RNA id: XM_026930613.2


Basic Information

Item Value
RNA id XM_026930613.2
length 3347
RNA type mRNA
GC content 0.43
exon number 15
gene id ankdd1a
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8572475 ~ 8589352 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGAGGCAAGCGTGCTAACCACTAGGACACCGTGTCCTCTCGTGCGTCAATCCCACACAATGAAAAGATCATTTTTGTTTGCTTAACCATAACGCTGGGCAGGTGCAGGGGCTGGCTCGCTGTCGGAAAGCAGCAGGCTGAGCACTTCAGCACTATTTTCCTTCCTCCAGGGCGGAACTGTAGCGAAAAAACCTTTATATGTAACTGTATAGCGCCTTTTATACAATTTATAGTTTAGAGGCTAAACAGTAGATATTTGGTTTCCGTGACTTTAAGTGTGAGATGTGTAACGgtaatgaaaacatgaaagTGACTGACCATGAACCCCGCCTAGTCTGTTCAGGACGTTTTCGACACTGTTTGGTTCATATTCCTGAGTAAGCTGATCctgtaaaacactgaaacacgAATATTTCGAGAACATTACCAAGAGCTGCTCATGAATGTAGCTCAGGGAGGTTTAATACAACCTCGGAGGAACCGGAGCTAAGCGCCGCTAGCCGCTCGAGTCGTGTGAGGATTTGTCAAAcgctcatttatttatgtttacacaAATATATCTGCTACAGGATGGAGGACGGCTTGGCGTCAGAAGACGACATCTTGCTGCACTCGGAGAAGGTGTTTCACAATGCTGCAAAACGGAATGACACAGGAAAGATGCTGGAGCTTATTAGGAAGGGGGTGGACatcaaagttaaaaataaaGCAGACAGGAAGGCACTGCACTGGGCTGCAGGTGCAGGTAGTGAAGATGCTCTGCGTCTGCTGCTGGAGCACGACACTGAGCTGGATGATGCAGACAGTTTTGGCATGAGTGCACTGCTGCTGGCAGCGTGGTTCGGTCACCTTAAAATATTGCAGATCCTTGTCTCATCTGGTGCCAAACTCAACTGTGAAAACAAAAATGGGCTTAATCTTCTGCACTGTGCTGCCCAGCGAGGTCATATTCGTATTCTGGAGTACATCATGGAGGATCTGGAAGATGTACGACTTGACAGAGTTGACAAGTCAGGTAAGACAGCATTTCACCTGGCAGCAGAACATGGACAGTTGGAGGTGATGGAGTATCTTATTGGCATGGGCTGCGCTCACGACCTCAAGGACAAGGAGGAGAACACTGCACTCCATCTGGCAGCGAAACACGGCCATGCAGAGGTTCTCCAGAAGATTCTGGAAACAGGGGAGAACATCAATGAGAGGAATATTGATGGTCTGACCGCTTTACACTTGTCTGTGGATGGAGGGCATTATGACTGTGTCAGGCTGCTGCTTGAGGCTCACTGCAACATCAACGTACTcacaaatAGGAACATGACGGCTCTTCACTTTGCAGTCCAGCATGGATCTGAAAGAGAGGTCAGGCTGCTTGTAGAAGCTGGAGTAAGTGTGGACTCAGTGGACATTAACCATACCACCGCACTACACTTGGCAGTGTTCAACAACTACACAGAGATTGTTAAAATACTCATTGATGCAGAATGTGACCTAGATATACTTGATGAGCGACATCAAACAGCTCTGCACATAGCAGCAGAACACGGGCGCCAAAATATAGCTGAACTGATCCTCATTGCTGGGGTTAACCTCAAACTTCTCGACAAGCAGGGAAAGACATCACTGGACATTGCAGCCAGAGGCAATCATGTGAACGTGGTCGACATGATTATCAGAGCAGATAGATTTTATAAATGGGAACAGGACAATATGAGCTCCGCTGGATCGTTAGTGGGAAGAAATTTAAACTTCAAACAAGATCATCAGCAGGAGACACAGCATATTCGCTCCATCTTATGGAAGTTAGCCACCAAACACCTGAAAGCTGGGGAGTGGAAGACACTGGCGCAGCACTGGCACTTCACAGACGCGCACATCCGAGCCATAGAACATGAGTGGACAGGTACTAAAAGCTATAAGGACCATGGACATCGCATGCTGCTGATCTGGCTGCATGGTGTGTTGATTGCCAGAGAAAACCCCATTAAAGGCTTGTACGAAGGGCTGATGGGAATCTCAAGGATGGATCTGGCAGAGAGTACGCGACAGCAGGCCAATGCAGACCCCAACACTCCTAAGAAGTGCACAACAATGTGAAACAGTGTTGTCTTGAAACACGCTGAAGAAATTATGTTTACAGCAAATAATACAAGATGAAACACAGACCAGAGCTTAGTATGCAATAGAATATGAACCCAGTTTTCCTCAACAACACACTGATTCAGTGAGTTTTGAAGGGCTACTACAGTACCATCTGTTGATTCTTGCAACAATGAAAAGTGACAAATTGAGCATTTTAGTTTTATGCAAATAGATAGAATACTGtgaagcgacaaatccaaatccaaaccCAAATGACTGGGTAAATTCCTCAGATGCGGGTTGTCTGATGTTCCCCAGTTCTACACTCCCAGCTTTTAGGTCCtacttacatttattttctataaaattaGCTTTCAATGAAACTCAGATTAGATTAGGCTCAGATTAAAGAAACCAGGAAAGTTATGAACACAATATTTCGTTCAGAGATAAAACTGAACAATAGCTAGGAGTCTTTCCATTTTCAAACAACTGCAAACAAAAATTGCAAACCAGCAAAGCCAACATGGTGATAAATTCTGCCTATAGTTTAAAATGTTGGACAGCACAACAGTAGCTCCTACTATATAATATCACAAATGAAAACAGTAGCTGCTTAGTACAGTTTTAGAGGCAAACTGGACCAACATCAGCAACTTTCAATTTGTCATGAATCCAGGGTTAAGAGGCTACAGCTACAAGCACTGTGTTACTTATTTTCCAATACTTATTTTCCAATTCCAAACGTTATTATAATTGAATCCGTTTTTATGAATTGCATTGCCGGTGTAATGTCATTCAAGCGTTATCATTAAATTAAGCAACTCGCACAGCACTCTTTAATTGTGGCTGTCTCCTGAGCTAGGTTTGACTAGAGGTTTTGGCTCACTAATGACTCTAATGACTCGACAATTGAGGAGCCAAATTGTGTAAAATGGAGATAAATATCCAACAAAGGAGACTTGTCAGTGTTTGCAGTCTTATGCTGGAACAGTCACTTTCTTCTCTAGATTTTATCTTATTCAGTGTTTACTATGTCCTGCTAATATAATATGaagatttacattttcattacatacatataaaaactTGTTATTTAAGATAGctctactgttttttttgtaaatagagTCACTGTTTACACTTGTGCACAATGCATGGCTTTAATCTGATGTTTATATCACATGTTGTAGCATGAAAAGCATTATGGCTTTTAATGATGTCAAGACTTGGGTTTAACTGtgacttaaaatattaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210939 lncRNA downstream 50390 8521801 ~ 8522085 (-) True G178208
TU210754 lncRNA downstream 248311 8323619 ~ 8324164 (-) True G178057
XR_003403692.2 lncRNA downstream 297115 8271107 ~ 8275360 (-) True LOC113536653
TU210491 lncRNA downstream 645417 7926293 ~ 7927058 (-) True G177807
TU210396 lncRNA downstream 821669 7728913 ~ 7750806 (-) True G177733
TU210961 lncRNA upstream 3834 8593186 ~ 8593405 (-) True G178227
TU211159 lncRNA upstream 121825 8711177 ~ 8712118 (-) True G178398
TU211259 lncRNA upstream 393866 8983218 ~ 8984148 (-) False asb7
TU211271 lncRNA upstream 414292 9003644 ~ 9003852 (-) True G178501
TU211458 lncRNA upstream 597719 9187071 ~ 9189914 (-) True G178673
XM_026930548.2 mRNA downstream 7567 8550368 ~ 8564908 (-) False clpxa
XM_026930546.2 mRNA downstream 7568 8550368 ~ 8564907 (-) True clpxa
XM_026930549.2 mRNA downstream 7569 8550368 ~ 8564906 (-) False clpxa
XM_026930547.2 mRNA downstream 7569 8550368 ~ 8564906 (-) False clpxa
XM_026930326.2 mRNA downstream 22864 8544942 ~ 8549611 (-) True pdcd7
XM_026930526.2 mRNA upstream 6828 8596180 ~ 8612306 (-) True plekho2
XM_026930411.2 mRNA upstream 218235 8807587 ~ 8924385 (-) True lrrk1
XM_026930283.2 mRNA upstream 337460 8926812 ~ 8950809 (-) True aldh1a3
XM_026930818.2 mRNA upstream 393830 8983182 ~ 8995113 (-) False asb7
XM_026930819.2 mRNA upstream 393830 8983182 ~ 8994947 (-) True asb7
trnar-acg_8 other downstream 324713 8247690 ~ 8247762 (-) True trnar-acg_8
trnar-acg_7 other downstream 325700 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-ucg_7 other downstream 327754 8244649 ~ 8244721 (-) True trnar-ucg_7
trnar-acg_5 other downstream 329672 8242731 ~ 8242803 (-) True trnar-acg_5
trnar-acg_4 other downstream 330297 8242106 ~ 8242178 (-) True trnar-acg_4
trnae-uuc_3 other upstream 301275 8890627 ~ 8890698 (-) True trnae-uuc_3
TU211757 other upstream 933064 9522416 ~ 9523330 (-) True G178942
TU211855 other upstream 1224540 9813892 ~ 9815225 (-) True G179035
TU212647 other upstream 2654623 11243975 ~ 11246305 (-) False nppc
TU212749 other upstream 2819740 11409092 ~ 11415440 (-) False G179803

Expression Profile