RNA id: XM_026930607.2


Basic Information

Item Value
RNA id XM_026930607.2
length 2122
RNA type mRNA
GC content 0.42
exon number 9
gene id traf3ip2b
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6823407 ~ 6831740 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGTGCATTAAtttcactaaacatttaatttacacaaaacacacacacaaaatagatACACACATGCTCTGACTGGCGCTCTGACCATTCACCCATCCTCAACTCCCACAGCCACATGGCTCATCAGGGTCAACATCACAAATCACTTAACTGTCCTGAGGAAAACGATGAGACACGGAGTGAGGAGTTCCAATCTGGACTTCTCCTAGCACCAAAGACCTCTCTCAATCACTCTGTTGCCCTAAGCAAGGTGGTGCAAGGACAGACTTTTAGCCACCAACACAACCCTATGAGGCCCAGTCTTACCCAGTCCTGTGTAAAATTGATCCAGCATGATCAATTAACCAGACCCTGCCAACAGGTCCTGTACCCCAACCAAGTTGATAGTGACAGAAGACATCTGGGGGTTCATCGTGGCTGGCACTACCCCACCTACAATAGCAGAAGTCCTGGAGGAGGTCAAACAAGCAGTCTACCATCGTACTTGCCCTCTACTGAGTACCAGACTTACCTGGGGGCTGGCTGTGTTTTTCCCAGTTGGCATCACTCCCATCCAGGTACACACAGCCTCAGCCTCAACAGTCTAGAACAGCCTGGCTCTCTGCACTCTTTTCTCACAGCTGGATCTTCCGTACACACCAACCAGTTGATGCCATTACCTGACCTCCACTATGGTCCAGTTCCACACCAAGTAGACCCTCAGGATTATCTCATCCCCAGGCCTGGATATCAGCTGCCCCACAgattcaaagATCCTGAGCTATTAGGATACACAGATCCAGGTAGCACTAAAAATGGTGCTGTTTCTTGCAGACCTGGCCAGAAAAGTCCCTGCAGCACACAGCTTTCTCAGGAACAGAgaaaagtgtTTGTTACATATGAGGTGGACAGCGAAGATCATCTTAAAGAGGTCATCAAGTTTGTGGCCTTGTTGAGGAACAATGGCTTTGACACACACATTGATGTTTTTGAACAGCAGCTCTACAGCATCAGTAAGATTGATTGCATGGAAAGATATCTCAATGAGAAAGATTACATGATTATCATGGTCATTAGTCTGAAGTATTTTGAGACAGTAAAAGGTGCTGGTGTAGGTGTGGACTGTGATGAGAGGACCTCAAACACTGTGTACATCCACAAGCAGCTTCAGAGTGAATTCATTCAGAATGGCTGCAGAAACTTCAGGGTTGTTCCTGTGCTTTTTCCTGGGGCTAAAAAGAGCCACGTTCCCTTTTGGCTGCAGAACACATATCTGTACAGCTGGCCTGGGGACCGGGACGATATTCTGCGCCGGCTCATGCGAGTGGAGAAGTACAACCCTCCACCTGTCGGCTCACTGCCCACCATCTTCTCCACGCCTATCTAACTAGCCCAGACGCAGTAgggacaacaacaacagtgcAGCAGTGTCTTAAAACTAAAATTTGGCCAGCTGTATGATGGGACATGCACAGTCAGTATAGATACAGGTGTTAAATGTCATGCTTGCCATCATGTATAAGAAGAGATAAGAAGTTATATGTACATTTACCAAATCTGCATTTTAGCTAAGAAAAGTGGGTTACTCACATATATAGGAATATTTGGAAACAGGTGAGGAAAACAGTCTTCAAGAAAGATGTCCAGAAGTtgattaaatgatttaataattataagCAGAAATTGAGCAAAttcccttttcctttttttaaattattaattcattagaGGTTTTTGCATATAATTGGCAATTAAAACAATTAGGTTCGTACCATTTAATACAACTCTGCCATTTTGTATTTTAGTACTAAGCAAATGCAGAAAGTGcacataaaaatatacaaacttACCACAGTCACAAAAAATGTAACACAACATCTGACTTTTTTATATCAgatctaaataaatattcacattaaaTTAACAAATATGAGCAAAATGTAGTACTACCATAATCCTGATATTTAAGGCAGATCTGTTGTCACATCACCATTCTTAACAAGCTACTGTTCCGTGGTGCAAAAATGCAGACACTTACCCTAATCCCTAAAATTTAAGAGCtaatcatataatataatataatcagcaTCTTATGTTTAATCCTGTAGTTAAAGCCTGCATAAAATAAACTACCTTCAATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209478 lncRNA upstream 268400 6554594 ~ 6555007 (+) True G176964
XR_004579052.1 lncRNA upstream 723380 6094203 ~ 6100027 (+) True LOC117598391
TU209210 lncRNA upstream 747980 6070947 ~ 6075427 (+) True G176746
TU209160 lncRNA upstream 871252 5951814 ~ 5952155 (+) True G176700
TU209054 lncRNA upstream 966165 5855525 ~ 5857242 (+) True G176608
TU209715 lncRNA downstream 27564 6859304 ~ 6860230 (+) True G177159
XR_003403689.2 lncRNA downstream 32085 6863825 ~ 6875047 (+) True LOC113536609
XR_004579087.1 lncRNA downstream 38740 6870480 ~ 6873058 (+) False LOC113536609
TU209724 lncRNA downstream 53838 6885578 ~ 6886403 (+) True G177165
TU209692 lncRNA downstream 73229 6904969 ~ 6907752 (+) True G177141
XM_026930866.2 mRNA upstream 1294 6820804 ~ 6822113 (+) True LOC113536733
XM_034308913.1 mRNA upstream 1655 6820804 ~ 6821752 (+) False LOC113536733
XM_026930509.2 mRNA upstream 41208 6656484 ~ 6782199 (+) True sbf2
XM_026930510.2 mRNA upstream 41208 6656484 ~ 6782199 (+) False sbf2
XM_034308662.1 mRNA upstream 41208 6656484 ~ 6782199 (+) False sbf2
XM_026930767.2 mRNA downstream 19700 6851440 ~ 6853641 (+) True LOC113536670
XM_026930268.2 mRNA downstream 58448 6890188 ~ 6900065 (+) True LOC113536389
XM_026930539.2 mRNA downstream 85367 6917107 ~ 6940664 (+) True trappc10
XM_034308708.1 mRNA downstream 85367 6917107 ~ 6940664 (+) False trappc10
XM_034308812.1 mRNA downstream 119354 6951094 ~ 6953455 (+) True LOC117598414
TU208265 other upstream 2162271 4656605 ~ 4661136 (+) True G175977
XR_004579071.1 other upstream 2526160 4281244 ~ 4297247 (+) False nadsyn1
TU207714 other upstream 3165131 3647370 ~ 3658276 (+) False btbd10b
TU206600 other upstream 4744780 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 4763124 2058970 ~ 2060283 (+) True G174536
XR_003403680.2 other downstream 290645 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 436144 7267884 ~ 7271320 (+) False rpl37a
trnae-cuc_24 other downstream 770486 7602226 ~ 7602297 (+) True trnae-cuc_24
trnar-ucg_6 other downstream 1411682 8243422 ~ 8243494 (+) False trnar-ucg_6
trnar-acg_6 other downstream 1413212 8244952 ~ 8245024 (+) True trnar-acg_6

Expression Profile