RNA id: XM_026930606.2


Basic Information

Item Value
RNA id XM_026930606.2
length 3634
RNA type mRNA
GC content 0.46
exon number 12
gene id clcn4
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6831248 ~ 6845245 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGCATGCTGGGAAAGTGACGGCTATTTTATTTACCAGCTTCTAGCTCGCTGAATTATTATATGGAAGCCATAAAGTGGCGCTTAAAacagttattgtttttttataataatggtTGGCTACATAAACAGATATAAGTGAAGAGATATACAGCAGTAATTTCGGGAGAAAGAATGGCGGAGGCAGAAGTGATCAGCAATGCCACCCCCACAGAGGAGATGAACGGGGCTGGGAACCTGATGGACTTCCTAGATGAGCCCATTCCTGATGTGGGCACATATGAGGATTTCCACACCATCGACTGGCTCAGGGAGAAATCCAGAGACACTGACCGCCACAGGAAGATTCGAAACAGGAGGAAGGAGTCTGTCTGGGAGTTTGTAAAGAGCCTACTGGATGCCTGGTCAGGATGGGTGGTCATGCTGCTTATCGGACTACTGTCAGGCACTTTGGCTGGAGTGATAGACCTGGCTGTGGACTGGATGACAGACCTCAAGGAGGGAGTTTGTCTATCTGCATTCTGGTATAGCCATGAGCAGTGCTGTTGGACATCCAACGAGACTACGTTCGCCGACAGGGACAAATGCCCTCAGTGGCAGAAATGGGCCGAGTTGATGACAGGACACACTGAGGGTGCTGGAGCATATGTGTTAAATTACTTCCTGTACGTGCTATGGGCACTGTTCTTCTCCTTTCTGGCTGTGTCTCTGGTGCGAGTGTTTGCCCCATATGCTTGTGGATCAGGAATACCAGAGATTAAGACAATCCTGAGTGGGTTTATAATCCGAGGTTACCTGGGGAAGTGGACTCTGCTGATTAAGACAGTCACTCTGGTGCTGGCCGTGTCGTCCGGTCTCAGTCTGGGAAAGGAAGGACCACTGGTGCACGTGGCCTGCTGCTGTGGAAACCTCTTCTGCAGCCTTTTCTCTAAATACAGCAGGAATGAAGGCAAACGTAGAGAGGTTTTATCCGCTGCTGCGGCTGCTGGAGTGTCTGTGGCGTTTGGTGCTCCAATAGGCGGGGTGCTTTTCAGCTTAGAGGAGGTGAGTTATTACTTCCCTCTTAAGACTCTGTGGCGCTCGTTCTTTGCTGCACTGGTTGCCGCCTTCACACTGCGCTCTATAAACCCATTCGGCAACAACCGCCTGGTGCTATTCTATGTGGAATATCACACACCATGGTACATGGCCGAGCTAGTTCCCTTCATCCTGCTTGGGGTATTCGGAGGCCTCTGGGGCACCCTGTTTATCCGGGGGAACATTGCCTGGTGCCGCCGCAGGAAGACCACTCGCCTAGGCAAGTACCCTGTCCTGGAGGTAATAGTGGTGACGGGCATCACAGCCATCTTGGCTTTCCCCAACCCGTACACACGCCGCAGCACCAGCGAGCTCATCTCTGAGTTATTTAATGACTGTGGTGCTCTCGAGTCCTCCCAACTCTGCGATTACATCAATAACCCCAATATGAGCCGTCCAGAGGATGATATACCAGACAGACCAGCCGGGCCAGGGGTCTACAGCGCCCTCTGGCAGTTGGCACTTGCTTTGATCTTTAAGATCGTCATCACCATCTTTACTTTTGGCATGAAGATCCCATCAGGTTTGTTCATCCCCAGTATGGCAGTGGGAGCTATTGCTGGACGGATAGTGGGCATCGCCGTGGAGCAGATGGCCTACCACCACCATGACTGGATAATCTTTAAGAACTGGTGTCGCCCTGGTGCAGACTGCGTCACCCCCGGCCTCTACGCCATGGTGGGGGCCGCAGCATGTCTCGGTGGAGTCACTCGGATGACTGTGTCTCTGGTGGTCATCATGTTCGAGCTGACTGGTGGGTTAGAGTACATTGTGCCGCTAATGGCCGCTGCTGTTACAAGTAAGTGGGTGGCGGATGCGTTCAGTAAAGAGGGAATTTATGAGGCACACATCCGCCTGAACGGTTACCCGTACCTGGACCAGGACGAGTTCACCCACCGCACACTGGCCACTGATGTGATGCGACCACGCAGGAATGAGCCTCCACTCTCCGTCCTCACACAGGACTCCACCACAGTGGAGGATGTAGAGATGCTCATCAAAGAGACGGACTACAACGGCTTCCCTGTGGTCGTCTCGCGCGAGTCCGAGAGACTCATCGGTTTTGTCCAGCGCAGGGATCTGACCCTGGCTATCAAGACTGCACGTCAGAAGCAGGATGGCGTGGTGAGTAACTCAGTAGTGTACTTCACTGAGGATGCACCCCAGCTGCCAGCCTCAAACCCTCAGCCCCTGAAGCTTAGGCGAATCCTCAACCTCAGTCCCTTTACCGTCACTGACCACACACCTATGGAGACTGTGGTGGACATCTTTCGCAAGCTCGGCCTTCGCCAGTGCCTTGTCACTCGCAGTGGACGGTTACTCGGGATCATCACTAAGAAAGATGTGCTACGACACATGGCCCAAATGATGAACCAGGACCCTGAGTCAATCATGTTCAACTAAAAGCCCTTCTCCATCTCTGACCTTTCACCTTGTAAGGCCAGTGACCTCATGAACCTTACGGACTGTAAATAGTGCAACACTACTGTAACTGCAAGTATTTACTCGTGTAGAAGTGTAATACCAAACCCTTATGTGTTTTGTTGCCAAAAAAGATCAGAATCTGAAATGAAGACCTTGGATGATGTGCATGGCAACGTTTAGAGGCAATCAGGTACCATGAGATACAGTCACATATTCTCTCTTTACAGTATTTGATGCTTGTTGTATGAAACCCAGTCTGTTGTAAATGACAGTGGATCTTGTGTAAAATACTCGaagataatataatatgatgtcAGAAGACAGTAATATGCTTCCAGCTGCCCTGATTAGGATTCTTTGTTATTAAAAGGTCAGTGGACTTGTAACAATCTTTACATAGCCTCACAAAGTTGCTGTGCATCaggtgcagaaaaaaaaggtcaagTATTTTAAGTTACTGTAACTTGTGTTGATCTTACTGCTGCTgccatattcattttttattaacataaatcATTAGACTTTGCTATTATAAAATATTCCCTGTTATAACGGATGTGacaaactgaaacaaaactGGTACAGATCATAAAAGATACCTTTAAGTAGTTTTACTCTTACACTCACAAAACAAATCAATCCACATTGAAGGTAGTTTATTTTATGCAGGCTTTAACTACAGGATTAAACATAAGAtgctgattatattatattatatgattaGCTCTTAAATTTTAGGGATTAGGGTAAGTGTCTGCATTTTTGCACCACGGAACAGTAGCTTGTTAAGAATGGTGATGTGACAACAGATCTGCCTTAAATATCAGGATTATGGTAGTACTACATTTTGCTCATATTTGTTAAtttaatgtgaatatttatttagatcTGATATAAAAAAGTCAGATGTTGTGTTACATTTTTTGTGACTGTGGTaagtttgtatatttttatgtgCACTTTCTGCATTTGCTTAGTACTAAAATACAAAATGGCAGAGTTGTATTAAATGGTACGAACCTAATTGTTTTAATTGCCAATTATATGCAAAAACCtctaatgaattaataatttaaaaaaaggaaaagggaaTTTGCTCAATTTCTGcttataattattaaatcatttaatcaA

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0044070 regulation of anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030554 adenyl nucleotide binding molecular_function
GO:0005247 voltage-gated chloride channel activity molecular_function

KEGG:

id description
K05012 CLCN3_4_5; chloride channel 3/4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209633 lncRNA downstream 92640 6738321 ~ 6738608 (-) True G177097
XR_004579067.1 lncRNA downstream 241952 6579004 ~ 6589296 (-) False LOC117598400
XR_004579068.1 lncRNA downstream 241952 6580360 ~ 6589296 (-) True LOC117598400
TU209513 lncRNA downstream 279666 6551325 ~ 6551582 (-) True G176991
TU209514 lncRNA downstream 279986 6550914 ~ 6551262 (-) True G176992
TU209925 lncRNA upstream 13294 6858539 ~ 6859489 (-) False LOC113536608
TU209973 lncRNA upstream 213287 7058532 ~ 7059550 (-) True G177374
TU210004 lncRNA upstream 292384 7137629 ~ 7138904 (-) True G177404
XR_004579109.1 lncRNA upstream 310983 7156228 ~ 7157621 (-) True LOC117598441
TU210062 lncRNA upstream 422316 7267561 ~ 7271271 (-) True G177448
XM_034308534.1 mRNA downstream 14535 6809823 ~ 6816713 (-) True LOC113536768
XM_026930731.2 mRNA downstream 24218 6794539 ~ 6807030 (-) True swap70a
XM_026930337.2 mRNA downstream 180113 6648748 ~ 6651135 (-) True adma
XM_034308783.1 mRNA downstream 188143 6621904 ~ 6643105 (-) False ampd3a
XM_026930663.2 mRNA upstream 11510 6856755 ~ 6861348 (-) True LOC113536608
XM_034308838.1 mRNA upstream 16106 6861351 ~ 6886413 (-) False shroom2b
XM_034308837.1 mRNA upstream 16106 6861351 ~ 6886413 (-) False shroom2b
XM_026930660.2 mRNA upstream 16106 6861351 ~ 6886413 (-) True shroom2b
XM_034308839.1 mRNA upstream 16106 6861351 ~ 6872247 (-) False shroom2b
TU209010 other downstream 1122983 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 1122983 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 1516994 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 1540654 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 1634430 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 636204 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 735189 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 735189 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 735189 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 735189 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile