RNA id: XM_026930610.2


Basic Information

Item Value
RNA id XM_026930610.2
length 3362
RNA type mRNA
GC content 0.46
exon number 22
gene id tmc6b
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7079500 ~ 7108209 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCTCAGATTGGAACTGTCTTCACTAATGGGACTGCAGAAAGCTTTTTAATGGAGCTGAAAAGGAAGCTGTCTGCCGCCCTACGtatacagaaatacacacagttGCGGTTCGGTTGTTGAGAAGGTCAGATTTTCAGCAGCGGTGACCGGTGACTCGGAGCTGATGCAGAAGAATGACAGGAGGTAGGAGCAAGTGCAAAGCGTTTAGCTTGTGCGTGTCAGTGAACTTTGAGTGACTGGTTGAGGCAGGACCCTCGGACTACAGTGGAGATGGCAGCTCGTAGCGTGAACTTCGACATAGATGCCCACGTAATGGAGGCAGGGCTGGAAAGTCCTGCGGATGAGGATGTGGTTCATGACTCTTTCAATCAGCTTATTGAGGAACAGAGTCAAGATCTAAACAGCCATGCAGAGGCGATAGAGATGTACCCTCTAACGGAAGAGACCggagATGATGTTTCATCCTTTGCTGTTGATGAGTATGGTGGGATGACTGAACCCTTGATGGATGAACGCTGGTCTTCAGCCACTCTCAGAGTTCTGTCCTCAATGCCCAGTCGCACCATTGgACGCAGTCGAGGGGCAATCCTCTCTCAATATTATACCCGCACTATGCAGATgtgcagacacagacagagccGACCCTCCATCCGCTCTTTCTCCCGGTCTGCCCGGCCCAGCATCTGTGGCCATCGTGTTGACAACAATGCTGAGAACTTTGACCGGGAGGAGAATAAGAGGGAGCGGCTGGTGAATAACTTGCAGAACCTGTCTGTGGGTGATCGAGTGCGTATGCTGAAAGCTATTCCATTGAGCTTGACAGAGAAGAGTGAACTCAGACGTTTGGCCTTGAATAAAACTGGCCGCTCTATCTACCTCGACCAAGTCCCCTGCTGCAGCCACCTCAAAGACCGTATTTTCATTGCTCTGAGACAAAGCTGGTACAGCTGGCTGTCCTTCCTCTCCTCACTGCAGTTATGGCAGACGGCTCTGAAGACAGTGAGTGGCCGCTTCGGGACAGGTGTCCTCTCCTACTTTGTCTTCCTCAGGAAGCTGTTCTTCTTTAACGTTTTCCTATTCATGGTGATGGGGCTCTTCCTGGTGGTGCCCCAAGCCGTGCAGCCTCCGGTGCTAACCTCAGTCACATCTGTACAATACGGCCTCGAGGTGCTCACCGGGACGggTTATTTTAAGGACTCCTTGATGTATTACGGCTACTACAGTAATTATACTTTCATGAACTGCAGCCATGTTGAAAATCAGGGTTCCTGTGGCACTCATCTATCCTATAACATGCCTCTGGCCTATTTCTTCACCATTGGAATGGCATTCTTCATCACCTGCATCATCCTCGTGTACAGTATGTCCAAGTCTTTTGGACAGAGTTTCCGGATTGACCGGTCCAAAGGTCTGCTTGCCATAAAAGTCTTCAGTTCTTGGGATTTTAAAGTCAGCAAGAAATCCTCTGTTAGACTGCAATCTGAAAACATCACCACTCAGCTCAGAGAGTTGGTGGCAGAGGTGAACCGTAACAAGGTGAAGTCTTCGTTCTGGCAGCGTATGTCAGTTCTGTCCATCCAGTTGCTGGCTTGGATAATATGCATTGGGAGCACTGTAGTGTGTTCCCTTGGCGTGTACTACTTCTCAAAGGATGTGCACAAGATATACGCAAACAATACCAATAACGACCTGCGGAAGGAAACTAGCATGCTGGCGCTCCCTGTGATTGTGTCTACCATTAACCTGCTCCTTCCCGGCTTCTTCAATGTTGTGGCCTGGATGGAAGATTACGAGTCGCCATGCACACGCAACTACGTTGCCGTTTTCAGGAATTTAATGCTGAAAGTGAGTGTGCTTGGAGTCTTGTGTCATCATTGGCTAGGTCAAGTGGCATCTGACCAAAAGCAGTCACAGTGCTGGGAGAGTTTTGTGGGGCAGGAACTATATAGATTCCTGCTAATGGACTTCATCTTCACAATGCTCGATACCTTCTTTGGAGAGTTTCTGTGGAGATTGTTTTCGCAGAAGgttctgaagaaagaaagaaagccggTGTTTGATATTGCCCGGAATGTTCTCGAGCTCATATACGGACAGACATTAGCTTGGTTGGGAGTGTTGTTTGCGCCCCTCCTGCCTGCAGTGCAGGTTATCAAGCTGTTCCTGCTTTTCTACATGAAAAAGACGAGTCTGATGATGAACTGTCAAGCTCCCAGAAAGCCATGGAGGGCGAGTCAGATGACCACCTTCTTCATCACCCTCCTCTGCTTCCCCTCCTTCCTGGGCGCATCGGTGTGCGTCACCTATACCATGTGGACGATAACACCATCAAAGAGCTGTGGGCCGTTCCGTGGCCTCAACACCATGTTTCAGGCAGGTAAAAAGTGGGTGGAGAAGCTGGCCCATGATAACCCCCATCTGACCTGGCTCACCTGGGTTCATACATATCTGGTGGAGAATCCTTTCTTCCTGTTTCTCGCTGCTGGAATCTTCCTAATAATAATCTACTTCCACAGCCAAGTGGTGGATGGACAGAGGAAGATTATAGAGCTGCTACAGGAACAGATTGAaaatGAGGGGGAAGACAAGAAGTTTCTCATCACTAGATTACAAGACATCCACGAGCAGAAACGTCCAAATTCCCAGCGTCGCAGCAGGGCAACCAGAGAGGAGTCCAGTTTCACATGACTTCTCCAAGTCGTCTGCATCTCGGTGTGAAAAGTGTAGAGTTGCAAGTGGAGCCCTCTGCTGTCCTGGAGCTGTATTACAGGCTAATGGAAGTAACACTGCAAGTTCTCCACAGGCATTCCTACAGCTTGGTGTGTAGGGGATCATACCAATTGATGCACTTAAGCTTTTACTGGACTGCACAGAAGCATTTTAATGCTCCttaaaggaattttttttaatattttcaatttcaaGCCGTTTCATCTTGCAGAAACTTGCACATTTCTAGAAATGTTTTCTAGTATATTTCTAGTAAAACTTtttactttcaaaaaaaaaaaaagagagagagcagggtAGGAAAATGTTGTAGCACGAAATGAAATGCAACATATGCACCTGAGGAAGCATGTAATTCTATAATCAAGTctgtgaaaaaatatttatgtaatggTCATCTTATTCTAAAAGGTgaatttaatatgtatttaaaatatagagGTTATTACAATATCTCATCACAAAGTACAAGCTCGCTACTCACACATCGAGGGGAAGAACCACTGAACAAAgggattttccattttaattttggactcatttgtttttttttatacagtaaatGATTTTATAGAATGATTTTTGTATTactctgttttaaataaataaaaaaaaaatgtaaagtctGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209973 lncRNA downstream 19950 7058532 ~ 7059550 (-) True G177374
TU209925 lncRNA downstream 220011 6858539 ~ 6859489 (-) False LOC113536608
TU209633 lncRNA downstream 340892 6738321 ~ 6738608 (-) True G177097
XR_004579067.1 lncRNA downstream 490204 6579004 ~ 6589296 (-) False LOC117598400
TU210004 lncRNA upstream 29452 7137629 ~ 7138904 (-) True G177404
XR_004579109.1 lncRNA upstream 48051 7156228 ~ 7157621 (-) True LOC117598441
TU210062 lncRNA upstream 159384 7267561 ~ 7271271 (-) True G177448
TU210074 lncRNA upstream 181708 7289885 ~ 7290092 (-) True G177455
TU210078 lncRNA upstream 184740 7292917 ~ 7293170 (-) True G177459
XM_034308712.1 mRNA downstream 23576 7018805 ~ 7055924 (-) True aspscr1
XM_034308711.1 mRNA downstream 23815 7018805 ~ 7055685 (-) False aspscr1
XM_026930530.2 mRNA downstream 24019 7018805 ~ 7055481 (-) False aspscr1
XM_026930529.2 mRNA downstream 28117 7018805 ~ 7051383 (-) False aspscr1
XM_026930786.2 mRNA downstream 67985 7009298 ~ 7011515 (-) True LOC113536680
XM_026930690.2 mRNA upstream 42502 7150679 ~ 7154709 (-) True tk1
XM_026930727.2 mRNA upstream 72031 7180208 ~ 7190834 (-) False ogal
XM_034308948.1 mRNA upstream 72031 7180208 ~ 7190826 (-) False ogal
XM_026930726.2 mRNA upstream 72031 7180208 ~ 7190813 (-) True ogal
XM_026930817.2 mRNA upstream 84078 7192255 ~ 7202864 (-) False si:dkey-93h22.8
TU209010 other downstream 1371235 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 1371235 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 1765246 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 1788906 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 1882682 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 373272 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 472257 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 472257 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 472257 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 472257 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile