RNA id: XM_034308794.1


Basic Information

Item Value
RNA id XM_034308794.1
length 3896
RNA type mRNA
GC content 0.44
exon number 22
gene id mctp2b
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7595015 ~ 7623473 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGGAAGTTTTGCCTTTCCTCGTTGCTCTCTCGGCTCTGTATCTCCCTCCTCCGCgtgtgtttgcacatgtttatctCCGGATTTCAGCGCTTtgctcacaacacacacacacacacacacacacagccgacCAAGATGACTATAAAAAGGCTTTAAACGCTGGACCTCAGGCCTTGATAACTATCTCACTCTTGTGTATGAGGCTTTGATCACTTCCtgtgcccacacacacaaaaatcctCTGGATGGAACCCAGTACAGGATCCAAAAAGACAGTATGGGGTAACCTGCGCCAGAGAGCTAAGCCAATCATCCACTACGTCCGCGGCAACAGCCAAAGACACATCAAGCCGCAGGTTAGACCAGAGCGAGTGTTGGACCATAGGACGAGCTCTTCAGTGCCTGCTTCCCCATCCCAACCAGCCCGCCATCCCCCCATCGTCGGTCCCTCCACACCTGTCAATCAGCCTGTATTAGAGACAGGGGGCGGGGCCCAGCGTTCTGATTCGCCTGCTGGGCCTGCGGACTTATCTGACTGGATACCCCAGGACTCGGTGGACGGCGGCCTTGATGAGGAGCAGGACTTCTTGGATGCTGTAGATGAGATGGAGCTGCTTCCAGAGAACTCAACAGAGGTGCTGGACATGGCCGGAGAGAGCGGGAGTGTCTGTGAGAATCATAAGGATCCTCAGAAATCCTACCTGCTCTCCATTAACCTGAAAGAGGGCCGAGGCCTCGTCATCAGAGACCGCTGTGGTACAAGTGACCCGTACGTGAAATTCAAGCTCGAGGGAAAGACATTGTACAAAAGCAAAGTGATGTATAAAAATCTCAATCCAACCTGGAATGAGTTTTTCTCCTTCCCCATCCGTGACCTACAAAAGAAACTGCACATCAAGgtcTATGATCGAGATCTGACCACAGATGACTTCATGGGCTCCAGCAGCGTGCTCCTGTGTGAACTGGAACTTGAGAAgacGATAGAAATGGTGCTACCTCTCGCTGACCCCAACAGTCTGGAAGATGACATGGGTGTGATTATCATTGATATTAATCTGTCAGTCAGAGACGGAGAAAACAAACGCAATAAGTGGGTTCAGAAGAGGAAACGAAGTCTGAAGTCGAGCTCGTCCCCGCAGACCCGACGTCTCGCTGAATCTCTGAAGAAGAGCCAGCTGTGGTCTGGAGTCCTGAGCATCACGCTGGTGGAGGGACGCAATCTACCTGACGATGGACCTGGAGACGTGTTTGTTCGTTTCAAACTCGGAGAGCAGAAATACAAGAGCAAGAGTCAGTGCAAAAAGGCCAACCCTCAGTGGAGAGAGAGGTTCGACTTCAACCAGTTCATTGATGGGCCAAACTTTTTGGAGATAAGCGTCTGGGCCAAAGAGGGCCGGAGATACGAGGAATGTTATGGACAGTGTGAAGTTGACGTGTCTGGGTTGAAAGTGAACAAATGCCAGTTGTTCACGTGTAGCTTGGACCAGAGTCGAGGCAAAGTGGTTTTCCTCGTCACTCTGACAAGGTGCAGCGGCGTGTCCATTACTGACCTGTGTACACCCCTACTGGACGAGCcacatgagagagaaaacatgatAAACAAATATAGCTTCAGGAACTCCTTGAAGAATTTAAAGGACATCGGCTTCCTTCAGGTCAAAGTGCTCAAGGCTTCAGACCTCATGGCTGCAGATTTAAATGGGAAGAGTGATCCGTTCTGTGTGTTGGAGTTGGGAAATGACAGACTGCAGACTCATACAGTCTACAAAACTCTTCACCCTGAATGGAATAAAGTCTTTACATTtCCAGTCAAAGACATCCATGATGTTTTGGAAGTTACAGTGTTTGACGAGGATGGAGACAAGGCCCCGGATTTCCTGGGGAAAGTGGCCATTCCTTTACTCTCAATACGTAACAATCAGCTGATTTCTTGCCCGTTGAAGAAGGAGGACTTAGGAGGATTATCCAAAGGAGCCATTTTGTTAGAGCTTGAGGTCATCTTTAATCCAATCAAAGCAAGCGTCAGGACCTTCAACCCAAAGGAGAGGAAGTTCCTTGAAGACAATCCTAAGTTTTCCAAAAAGGTCCTGGCAAGAAATGTTCTCCGTGTGAGGAACATCTATAGAATGTTGAGCCAAATCTTGCACTATATCAAGAGCTGTTTCCAGTGGGAGAGTGTCCAGCGGAGTATCTTTGCATTTGTGATCTTTGTGCTCACTGTGTGGTACTGGGAGTTCTACATGCTGCCTCTGTTCCTGGTCATACTGCTCATATGGAACTATGCTCAGGTCGCTTCTGAGTGGGGCAGCCAGGAAATGgacAGTACAGAcagtgatgatgaggatgaagacGAGAGGGAATCTGAGAGAAGAGGTTTGATAGACAAGATCCACATGGTCCAGGATATCGTTGTCACTGTCCAGAATTTGTTGGAGGAAATTGCATGCTTTGTTGAGAGAATAAAAAAcaccTTTAACTGGTCAGTGCCATTCTTATCGAATCTGGCCTTCATGGTTCTCATCACTGTCACAGTGATCACGTACTTCATCCCGCTGCGCTACATTATTCTGATTTGGGGTGTAAATAAATTCACGAAGAAACTACGGAATCCATATGCTATTGATAACAATGAAGTGATGGATTTCCTCTCCAGGGTGCCTTCAGATGTCCAAAAGGAACAGTATTTGGAGCCAAAACCTGTCCACAGTCACAGTTCTTACAGAAGAAAGAGAGCTGTCCAGTAGATCCAGATCTGTGCTCATCTTCAGAGACTCAGTTAGTATCAGTGACACTACATATCCACTCAATTCTCCCTACTTatttaattttagaattttataaatcccagagtgttttattttaaaacagtttcaattatttgtttcttttaaaatcacttaattattttaaattgtttattattgtacGTGCTGTGCAACGTTTTAAGTGAATTAAAATCAAACTTACCCCTACTGGGGCGGTTACTAGTGGGCTAGTACCAAAGAAACTAATGCTACGAAGGATTTTTAATAATCTTAGCGGACTTGGCTtgtggtttttttatttatatcacagtgtaTTGTATATGCAGTGGATACTCCACAGGAAACACTGATCTAAGTTTGCTTAATGGGGAGGGGAGAACCACACAGAATACTGCTCTCAGATGCTATGGGCTACGTCCTAAACTGCGTAGTCTTTAGCATATACTGATGTAGCCACAGTTTCATTGTACATTGATATTTAAATACTCAAACTCCAAGTTCCTAATTCCTGAGTTATAAGAGAGTGCAATATACTGTAATACCTGGTGTCTGTTGGGCCAGGATGCTTTTTGTGGTGTAGCAGTACATGTGTATAAAGTTTGTGGATTTCACAGTAAGCCTTAGTGGTGGTGTTTTAAACTATTCATCAATTATAGCTTAATGTTACTTATAAGAGATTTACACTTCAAatgttgatatatttttgtacttttaagcCTTTTATAATGATCATATGTGTCATTGTGattgtaaaaaatatttcagatccATACGGAACTTTAAGAAGCAGAAGTGCCTTCTGTGTATTCTGTACAATtgtaaataaatctgattttaagATTTGCACTTTCCAAACATACATCTATATGTCTTACAGAGTTGTGGTGGAAATTATTGGTGACATTGACAGTTGTATTCCTTGTTTACCATTGACCGTACTTTTCAATTATTTTCCTTATGTGTAACAAAATCTGAAACACATTTCAGACTCACTTTGGTTTCTTATCTGGGTATATACGGGATTAATGTACGCACAGCATCTTGATCTTTTGCACAAAGAAAGTTCACTAAATTTGACTCACTGTTCACTGTATACAGAATACAATAAACTCAAAGTCAAGCTGCAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210347 lncRNA downstream 43265 7551522 ~ 7551750 (-) True G177691
TU210337 lncRNA downstream 85827 7508851 ~ 7509188 (-) True G177682
TU210182 lncRNA downstream 115627 7479158 ~ 7479388 (-) True G177562
TU210179 lncRNA downstream 123805 7470974 ~ 7471210 (-) True G177559
TU210170 lncRNA downstream 152620 7441891 ~ 7442395 (-) True G177550
TU210367 lncRNA upstream 52443 7675916 ~ 7676670 (-) False igf1rb
TU210390 lncRNA upstream 84038 7707511 ~ 7755018 (-) True G177729
TU210396 lncRNA upstream 105440 7728913 ~ 7750806 (-) True G177733
TU210491 lncRNA upstream 302820 7926293 ~ 7927058 (-) True G177807
XR_003403692.2 lncRNA upstream 647634 8271107 ~ 8275360 (-) True LOC113536653
XM_034308540.1 mRNA downstream 6200 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XM_026930688.2 mRNA downstream 6200 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XM_034308538.1 mRNA downstream 6200 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XM_026930687.2 mRNA downstream 6200 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XM_026930582.2 mRNA downstream 17175 7564380 ~ 7577840 (-) False ero1b
XM_026930310.2 mRNA upstream 2023 7625496 ~ 7656954 (-) False LOC113536417
XM_026930309.2 mRNA upstream 2023 7625496 ~ 7656954 (-) False LOC113536417
XM_026930306.2 mRNA upstream 2023 7625496 ~ 7656954 (-) False LOC113536417
XM_026930311.2 mRNA upstream 2023 7625496 ~ 7656954 (-) False LOC113536417
XM_026930307.2 mRNA upstream 2023 7625496 ~ 7656954 (-) False LOC113536417
XR_004579066.1 other downstream 6200 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other downstream 6200 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other downstream 6200 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other downstream 6200 7580434 ~ 7588815 (-) True si:ch1073-365p7.2
TU210154 other downstream 111057 7481449 ~ 7483958 (-) False si:dkey-56d12.4
trnar-acg_4 other upstream 618633 8242106 ~ 8242178 (-) True trnar-acg_4
trnar-acg_5 other upstream 619258 8242731 ~ 8242803 (-) True trnar-acg_5
trnar-ucg_7 other upstream 621176 8244649 ~ 8244721 (-) True trnar-ucg_7
trnar-acg_7 other upstream 623230 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-acg_8 other upstream 624217 8247690 ~ 8247762 (-) True trnar-acg_8

Expression Profile