RNA id: XM_034308972.1


Basic Information

Item Value
RNA id XM_034308972.1
length 2719
RNA type mRNA
GC content 0.49
exon number 14
gene id sv2ba
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7818236 ~ 7845027 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGACTTCTTCCCGAGTGAAACTGAGGGCTGAACACATGAACCAACAAAAACAACTCGCATTAGCTACAAAACATTAGTAATCGCTCCCGGTTTTAACAGGAAGCTCGTTAGCGCCAGCGTCCGCGCGCGCGTTTCCAATAgcaacaggaggaggaggaggaggcgcgCGACGATTTAAGAAGTGATGGAGGGAGAAGCAGCCTGCagagCTTTCAAAGAGAAGTGGTTAACTGTCACAATTGACTCTGAGGCCTATGGTTCAACTGCAGATCCCAGAAGGAAACCCATAAATAGGATATTGTCATCACTACTGGCCTCTGGAGTAGTGATTCTGAGATCCAGACAAAGTGCCTTCTGAGGATTATGCTAATATAGCCAGCTGTGATTTGGAGGATACTAAGGCAATTCTAAAACGTGGTCACAATGGATGGCCATTACCAAAACAACATGCAAGACAATGAAGGAGAAAGCCAGAACACCTACGGAGAGGAAGGTGAGGATGACTACCCCTACCGACCTGAATATCCTGCCCAGGAGGAAGATGCAGCCAGTGATGTCACTGAAGGACAGGATGAGGACGATCAGATGTACGAGGGGGAATATCAGGGCATTGCTCACCCAGACGATATCAAGGAGGCGCGTCGAGCCGCTCGTCGGGAGGCCAGGTTGAAGGCCAAGTTGGCCACCTTGGAAGAGGAAGAGACATTGGCTGAGCAGTACGAGAACATCATGGAGGACTGTGGCCATGGGCGCTTCCAGTGGGCCCTCTTCACCGTGCTGGGCCTGGCGCTCATGGCTGATGGTGTGGAGTGTTTTGTAGTAGCCTTCGCTTTGCCCAGAGTAGAGAAGGGCATGTGCCTGTCCAGCGACAGCGAGGGCGTGCTGGgTCTGATCGTGTATGTTGGGATGATGCTGGGAGCCGTAGTGTGGGGTGGTCTGGCTGATAAACTGGGACGCCGTCAGTGTCTCCTCAACGCTCTGGCCATCAACTGCatcttctctttcctctcctccttttTCCAGGGCTATggcttcttcctcttctgcagAGTCTGCTCCGGAATTGGAATAGGTGGCTCCATCCCCATTGTGTACACGTACTTTGCTGAGTTCCTGCAGATGGATAAACGGGGCGAGCACCTGAGCTGGCTGTGTCTGTTCTGGATGCTGGGAGGCCTGTACGCTTCCTTCAGCGCCTGGGGAATCATCCATCATTATGGTTTCAGTATGGGCACTGAGTTCCATTTCCGCAGCTGGAGAGTGTTTGTTTTGGTGTGTTTCCTGCCCGCGGTGGCTGCTCTCACTGGACTCGTGTTTATGCCCGAGAGCCCACGCTATCTCCTTGAGAATGCAAGGCATGACGAGGCCTGGATGATCCTGCGACGTGTCCATGACACCAACTGGAGGGCAAAAGGTGAACCAGAGAGAGTGTTTCAGGTTTCCCAGTTTAAGTCTCCTCAAACTCAGGAGGATGATTTCATTGAGATCCAGAGCGAGACTGGTACGGCCTTCCAGAGATTCATGGTCAGACAAATGACCCTGGTCAAGCAGgtGATGAAGAacttgatgtcacttgctgccCCTAAACTGAGACTCCACGGATTGTTCATTGCCATTGTCTGGTTTACAATGGCTTTtggCTATTACGGCCTTTCAGTGTGGTTTCCTGACCAGATAAAATACCTGCAGTATGAAGAGTACAAGTCACACACCATGACATTTTACAAAGATAGGATCGAATACTTTCACTTCAACTTTTCTCTGAAAAACCAGATTCACAAAGAGGGCTATTATATGCATGACTGGTTTATCAGCATAGAGATGAGAAATGTGAAGTTTAAGGAGACCCACTTTGAAGACTGTTACTTCGAGGACATCAAGTCAACAGACACCTTGTTTGAGAACTGCACCATCATAAACACTGTTTTCTACAACACAGATTTATGGCCTGATTCCAAGTTCATCGACTGCAACTTCAACAATGTCACATTTGTACATCCCAAAAGCGGCTGCCATCTTAACTTCCAGGATGAAAACGACATCTTGATTTGTTTAGTCAGCTTTCTGGGCAGCTTGTCTGTGCTACCAGGCAACATCATCGCATGCTTCCTGATGGATAAGATTGGACGAATTAAGATTATAGGTAGCTCCATGCTGGTGTCCTCTGGCTGtactttcttcctcttcctctgcttCAGTCCCGGTGCTGTGATCAGCATCCAGTGTCTGTTCTTCGCAGCGTCTGCAGCCGCCTGGAATGGAATTGAAGTTATAACAGTCGAGCTTTATCCAGCCTCTAAAAGAGCGACTGCTTTTGGTGTGCTGAATGGCCTTTGCAAGTTGGCGGCCATCATTAGCACTTTCATCTTCTCCAAGTTTGTTGGAATCACTAAGATTGTCCCCATCTTACTGTCCTTCTCAGCCCTGGCGTGTGGAGGCCTGCTTGCGTTCAAGCTTCCTGAGACGCGTGAAGTCATTCTGCAGTAAACACCAAAACCAGCTAACAAACGAAATCCAAACTTCAGAAATGTTAAAGCCTCGTAGCAGTGCATGGTCCATCTGGAAACTGGACTTTCTCTCACTGGGACTGGTGGAAAAGTGATTTGATTGTGTAGGTGTTGAATTGATGTTTACCGTAATTAGCttacatgtacactatatggccaaaagtttgtggacacctgaccaccacacctgtatgtggttcttccccaaact

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210390 lncRNA downstream 63218 7707511 ~ 7755018 (-) True G177729
TU210396 lncRNA downstream 67430 7728913 ~ 7750806 (-) True G177733
TU210367 lncRNA downstream 141566 7675916 ~ 7676670 (-) False igf1rb
TU210347 lncRNA downstream 266486 7551522 ~ 7551750 (-) True G177691
TU210337 lncRNA downstream 309048 7508851 ~ 7509188 (-) True G177682
TU210491 lncRNA upstream 81267 7926293 ~ 7927058 (-) True G177807
XR_003403692.2 lncRNA upstream 426081 8271107 ~ 8275360 (-) True LOC113536653
TU210754 lncRNA upstream 478593 8323619 ~ 8324164 (-) True G178057
TU210939 lncRNA upstream 676775 8521801 ~ 8522085 (-) True G178208
TU210961 lncRNA upstream 748160 8593186 ~ 8593405 (-) True G178227
XM_026930903.2 mRNA downstream 7557 7809390 ~ 7810679 (-) True mespba
XM_026930905.2 mRNA downstream 16684 7799665 ~ 7801552 (-) True mespaa
XM_034308693.1 mRNA downstream 53806 7676121 ~ 7764430 (-) False igf1rb
XM_026930589.2 mRNA downstream 53835 7676121 ~ 7764401 (-) True igf1rb
XM_026930277.2 mRNA downstream 148207 7659046 ~ 7670029 (-) False lrrc28
XM_026930256.2 mRNA upstream 146978 7992004 ~ 8124785 (-) True ntrk3b
XM_034308426.1 mRNA upstream 146978 7992004 ~ 8124183 (-) False ntrk3b
XM_026930844.2 mRNA upstream 328235 8173261 ~ 8180651 (-) True mrpl46
XM_026930771.2 mRNA upstream 462253 8307279 ~ 8312494 (-) False LOC113536672
XM_026930770.2 mRNA upstream 462253 8307279 ~ 8312494 (-) True LOC113536672
XR_004579066.1 other downstream 229421 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other downstream 229421 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other downstream 229421 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other downstream 229421 7580434 ~ 7588815 (-) True si:ch1073-365p7.2
TU210154 other downstream 334278 7481449 ~ 7483958 (-) False si:dkey-56d12.4
trnar-acg_4 other upstream 397080 8242106 ~ 8242178 (-) True trnar-acg_4
trnar-acg_5 other upstream 397705 8242731 ~ 8242803 (-) True trnar-acg_5
trnar-ucg_7 other upstream 399623 8244649 ~ 8244721 (-) True trnar-ucg_7
trnar-acg_7 other upstream 401677 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-acg_8 other upstream 402664 8247690 ~ 8247762 (-) True trnar-acg_8

Expression Profile