RNA id: XM_026930602.2


Basic Information

Item Value
RNA id XM_026930602.2
length 6940
RNA type mRNA
GC content 0.47
exon number 24
gene id LOC113536575
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5229326 ~ 5302351 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTACTGAAATTTGGCAAAGTTGCAGATAGGGATGGTTCAGAGTGAATCTGGGCGGGTTTGAAGTCGCTACTGGGTTTGAAATTTTGTggatccaatctggcaacctctgCCCCAGGCCTTGAGTCAGGACTCCCGCTGCTCCGGCTCTGGCTCCGGCTCCGGCTCCGGCTCGGGTTCCGCGGGATGGCTCGCGCTGATGAACGCTGGAAAGTTTGGGCGTAAGAGCGCCGCATCGTGCGCCATGGCTTCACTCAGTCTGCGTCCTCGGTTAACGCAAAGAGCTTTAATGCGAAATGAAAGCCGTTTAAAATGAccatccgtgtgtgtgtgtgtgtgtgaggaagacgGCTGAAGTGCACGAGCTTGCTCAGATTTGAGGATGCACTCGAAGCGCGGATTTTGCGCGTTTGGCTCGGCCTTCTTACTCCCAGCTGTGCTCCTGACCCTTGTAGAGAGCGCAGAACCTAATGTGCTGAATGAAATTACAGGTAGCTCTCCCGAAGGGCTTCTCCAGTACGAGATTGTTCGCCCACAGAGAGTGGATTCAGATGGAGCTTTTATCTCGAACCTCGTGTCCTACCGTGTGAGTCGGGTCCACCGGAGGCAGACTGTAGACAGCATTGAAAGTCTGCCTCGTGTTTTCTACCATTTACAATACAATGGCGAGAACTTGCTTTTCAACCTCACCCTGAACCCATATCTGCTAGCTCCTGGTTTTCTCACAGAAAGGCGAAACGGTGGCCTCCGGGGCTCCACATTACATTCTCCTGGCAACTCTCTGTGCTACTTCCTTGGAGAGGTTTCGAGTGAATCAGCTGCCAAAGGTCAAGCAGCTGTGAGCACCTGCGATGGCTTGACAGGGCTGTTTAAACTCTCAGAGGAGGAATTCTTCATCAGGCCGCTGGAACAGACACACGGATCAGAAGAGCCACAGGCTCATGTCATCTACAAGCGACATACTACTGAGCACAACAGCCAGCTGGTGCAGCCTTTATTCGAAGGGAAAACATCCAACGGGACCTGTGGAGTCAAAGATGTTCAGGGAAGAGCACGACGAgtagagagacagcgagagcgTTGGGAGAAACGCCATCACCGGAGGAGAAAACGCTCCATCAGCAGGGAAAAATGGGTGGAGACTCTTGTGGTGGCCGACCCAAAAATGGTAGAGTACTACGGCAAGACTGGAGCGGAGAGCTACGTTCTAGCTGTTATGAACATTGTTGCAGGGCTGTTTCGGGACCCGAGCATCGGAAATGCCATCAATGTTGTGGTTGTGCGTCTCATTCTGCTAGAACAAGATGAGGAAGACTTGAAAATCACTCACCATGCAGACAACAGCCTCAACAGCTTCTGCAAATGGCAAAAGCACTTGAATATAAAAGGAGACGAACATCCAGTTCATCATGATGTGGCTGTCCTACTTACAAGGAAAGACATTTGTGCTTCCACCAATAAGCCATGTGAGACGCTGGGGCTCTCTCATGTGGCGGGAATGTGTCAACCTCATCGCAGCTGCAGCATCAATGAGGACACGGGTTTGCCACTGGCCTTCACCATAGCACACGAGCTGGGACATAACTTCGGGATTGAACATGATGGCAACAGCAATGACTGCGAGCCAATTGGGAAAAGGCCGTTTGTCATGTCTCCTCAGCTCCTGTATGGAACATCTCCACCCAACTGGTCGCGGTGCAGCCGCCAGTACATCACACGCTTTCTGGATCGAGGCTGGGGCTGGTGTCTGGATGACCCTCCTGGCAGAAATGAGCTGGCCGCTCAGTCTGTGCTACCTGGCGTTCTCTACAGCGCTGCCCACCAGTGCCGCCTCCAGTATGGCTCCAGCTCGCTGCTCTGTGATGACATGGACAATGTCTGCAGCACTCTGTGGTGCACTGTGGCCTCCACGTGTCACTCAAAACTGGACGGAGCAGTGGATGGCACCAAGTGTGGTGAAGGCAAATGGTGTTTGAATGGCGAGTGTGTATCAGTTGCATATCAGCCAGAGAAAGTGAACGGTGGGTGGGGGCCATGGAGCGAGTGGTCGTCATGCACCAGGACGTGTGGCGCAGGAGTGCAGAACTCGCACAGGGACTGTGTCAATCCCACCCCAAAGAATGGAGGGAGATACTGCCTCGGGGAGCGCCGCAGATACAGGATCTGTAACCACCAGCCATGCGCTCAAGGCCAACCCAGCTTCAGATCCATCCAGTGCAGCAAGTTTAATAGCGTCCCTTATAAGGGCAAATTCTACCAATGGGTACACGTGAATAACCAAATAAATCCATGTGAACTTCACTGCCGCCCAGTGAACGAGTATTTCTCAGATAAGATGGTGGATGCAGTAATTGATGGAACCCGGTGCTACGAGGGTAGCCAGAGTCGAGACATGTGCATTAATGGAATCTGTAAGAGTATTGGCTGTGATTATGAGATCGACTCTAATGCAGTTGAGGATCATTGTGGAGTTTGTCATGGCAACGGATCCACTTGTGAAACCGTGAAGAAGACCTTTGAGGAGAGTGAAGGCCTGGgcTATGTAGACATTGGCTTAATTCCAGAAGGAGCACGGGACATTCGCATCGAGGAGGTGGCCGAATCTGGGAACTTTCTGGCTTTACGCAGCAACAACCCAGAAAAGTATTTTCTGAATGGCGATTGGACAATCCAGTGGACTGGAGAGTACAAGGCAGCAGGGACGGTATTCATGTACGAGAGAACAGGCCAGCTGGAAAACCTGACTTCCCCCGGACCAACTATGGAGCCTGTATGGATTCAGCTGCTCTTTCAGGAAACTAACCCGGGCGTGAGGTACCAGTACACCATCAGTAGAGACGTGCTGACTGAGTCCAGCAATGGAAGCCCTGTCTCTGATTTCCAATGGAAACGTGGAGCATGGACAGAGTGCAGCGCCACATGTGGAACAGGTGTCAAGAGACAGGTTATGCATTGTGTTGAGCGAACGTTTGGAATTGTGGAGGAGCATTACTGTGACGCATCCACTCGGCCAGACGACAATCGAGTAAGCTGCAATGCTGGATTATGCCCGGCCATATGGTGGGCTGGAGAATGGCAGAAGTGCTCAACAAGCTGTGGGGGATCAGGCCTGACTAAGAGAACAGTGGTGTGTATTCGGAGTTTGGGGCTGGAAAAACACGAAGCCCTTTTGCCGTCTGAATGCCAGCACTTGCCTAGGCCTGAGTCAATCTCCCACTGCAACAAACACATTTCCTGTCCTGCTGACTGGACTACAGGAAACTGGTCAGAGTGCTCTGTGAGCTGCTCAAGTGGCGTGCAGACACGTGAGGTGACGTGCAGCTGGAACACCGTGGTTGACTGCGATCCTCAAGCCAAGCCTGCTTCTGAAAAGCCATGCAACATTCAAGACTGCCCCACAAACACGGACAGTGACTGGTCTGGAAGTGGCTCGTCAAGCAGAGAAGTTTTCAACGAGAAAAACTCGATACCTGAAGACAACCACTTACCGAAATCGGCCAAGGGAACAACTAGAGTTCAGCTCCAAGAAGACAATACTCTCAACAGCATAATCGAGGGCGACTTCTCATATCACAATCAAATCGATGCTGACAAGTCAATCAGAAACAGTGTTCTAGTTGATGACTTTTACTATGATTATAACTTCATAAAGTTTCACGAGGATCTCTCATATGATTTTGACGGTGAAGGAAATGGTGCATCTGATTACTCAGGAATTCATTTGAAGCAGGAACCCAAACCTAGTCTCAACACAGTTTACAGGGAGGGAGCAAATCCTTCCACAGCTACCTCATTTGCAAGCCATACTATGGTCCCACCAACCATCTCCACTTCCGAGAGTCCTCGTTTTGACCAACCAGACGAGAGCATCTCAGAAGTTGATATTGTTCTTTCAGAGGACTACTTCCTACCAGTTGGTACAACAGCCAGGCCACGCTCTCCCATCACCAGATTCTCTCAGAAATGGAAGGAGTTAGATGTCCCAAATCAGGACTTTGACACTATACAGAGCCTGTTACCAACGGATGAGGTACCATCTGAAAGAATGTCAACATCACATGATGccatttcaaatattaatacAAGCTCTGAGCCTGATAATGATTATTACAGAGAGATTCAGACAGACAATAATGTACCTGAGATGTCTAGAAGTCAAAAAGACAACAATGGTGTGACTAAAAGTGATGGGGAGAGTGAGGAGTTGTTTGGTCAAGGGGGTACAAACCAACAGGAACAGCCAACATGGCAAGATCTCCATGCTTATGAGGATACATATAAGTGGAATATGGCTCAGACTGTGTTAACACTAAGTACAACCTTGGAACCATTGACTTCCCAATTGAATGTTGACATTGGTACAAAGGTTGAAATGCCCATGGAACCACTTTCAAACATAAAGCACAGGAGGATCACAACTCCAGCCCCTTTGCCTGCCTGGACAGAGATCGGTTACAATAAGTTCATTGTTCCTTCATTGCCATGGTTCAAAGAATACACTTCCCCTGTTCCCTCAGCGTATCCATCTCAGGGTCCTAACAGTCAGCCTCAAGCCACCACTGAGCCTGTTATAGCCTCCCTGCTCCCAATTGCCTCCACTGCCTTCTGGATCACCAGCAACTGGAGCTCTTGTTCCACCAGCTGTGGGCTTGGTGCCATTTGGAGGTCGGTGCACTGCAGCACAGGGAATGACTCTGACTGTGATATGGCGAAGAGGCCATTACCGGCGCGACGCTGCCACCTCCGGCCATGCGCCATATGGAAGGCAGGAGAGTGGAGCAAGTGCTCGAAGAACTGTGGAGGAGGCCTGAAGGTACGAGAGATCCAGTGTTATAACATGAGGGATCAGAGGCCACTGAGGCCTTTCCACTGCCAAGCCACTTCTCTGAAACCCCTCACCCACCTGTCCTGCAACATCCAGCTGTGTCTAGACTGGTACACCTCCTCATGGGGACAGTGTTCAGAGCTGTGTGGTGGAGGAGAGCAGCAGAGGATGGTTACGTGTCCTGAAGAAGGGAAGTGTGATGAGACACAAAAGCCCAGCTCAATTCAGCAATGCAACACTCAGCCCTGTGCGCAGTGGGTTACTGGATCCTggggacagTGCTCGGCGTCCTGCGGTGGAGGCGTACAGCACCGTCTGGTCAAGTGTGTGAACACAAAGGCAGAgctggaggaagaagaggagaaggacaAGGAGGCCCAATGTGATCACGAGCCCTGGCCAGAGAACACGCGCCAGTGTAACCTCCATGACTGTGATAGCGCCACATCTGGTCAGGAGTGTGTACGCGACCGCCTGACGTTCCCCTTCTGCCAGAAGCTCCAGTGGCTCGGACGATGTCACCAACCTACAGTTCGATCACAGTGCTGCAAAACCTGTGAGCAAGGAGGCCGCGGTAATGAGCGAGCCACTCGCCGCTGAGAGGAGGAGGATCTGGGAGACCTTTTTTAAACCAAGGGAATTCtgactttcctttttttaaaccactcacacacacacacacacacacacacactcctacacacaccaAATCTAGGACAAGCCTTAAGAAAAGCTTTGTCTCCACTGACCTGCAGGATCCTGCCGAGGTACCAAGGCTTCATCCTTTATTCTGTAGCAGTAAATCAAGACCTTGAAGATGTTGTAGCGCTTCTCTGAGTTTTGAGCATTCATGAAGCACCTCAGATGAATAACACAGTTTTCAAGATTATAACATGTTTAGTAGCATTGATTCACTAATTCTAGACATTAAAATTTACATTAATGTATTGATAACCTTCATAGACATCAGACATGGAGGATTTCATATACCACCATGGTATTGAATGAAGGAAGCTTATCAGCTGAGTGCCAAATTTGCAATTCATCATTATCTATCCTATAgcaataattcattcattccttcttcAATCTTTttggattaattaattaatcttttttttcagttgaacATACATAACCCAAGCAATAGCAAATAATTATGCCCAATTTTTGTCACCATCTTAATTTTTTACTCATAAACTTACAATAAGGACTGAATTTCTGTCTAGCATTGTAGATAAGCATGTAGTTCTGTTTATTAAACTTCTTAGAAGATGAGCTAAAAGCTCAAACAATGCTTTCTACTGATTGCAGCTATTACTTAATCAGTGTATAAACCTAGTGGAAGTGTAAAGAAAAAGTGCTGCCAAAAATAAACCTGGTGCTACGGGCCACTTTATGGCCCAAACTCAATTCAGGGGTTTGTGGGCCGGTGTCTACTTGAAAAAAGGATCTGATATAAATGTGTGCTTAGAAGCATTTAGTTTTACATTGGTACTAAATATTAATTGGGAAAATGACACCTATATGATTTTCACACCATTGCATTGTTTTTGGGAAATTAGTTCTAAATGTTAAAGGAGCATTAGTGTATTTTTGGTCTTGAAAGTAACATTTGTGAAATTTGCAATTCTCAGGTAAATTTATCATCCCACTTTTTTACTTTGcagtattatttatgtattgtatagtgtgcaTCAGTTAGACAGGAATGCTTGACATTATCTCACCacatacattcatatttcaaaGCAATCAGATCTTTAAGGCAAGAAACTACAGGTAGAAATGATGAGTTCAGCCACACCAATCATCTTTTCAGATGTCTGAATAAATTGTATAAAGTGTGTACTCtaataaaatgtcacaataaaaataaataaaaatgtaataaaaatgtcacaacagaaaaatgtttttcactgtttttttattccactCGCAACCATTATCAAAATCTGAAACGTAGCAACCTTAACAAATGCCTTAAGCTCCTCCCACTTCAGTTACGTCACGTCATATATCTTagaaaagcttgtttcctgataTGTCAATTATTGTTCAAATGTTCATTACTATCCCTAATTAGAAACATATTACAGAGGAATGTcccaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208726 lncRNA downstream 116058 5110114 ~ 5113268 (-) True G176336
TU208332 lncRNA downstream 382185 4840748 ~ 4847141 (-) True G176029
TU208331 lncRNA downstream 388633 4839988 ~ 4840693 (-) True G176028
TU208311 lncRNA downstream 492910 4732382 ~ 4736416 (-) True G176015
TU208248 lncRNA downstream 596541 4630348 ~ 4632785 (-) True G175967
TU208744 lncRNA upstream 2264 5304614 ~ 5407099 (-) True G176354
TU208989 lncRNA upstream 329476 5631826 ~ 5715020 (-) True G176556
TU209305 lncRNA upstream 780478 6082828 ~ 6167802 (-) True G176817
TU209304 lncRNA upstream 869848 6172198 ~ 6176354 (-) True G176816
TU209329 lncRNA upstream 881985 6184335 ~ 6188288 (-) True G176832
XM_026930897.2 mRNA downstream 9087 5199143 ~ 5220239 (-) True chrna7a
XM_034308425.1 mRNA downstream 32509 5157861 ~ 5196817 (-) True trip4
XM_026930779.2 mRNA downstream 95776 5081652 ~ 5133550 (-) True znf609b
XM_034308867.1 mRNA downstream 161835 5050059 ~ 5067491 (-) False gramd2aa
XM_026930659.2 mRNA downstream 161846 5047351 ~ 5067480 (-) False gramd2aa
XM_026930390.2 mRNA upstream 16002 5318352 ~ 5325458 (-) False cdhr5a
XM_026930389.2 mRNA upstream 16002 5318352 ~ 5325458 (-) True cdhr5a
XM_034308478.1 mRNA upstream 58068 5360418 ~ 5366235 (-) True sirt3
XM_026930910.2 mRNA upstream 105246 5407596 ~ 5418681 (-) True LOC113536772
XM_034308710.1 mRNA upstream 105246 5407596 ~ 5415705 (-) False LOC113536772
TU208736 other downstream 32508 5191964 ~ 5196818 (-) False trip4
TU208689 other downstream 38804 5139610 ~ 5190522 (-) False trip4
TU208693 other downstream 148431 5079817 ~ 5080895 (-) True G176307
XR_003403708.1 other downstream 1128900 4100371 ~ 4100426 (-) True LOC113536798
XR_003403707.1 other downstream 1129475 4099795 ~ 4099851 (-) True LOC113536797
trnai-uau_2 other upstream 11812 5314162 ~ 5314254 (-) True trnai-uau_2
TU209010 other upstream 394108 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other upstream 394108 5696458 ~ 5708265 (-) False LOC113536561
TU210154 other upstream 2179099 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 2278084 7580434 ~ 7588815 (-) False si:ch1073-365p7.2

Expression Profile