RNA id: XM_026930652.2


Basic Information

Item Value
RNA id XM_026930652.2
length 1378
RNA type mRNA
GC content 0.53
exon number 5
gene id slc7a6os
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 643819 ~ 647035 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGgctagagaaaaaaagaagaagaagaagaagaagaagagcgccgcctttgttgttgtttgtttgttgttgtttgttgtcgTCACTGCGTCTTTATCCTCCGTTAGCGTCATGGATCCCGGGACCACCATCCTGCGGGTGAAGCGGAAGAGAGGGACGGACCCCGCGGACGCGCTGCTGCTGGCCTGCAAGCGGATCCGAGCCGAGTCCAGCGCCGCGCAGCCCGAACCCGAACCCGAACCCGAGCACGCGCGCATCGAGAACTCCGTGTTCAAGCTCGTGGCCACGGTCGCCTCACAGGACGCCCCGGTGCAGACACACGTGCGTGAAGCTCTGTCACGTCCACGTCTCACACACGCCTTGCGTCCGTCTCACGGCAGCTCCAACAGGATCATCGGAGACTTACGCAACGCCAAATGGAGCACCAGGCGAGAGGAGCGCTACCGGATCCTGTCCAGCCACCGAGCCGGGCTTCCTGCAGAACCTCGCAAAGGACGAGAACCCGAAGAGAACGCTCAGGCGGACACGGAACCTCGTTTGGGAGACGTGCAGGTGTTTGATCTCGTTCAGGAGGACTTCGAGGAGGATGAGAAAGATCCTGAGAAGAATGTGAAGTCTGATCCCGAGGCGATTCTGTGTAACTCGGTGAAGATGATACGCGAGAAGCTGAGCGTGTCGACTCACGGAGCCGGGGCTGAACATCGTGAGAAGGAGGACGACTACGTTTACGATCTGTACTACCAGGAGACGGCCACGCCCGGCTGGATTCAGGACATCTTATCAGTCAGACCTTACACTGAAGAAGGAGAGCTGGTACCTGATGAGGTCGCTTGGGAGGAGGAAGTGTacgaggatgaggatgatgaaaaCGCTGAAAGCAACTGGAGGAACGATTACCCAGACGAGGAAGACAGCAACGACGAGAGTAATGAAGAGCGATACGGAGGGTGTTGGAGCGAGGAGCACTCGTACAGCCGGAGGAGCTGGGAGCGCTATCAGAGGGAGGTGATGGAGGAGTTTGATGAAGATGGGGATGAAGATGCGGACAGAGAAGAATATGATTCTgattgagactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttactcccATGATGATGccgtgttgtgtttgtgtgccagTTGATGCGTATAATCCTgcggatgtttttttttgcgttGTGTTAGTGAGATGCGTGATGTTGCTGTGTTTAGTGGCTGATGTGCATGCTAGTGTgatcagaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtatgtgtaaacattcccaaaaaaaaaaggggcagTGTGATTTCTTGTAAATATGTAGATGTGtacaaacctaaaa

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205723 lncRNA upstream 29842 613465 ~ 613977 (+) True G173769
TU205706 lncRNA upstream 47140 594811 ~ 596679 (+) True G173758
TU205701 lncRNA upstream 50175 592729 ~ 593644 (+) True G173756
TU205702 lncRNA upstream 50175 592841 ~ 593644 (+) False G173756
TU205694 lncRNA upstream 57686 585456 ~ 586133 (+) True G173752
TU205711 lncRNA downstream 40315 687350 ~ 739507 (+) True G173761
TU205761 lncRNA downstream 44261 691296 ~ 771272 (+) True G173805
TU205780 lncRNA downstream 115169 762204 ~ 790257 (+) True G173821
TU205783 lncRNA downstream 117305 764340 ~ 820140 (+) False G173823
TU205782 lncRNA downstream 151018 798053 ~ 820140 (+) True G173823
XM_034308433.1 mRNA upstream 380759 201128 ~ 263060 (+) False tub
XM_034308435.1 mRNA upstream 380759 201128 ~ 263060 (+) False tub
XM_034308437.1 mRNA upstream 380759 201128 ~ 263060 (+) False tub
XM_034308434.1 mRNA upstream 380759 236325 ~ 263060 (+) True tub
XM_034308436.1 mRNA upstream 380759 236325 ~ 263060 (+) False tub
XM_034308878.1 mRNA downstream 98928 745963 ~ 758953 (+) True LOC117598424
XM_034308879.1 mRNA downstream 143339 790374 ~ 822723 (+) True ccdc102a
XM_026930339.2 mRNA downstream 205272 852307 ~ 894448 (+) True dok4
XM_026930340.2 mRNA downstream 205789 852824 ~ 894448 (+) False dok4
XM_034308551.1 mRNA downstream 249112 896147 ~ 908435 (+) True dnaaf1
TU205686 other upstream 73493 568813 ~ 570326 (+) True G173748
TU205778 other downstream 94986 742021 ~ 742710 (+) True G173819
TU205870 other downstream 714747 1361782 ~ 1364931 (+) True G173898
TU206587 other downstream 1411935 2058970 ~ 2060283 (+) True G174536
TU206600 other downstream 1431042 2078077 ~ 2078627 (+) True G174546
TU207714 other downstream 3000335 3647370 ~ 3658276 (+) False btbd10b

Expression Profile