACTTAGGGCTGATATTTTGATATCTAAAGAAGacacattaaatacacacaaaataccTCATTAATGTGTTAAAATCAATAATATTGTTCCAAACAATATTCTGTATGcatttttgttataaaaattcaaagctaaaaattaaaattgctaaatctgta

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210754 lncRNA downstream 5924 8323619 ~ 8324164 (-) True G178057
XR_003403692.2 lncRNA downstream 54728 8271107 ~ 8275360 (-) True LOC113536653
TU210491 lncRNA downstream 403030 7926293 ~ 7927058 (-) True G177807
TU210390 lncRNA downstream 575070 7707511 ~ 7755018 (-) True G177729
TU210939 lncRNA upstream 154815 8521801 ~ 8522085 (-) True G178208
TU210961 lncRNA upstream 226200 8593186 ~ 8593405 (-) True G178227
TU211159 lncRNA upstream 344191 8711177 ~ 8712118 (-) True G178398
TU211259 lncRNA upstream 616232 8983218 ~ 8984148 (-) False asb7
TU211271 lncRNA upstream 636658 9003644 ~ 9003852 (-) True G178501
XM_026930771.2 mRNA downstream 17594 8307279 ~ 8312494 (-) False LOC113536672
XM_026930770.2 mRNA downstream 17594 8307279 ~ 8312494 (-) True LOC113536672
XM_026930844.2 mRNA downstream 149437 8173261 ~ 8180651 (-) True mrpl46
XM_026930256.2 mRNA downstream 205303 7992004 ~ 8124785 (-) True ntrk3b
XM_026930322.2 mRNA upstream 6509 8373495 ~ 8451252 (-) True furina
XM_026930902.2 mRNA upstream 86018 8453004 ~ 8469432 (-) True LOC113536763
XM_026930543.2 mRNA upstream 124266 8491252 ~ 8508330 (-) True abhd2a
XM_026930815.2 mRNA upstream 155622 8522608 ~ 8529443 (-) True rasl12
XM_026930901.2 mRNA upstream 167982 8534968 ~ 8543975 (-) True ubap1lb
trnar-acg_8 other downstream 82326 8247690 ~ 8247762 (-) True trnar-acg_8
trnar-acg_7 other downstream 83313 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-ucg_7 other downstream 85367 8244649 ~ 8244721 (-) True trnar-ucg_7
trnar-acg_5 other downstream 87285 8242731 ~ 8242803 (-) True trnar-acg_5
trnar-acg_4 other downstream 87910 8242106 ~ 8242178 (-) True trnar-acg_4
trnae-uuc_3 other upstream 523641 8890627 ~ 8890698 (-) True trnae-uuc_3
TU211757 other upstream 1155430 9522416 ~ 9523330 (-) True G178942
TU211855 other upstream 1446906 9813892 ~ 9815225 (-) True G179035
TU212647 other upstream 2876989 11243975 ~ 11246305 (-) False nppc
TU212749 other upstream 3042106 11409092 ~ 11415440 (-) False G179803

Expression Profile