RNA id: XM_026930658.2


Basic Information

Item Value
RNA id XM_026930658.2
length 2733
RNA type mRNA
GC content 0.45
exon number 12
gene id gramd2aa
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5047351 ~ 5074302 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAATCATCTGCGCGCCTGGAGACGCGCTGTGCGCCTTCCGCTTCACTCTCATTCACCTCAGCCTGCCTGGAGGTGCCCTTGACCTGGCTGCGGAACACTCCCGGACTGAGTGGCGGAAGTGCGCGGCTCGTGTCTCCGCTGCTATGTGGACTAGTCCTGCAGTGATGCCTGCGCCGAGAGCGTGACTTCAGCGGAGCAGAGATCCGCCAGGTCCAGGACCATGAGTGACCAAACTGAGGATGTCAGCTTATTAACACCACAGGATGCGTCAGAGCCCCCGAAGGAGGaagacacacacaacactccaAACTTCAGGGTGCATCTGTTTGACGAGCTGTCTTGTGAGGACGTCAAGAAGTGCACCAGAGGCTCGAGCTCCCGGCCGCTGAGAGAGAAAAGTAGGCTGCAGGGAAGCTGTGTGCACGAgctcatctctctccctccgGCCTCATCCTCTTCCCAGACCGTCAGCAAATACAACTCACAGTACCATAAACTCTTCCACAACATCCCCATGGAGGAGAACCTCATGAaggtttattCCTGTGCTCTGCTGCGAGACATCCTGCTACAAGGCCGACTCTACATCTCTCGAAACTGGTTGTGTTTCTATGCAAACCTCTTTGGGAAGGACATTAAGGTGTGCATCCCTGTATTGTCTGTACGGCTGGTAAAGAAACACAAGACAGCGGGCCTCGTCCCCAACGGCCTGGCCATCACCACAGACAGCAGtcaaaagtACGTTTTTGTGTCTCTGCTGTCCAGAGACAGTGTGTATGACGTGCTGAGGCAGATCTGTACACACCTACAGGTCAATGGCAAGAAGAGCCTCAGCTTCAAGCAGTACATGGAGGAGCCGACATCTTTATCTCTGgatgagTTCTCCGTCCCTGATGAGTACCCAGTGGCTGTGGATGAATTCACTCCTGTGCTGAAGTGGAGGAGGAAGCCAACGGTGGCGTCCGTCTCTTCGTCCCTGCCTGATCTACTGGGAAACTCCACCAGCAGCCTGAGTGCCGTAGACACGTCATTTCAGCCCAGCGAGACTCTTCAGGagacaACTCTAGAGTCTGAGAAGATCCTCCTCACAGAGCCTGTACCAGAACTGGGCCAGATGGAGTACCAGCTGCTGAAGTTCTTCATCCTGCTAATTATCCTCCTCATCCTGTCCTCGTGTTACCTGGCGTTTCGTGTGTGTAGTCTGGAACAGCAGCTCTCACTCCTCAGCAGCAAAGCAGCGCTCCCCCTGCAGGAGAGGTAGCTGATGGTGTTGGGACAGCTCTGACCTGAACACGATGCAGGCCGTGTCACTTTTTTATCGAAGTGGAGATGCTGGCCTGTTTTATAATGTGATTTTTGCATAGAGAGACTAAACGAAGACGGCATGCGGCACTGCGGGTTTTTCAGTGCTGCTGGATGGAGGAACAGGTGAACTGCAGGTCATGTAGTGACCACGTCCGTCTGCTGGAACAGGAACGGCTGTTGAAGGAACTACAGCAGAAACATCCTACAGGAATATTGATTGTGCATCCAAGACCTTTAGTTGGCTCTTAATTTCTGGGATCAAGCAACGTTCATGCCTTGACCTCTTCAAGCACACAGTGTGATGGGTGAAGGCAGGTATGAGCTGCTCAGTCAGCCATGTTTCATTGCTCATCGTGATTGCTGTCTAAAGTCATTAAGCAATTTTACAGATGAGAATATAGGAAGAGATAAAGGTCTAAACACAAGTGTTTTAATTATGCAAATATGACTTACACTCTCTAACCCGTTAAACTCCCAGGACCTAATATGTCTATTTCTTCACTTTTGTAATTCTGCACATTTCCGACAGGTTGACTTTAGTTGCTACTGAATAATTCGTAGTCGCTACTGAATAACATGCTTTCGGGAGTTTACTAGGTTAAAAACTGGATGTATTTATTTCCTCAAGCTGTAGCCTATTTCTGTTGCACTCAGGACAGATATTACACTCACCACAGATaaacacaaaagtaaaaatttttttatttatgtattttatagaaGACAATAATGTGAAGCTGGATCACCTGACTAAGTcagtgtattatatatttacaggTTATGCTGGTAGCAAGAAAAATACTTTCTAATGCATCTTCCTTCTGTACTATTTACTGTTGTGCAGGAAATATAACCCCCTTtctatttatatgtttatcagTAATCACGGAACCTGCACATTATGTAAACTGTGAATGCATTTCATATAAATAGGCAGAATATGTTTAAATGACTCACTGAAGCACTACCATGCGGGTATCAGGGCCGAAACTCTGATGGATGTTCTGAACATCTGACACAAAAGAATTTCGAGAGATTAAAGGGGTAACTgtgatgaattattattattattattattattattattattattattaagaactCCAGACAGTGATGTGTAATGATcagggtttttttaaattaaattaatatattttacagattttccaAGTGAAAACTTGGCTCCAGCTTTACCATACCTGCTGCTCACACTAGTGGAAGTTGCTAACCTTCCTGAACATGTAAGgaagaatatatatttatttaccagGAGAAAAGCCATGATCTGTAATTAATTCAGTAGTCAGAGCAGGATTTCACTTCAATACTTAAACCTCACGTTTGTGAACTGAAAAGTAGGAACTAATGCAAAGCAGTGTTtgactgaaatgaaaacattttcattaaaactgatatttttcagaCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208332 lncRNA downstream 200210 4840748 ~ 4847141 (-) True G176029
TU208331 lncRNA downstream 206658 4839988 ~ 4840693 (-) True G176028
TU208311 lncRNA downstream 310935 4732382 ~ 4736416 (-) True G176015
TU208248 lncRNA downstream 414566 4630348 ~ 4632785 (-) True G175967
TU208239 lncRNA downstream 424364 4622128 ~ 4622987 (-) True G175963
TU208726 lncRNA upstream 35812 5110114 ~ 5113268 (-) True G176336
TU208744 lncRNA upstream 230312 5304614 ~ 5407099 (-) True G176354
TU208989 lncRNA upstream 557524 5631826 ~ 5715020 (-) True G176556
TU209305 lncRNA upstream 1008526 6082828 ~ 6167802 (-) True G176817
TU209304 lncRNA upstream 1097896 6172198 ~ 6176354 (-) True G176816
XM_034308991.1 mRNA downstream 14457 4923363 ~ 5032894 (-) False myo9aa
XM_034308996.1 mRNA downstream 14457 4923363 ~ 5032894 (-) False myo9aa
XM_034308995.1 mRNA downstream 14457 4923363 ~ 5032894 (-) False myo9aa
XM_034308992.1 mRNA downstream 14457 4923363 ~ 5032894 (-) False myo9aa
XM_034308998.1 mRNA downstream 14457 4923363 ~ 5032894 (-) False myo9aa
XM_026930779.2 mRNA upstream 7350 5081652 ~ 5133550 (-) True znf609b
XM_034308425.1 mRNA upstream 83559 5157861 ~ 5196817 (-) True trip4
XM_026930897.2 mRNA upstream 124841 5199143 ~ 5220239 (-) True chrna7a
XM_026930601.2 mRNA upstream 155024 5229326 ~ 5302351 (-) True LOC113536575
XM_026930602.2 mRNA upstream 155024 5229326 ~ 5302350 (-) False LOC113536575
XR_003403708.1 other downstream 946925 4100371 ~ 4100426 (-) True LOC113536798
XR_003403707.1 other downstream 947500 4099795 ~ 4099851 (-) True LOC113536797
XR_003403699.1 other downstream 950581 4096714 ~ 4096770 (-) True LOC113536789
XR_003403709.1 other downstream 952089 4095207 ~ 4095262 (-) True LOC113536799
XR_003403701.2 other downstream 994584 4052589 ~ 4052767 (-) True LOC113536791
TU208693 other upstream 5515 5079817 ~ 5080895 (-) True G176307
TU208689 other upstream 65308 5139610 ~ 5190522 (-) False trip4
TU208736 other upstream 117662 5191964 ~ 5196818 (-) False trip4
trnai-uau_1 other upstream 216200 5290502 ~ 5290594 (-) True trnai-uau_1
trnai-uau_2 other upstream 239860 5314162 ~ 5314254 (-) True trnai-uau_2

Expression Profile