RNA id: XM_034308846.1


Basic Information

Item Value
RNA id XM_034308846.1
length 2408
RNA type mRNA
GC content 0.45
exon number 10
gene id ist1
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5566660 ~ 5573176 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTAGGAAAATATCGCGTTTCCTGGTTGCTAGCTTGGTGGACGCTAACTTGTTTATTTACACGGTGATCTGTCCATCATGCTCGGTGGTGGATTCAAAGGAGAGAGACTGCGAGTCAATCTCAGGCTCGTCATCAACCGCCTCAAACTACtcgagaagaagaaaaCTGAATTAGCTCAGAAGGCCCGGAAGGAGATTGCGGACTACCTGTCGGCAGGTAAAGATGAGCGAGCACGGATCCGGGTGGAGCACATCATCAGAGAAGATTATCTGGTGGAGGCCATGGAGATTCTCGAGTTGTACTGTGATCTGCTGCTGGCCCGCTTCGGTCTAATCCAATCTATGAAAGAGCTCGATCCTGGCCTTCAGGAAGCCGTGTCCACGCTGATCTGGGCGGCTCCTCGCCTGCAGTCAGAAGTCGCCGAGCTCAAAATCGTTTCAGACCAGCTGTGTGCCAAATACAGCAAGGAGTACGGCAAGCTGTGTAGGACAAACCAAATCGGAACAGTCAATGACCGACTCATGCACAAACTGAGTGTGGAGGCCCCGCCAAAGATCCTGGTGGAACGTTACCTCATTGAAATTGCCAAAAACTACAATGTCCCGTATGAACCCGATGCTATGGTGCGGCCAGAGGTAGGAGAGGAAGCAGACCTCATAGACGTGGACAGCGACTTTAAGAAGCACGGTGGTGGAGGCGGAGGTGGTGGAGGTTTCACTGCACCAGCTGCTGCTATGCCCATGCCTATGCCCATGCCCATGCCAACACCAACAGCCTTCAACTACCCTCCACCCAAAGGAGCTGAGCCCTTCAGTGCTCCTGCTGGCACCTATGATGTTGCCTTTACCAACTTCCAGCCTCCGGTGAGGGGAGGGCAGCCTCCTCAGCTCCCCAGCTGCCCTCCAACCTACGAGTCTATTGATGAGTTGGCTATCAATTCCTCTGATTCTCACCAGGTTGTCCCAGCCCCTGGCCCGTCTGCTCAGATCTACGATAACAACGCACTTCCCGAACTTCCCTCAGTTCCTGACACGCTCCCCAACTCGTCCTTGGGCGGCAATCCCGGGGCGTCAGACGACATCGACTTTGACGACCTGTCACGGCGCTTCGAGGAGCTCAAGAAGAAGACCTAATCTCTCAAAAGCCCACGTCCGTCCAACTGTATGTCTGGTTGATGGAATCTTCGGGAGAAGAAAAGAAGCCCTGGTCAGAATATTTACCCAAAATCTTCATCTGGAAGCAATGATTTCTAATTACGTCTGACATCAGTGTAACATTTACCTCATGcgaaaaaaaatgcactggtGTCTTTCTGGTGGAGGTTATTTTAATCATAACATTGCAACATGAAGGATCTGATGGAATATGAGCACCATAAGTCAAGACTTTTCACTAGACTATTGCTATAATCCCTTTTTTAAGCACTTTCCATATATGGCCtttctgtaatgtaatgtaatataatatagctAGAGCATTGCCATGCCCAGATTGTGTGATGTCATGGTCAGGCCACCTTTTAACTTTGTTACTGTCATGtacctggattttttttccattgagtGATAAAagaacatgatttaaatattaataataagaacGATTTAAGCCAACCCCTAGTGTTCATGCTATGTCAGAGGTGTTAAATGAGCCAGCAGTTGTTTTCAGTACTAACAGAACAGACGGGTTTAACCTGATGCCGTTTATTACACCCAGCGTCGAGGCAGGGACTTTCCCAATGACTTAATCCACCACGTGAGCTACGTCACGGCTCAACAGGGCTGATCTGATTTGTCATGTGACCTGAATATCTCTGCAATGACATAgctaaaaaaagatgaaattaGCAAAGCATCTCCTAATATTGAGTAAGTGAAATATTAAGAAGTGACAGCAGACTTGCTTATTTCTACTTAATGCTCAGAATAACCTTATTAACAGATTTACTTTCTTTTGATAAGACAAAAGTTTTCACATGAGAACACATGGTCTTAACAGCTGACAAAATGACGCACTGGTCTTTATCTTGGAAGCAAACACTCCCAGTAGTATTATTACCTTCgtcattatattatcatctcCTGATCTGTGGCCTtgccttttttccatttagGTCCAGTTTCTAACTGTatatcaattttttttggtgaagggtttccttttgtttttttattcttggcTTCTGGAGAGTGTTAATATTTTTGACAtataaaaactgttttgtttgtatagTTCCAAAGTccttggcttgttttttttcctttcctgtaACACTACTGTGCAGtgatgtttctgctcagatcagCTAAAGGAGCAATATGGGAGCTTTAGGAATGCTTGTTACTAGTTTTACCATGTAGTGGAAACATATCACATGGTCATATGTAATAAAGTATATTTGCTCATAA

Function

GO:

id name namespace
GO:0007032 endosome organization biological_process
GO:0048675 axon extension biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208744 lncRNA downstream 159561 5304614 ~ 5407099 (-) True G176354
TU208726 lncRNA downstream 453392 5110114 ~ 5113268 (-) True G176336
TU208332 lncRNA downstream 719519 4840748 ~ 4847141 (-) True G176029
TU208331 lncRNA downstream 725967 4839988 ~ 4840693 (-) True G176028
TU208311 lncRNA downstream 830244 4732382 ~ 4736416 (-) True G176015
TU208989 lncRNA upstream 59097 5631826 ~ 5715020 (-) True G176556
TU209305 lncRNA upstream 510099 6082828 ~ 6167802 (-) True G176817
TU209304 lncRNA upstream 599469 6172198 ~ 6176354 (-) True G176816
TU209329 lncRNA upstream 611606 6184335 ~ 6188288 (-) True G176832
TU209358 lncRNA upstream 688068 6260797 ~ 6261240 (-) True G176855
XM_034308452.1 mRNA downstream 21139 5537052 ~ 5545521 (-) False dhodh
XM_026930360.2 mRNA downstream 21139 5537052 ~ 5545521 (-) True dhodh
XM_026930788.2 mRNA downstream 56718 5505917 ~ 5509942 (-) True hp
XM_026930552.2 mRNA downstream 85373 5465673 ~ 5481287 (-) True dpep1
XM_034308719.1 mRNA downstream 114319 5434667 ~ 5452341 (-) True LOC113536779
XM_026930542.2 mRNA upstream 18345 5591074 ~ 5664681 (-) True LOC113536546
XM_026930577.2 mRNA upstream 123651 5696380 ~ 5708304 (-) False LOC113536561
XM_034308690.1 mRNA upstream 139719 5712448 ~ 5760722 (-) True sos1
XM_034308691.1 mRNA upstream 139719 5712448 ~ 5760721 (-) False sos1
XM_026930273.2 mRNA upstream 200828 5773557 ~ 5781153 (-) True LOC113536391
trnai-uau_2 other downstream 252406 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 276066 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 369842 5191964 ~ 5196818 (-) False trip4
TU208689 other downstream 376138 5139610 ~ 5190522 (-) False trip4
TU208693 other downstream 485765 5079817 ~ 5080895 (-) True G176307
TU209010 other upstream 123729 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other upstream 123729 5696458 ~ 5708265 (-) False LOC113536561
TU210154 other upstream 1908720 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 2007705 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 2007705 7580434 ~ 7588815 (-) False si:ch1073-365p7.2

Expression Profile