RNA id: XM_026930588.2


Basic Information

Item Value
RNA id XM_026930588.2
length 2376
RNA type mRNA
GC content 0.45
exon number 11
gene id srsf11
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5830751 ~ 5843843 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAGCAGTCGACGTGAGTCGCTTGTTCATAAAACAGCTAATGAAAATTGAAAGCAGCTCCCCTGGACAACCGGCTGTGTGCTTGCTTACATTTGGTTCATGACTTAGAAAAAGTTCAGGAGTGATCCCCGATGAGTCCAAAGCTCTGTCGCTGATGGCTCCAGCCAACGCCGTCGCAGGAATGTTGCCAGGCGGCGGGCTTCTCCCCACACCCACTCCAGTGCCATCTATTGGTGGTGTTCCTCTTGGCTCTCTGGGTGGGCCTGGCATGGATGCTATGGCAGCTTTAGGCATTCCTGGACCCAATATGAACCCTCAGTCTCTGTCGGCGGAGCAGATTATGAAACTCATGGCGTCAATGGATCCCAAGTTAAATCCATTGGCTGCTGGTTTAAACCTAAACGCTGGACTAAAGGCAGATGCGTCGAACAAGGAGATTGAGGAGGCCATGAAGAGGGTGAGAGAGGCCCAGTCTCTGATCTCGGCTGCCATCGAGCCTGGAAatAAGAAGGATGACAAAAGGAAGCATTCAAGGTCGAGGTCAAGGTCACGGAAGAAGCGATCGAGGTCTCGCTCCAAATACAGGCGTTCCAAGAGCCGGTCACGGCGACGGTCTCGCTCCAGGAGCAAGAGGAGGTCTAAGAGCCCCCGCAGGAGGAGATCTCACTCTAAAGACAAGAGGAAGCGCTCCAGGTCAAGGGATCGGAGAAAGCGCTCGAAAACTCCTCCGAAGAGCTACAGCAGCGGCAGACGCTCCCGCAGCACCAGCCGCAAACGGCACAGGAGGAGCCGCAGCATCTCCCACTCACCGAAAAAGTCCAGATCTCCAAAGAGGAGGCTCTCTAGATCTCCTTCTCCCAGGAGGCataagaaggaaaagaagaaggacAAGGAACGCGAAAGAGACCGGGACAGAAAAGAAGACCAAAACCGAGACAAGAGAGAACGTTCCACCAGCAAGAAGAGCAAAGACAAGGAGAAGGAGCGAGACAGGAAGTCAGACGGCGAGAAGAGCGACGTGAAGGTGATCCGGGATTATGATGAAGAAGAGCAGGGCTACGACAGCGAACATGAGGAAGAGCGGGAAAGGAGCCCAGACATGGCGCCGTCTCCGCACGCCGACGGCGCTGGGAGGGGAGAGTCAGACCAACACAGCGACGAGCAGCAGGACGAAGACATGGACATGAGTGACTGATGGCATGCACAGGAGCAGCACATGATTCTGACAtaccttttaaaaaatttgctCATGTAACACTTATGGTTATAAATTAAAAGTGATAGTTTGGCCAAAAATTAAGTTTCTTTAATTTTTCCCTTACAGCAAATGTAGTCAGTTAGACCAGACGTGTTTGGTGTCCACAGTCTGCTCctttagttttgtactggaATGAGCCAAATGATGtgttttgaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgatgattcagGTGTTCAGACGTCTGGCTGATCAGCTACATTTGGAATAAAAGGAGCATTGTGTTAACGTCACAACTATCACTTTAAGGTTATTCACTGCGGAGCTGATGttattgatgaaaaaataatgtCGGGATATTTTCCATCACATTCACTAGAATGTTCCTTTTATGTGACTACATCTCCCTAAATACTGCTGTACTCACCTGtaaaatgtagttttaattcttttaatattCTGCCATCGATCTTTCAgtacttttttcagtgtaaaaatCTATCATCGGAATATTTGTGTGCTGATTAGTTATTCTCATTAAACAAATCTGACTCGCTTTCCATTTCACACAAGTTAATCATATATAAAAATCTGACGTGCTGCGTGTGACACTTCTTACTGTCGAAAGCTGGGGAGTGTTTGCAGGGGTGCTGTGGAAAAAACACTGCACttggctttttttaatttctgatttaatttaaagttacaaCTGCTAATGTTACTGTGAATATTACTGGTCAGTAggcttgattttgattttttttttccctgctcgAAGGTTACCATTTAAAACAATTGCGTTAAACAATTTAATCATCCACAACCAATAGGAACGGGGaaacatttccaccatttcaggatTAAGAAGGAGAGAGATATGGGAGAGAGTAATATTATTACTGACCGTGCAGATGGGAGTGTAAATTGGATTTGTTGAGATGATTAAATCGatatatcgcacaagcctactGGTCAAATATGTTTGTtgcattttggttttttttttttttgcacagccATGTATTTTTTCCATATCCCCAGATTGTAGATTTCCTTAGAGAATGGTTAATTATGGTTATTATTTGCAGTGTTGTGAAAGTTGAAAATAAAACTTCAAGTCTTGTGatttattactttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208989 lncRNA downstream 115731 5631826 ~ 5715020 (-) True G176556
TU208744 lncRNA downstream 423652 5304614 ~ 5407099 (-) True G176354
TU208726 lncRNA downstream 717483 5110114 ~ 5113268 (-) True G176336
TU208332 lncRNA downstream 983610 4840748 ~ 4847141 (-) True G176029
TU208331 lncRNA downstream 990058 4839988 ~ 4840693 (-) True G176028
TU209305 lncRNA upstream 244549 6082828 ~ 6167802 (-) True G176817
TU209304 lncRNA upstream 333919 6172198 ~ 6176354 (-) True G176816
TU209329 lncRNA upstream 346056 6184335 ~ 6188288 (-) True G176832
TU209358 lncRNA upstream 422518 6260797 ~ 6261240 (-) True G176855
TU209451 lncRNA upstream 519295 6357574 ~ 6358087 (-) True G176938
XM_026930735.2 mRNA downstream 44207 5781225 ~ 5786544 (-) True plaat1
XM_026930273.2 mRNA downstream 49598 5773557 ~ 5781153 (-) True LOC113536391
XM_034308690.1 mRNA downstream 70029 5712448 ~ 5760722 (-) True sos1
XM_034308691.1 mRNA downstream 70030 5712448 ~ 5760721 (-) False sos1
XM_026930577.2 mRNA downstream 122447 5696380 ~ 5708304 (-) False LOC113536561
XM_026930734.2 mRNA upstream 16098 5854377 ~ 5858326 (-) True rbbp9
XM_026930297.2 mRNA upstream 85930 5924209 ~ 5929129 (-) True LOC113536410
XM_034308420.1 mRNA upstream 110769 5949048 ~ 5998137 (-) False eml6
XM_034308419.1 mRNA upstream 110769 5949048 ~ 5998137 (-) True eml6
XM_026930527.2 mRNA upstream 163412 6001691 ~ 6084807 (-) True sptbn1
TU209010 other downstream 122486 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 122486 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 516497 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 540157 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 633933 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 1643170 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 1742155 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 1742155 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 1742155 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 1742155 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile