RNA id: XM_034308837.1


Basic Information

Item Value
RNA id XM_034308837.1
length 5267
RNA type mRNA
GC content 0.47
exon number 11
gene id shroom2b
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6861351 ~ 6886413 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACACGTAACGTCTAACAGTCGCAGTCCGAGAGTGATTTAGCGTATGTACAGCAGCAGATATTTCAGTGGGCTACTGCATGGTTCAACAGTGTCAAAAAGGACTAGAAGTTGGTTTGGATACTTTCCCACTGGTTCTGTGGATTCGTACTTCACGCTCATTTACGCAGGAGAGAGGAATTTATTTGGACCTTACGGACTCACCATGACGGAGAGGAGTGTGTGGGGATGATGCATGGTGTCTAAGGACCATTTAAATTCAGGGCTATGCGTTTTTCTTCACTGAGCTTTTTAACCAGTCTTAGAGTTGAGTGCTTATTGGTGGTTAGTGGTTAGTGAAGACTGATGTACTGTATGAGGGACACTTCTCAAGATCTTCATTATCTGCCATAAAACGTCATAGTCCCAACAtctgctcagatgtataaacAGCAACACAGCAGCACTTGTCAGGATCTCCTCTGAAGCTGATACTTCTCTCCAAATGCACCATGGAAGTCGTAGGTGCCTGTCCACCGTTTGGAGCTCCAGCAGGAGAGCCCAGGTCTAAGACCATTAAAACAGGGACACATGGAGGTCCATGGAGAAGCACGCTGGATCAGATGGGGAGAAATGGGTGCTGGTGGATGTTGTTCTCATTGGAGGAGCTCCGTGGGGATTTACTCTGAGAGGAGGTCTGGAATACCAAGAACCACTGATTATTACAAAGgtggAGGAGGGAAGCCGAGCGGCGCTGGCCCAGCTCCAGGTCGGTGATGAGATTGTCAGTATTAACACAGTTCCTCTGAGCGGCTACAGACAGGAGGCTATTTGCCTGGTGAAGAGCTCCTTCAAAACTCTGGCATTGGGGTTGAAACGGAAGAATCAGGTCAAACGGAAGAATGAACCTTGCTCATGGCATTCTTCCAAAGTCTCTGAGAATTCCTCAGAAGTTCATGAGACTGAAGATACTGTTGTGCGTGAACCGGCGTGGCAGACAAAGCGTGATGCAGGTTCATCCTCAAATAACTTCATCAGTTGCTGGGGCCAGACAAATCTGCAGCCTGTGTCATGCCAGTTCAGCTCAGTGGGCAACATGGAACTTCTAGAGCGCTCCTGCAACACGCATCACATTGGAGCAGAAAATTTAGCAACCACGAGAAGCGGAGATATACATAACTCTGGATATAGAGCATTTTCTTCTTGCACACCTGAACAGCATTTGTCAGAAAGTGCCGCCTCATCAGAGTGTATGTTTTATCGGGGCAGCCAAAGTGAACACCGCAGGTACCTACAGATTCCTGTGAGTAATGAAGGTTGTACCAGCCCTAAAATCGGGGACCAGGCTGGCTCCAGATTCTTTTCCTCTGGGAGGTTGAATATTAACCCTGTGTGGCATGTCCCAGAGAAGTCTTCAGCAGCTTACTCACCACCCCCACCAGCTCCACCTTTACGCAATGACAGTTTCACAGCAACTAAAGATCATGAAAAGGGATTAGGCATCCCATACTTGCATGGACTGCCAGTACATTCCTATCAGAAGTCCCATAGTAGAGTTAACGACAGGCAGGCTGATGACTACAATTTTAGTGAACAAGGATTCCAGTCACAACATAGCTACAACCCACAATCTGAAAAAGATTTTCTCCGAGTACACCTATCAGCTGAGGACTACTGCCGAAATGAGTTGAATACCACAAAGCTTTATTCCTTATCTAGTACTGATGTAAGACAAGGCCAGAACCACTTGTCTTGTCAGCCTCAGCATCAACGGCAGCGTAGTGATGAGAGTCCCTTCTACCTTTATCCCAGGAACACGTTTGCACCCAATCTGCAGACTGTTGGCATCTATTACCGTAGCCTGCAGCATATTGCTACTAATGGGGGCGTCAAGAAGCAAACTGGAAGTGCCACAGGGTCTCTGTCTAGCACAACTcttgacagcagctctgatggaaTGGCTAATTATCGCTACTATTGCATCACTTCTGATGAGCCCAAACAAGAGATCTCAGATGGAGTTGGAGAGCATAAATGGAGGCCAGAATCAGAGCCTATCCATGCTAGCAGTGACAGGAATCCAGCAAACTATCAAAGAGCCATAAAATTAAAGTACCCTCTAACTTCCCTGCAGGCACCTGAGAACAAaagctacaaacacacagtcagtcCTCCAAAATTAGAAGCTTCAAGTCCAGCAATATTGAAGTCAAACtctgggaaaaaagaaaaggaaaatccATGGAGGAAGGATGGAGGAATTTCTGAGAACCAACACAACAACAGCACAGTGAAGCAACAGGCAGAGCAGAGATCTTTTTCCACCAGAGAACACAAAGATACCCAAAATGACCCTTGGATCTCCAAGAATGGACATAAAATCTGCCCTCAGAAGACCCCATTGTTACATTCTTTAGCCCAGGAGAACAGGATTCTGACTGACAGTACCATGAACACAACAAAAGGATGCACACTGCAAGAAAAACCTGATCCCATAAGTAGCAAGCAAGGAAGACGAAGTGACCGTTATGCCACTACTTTGCTCAATGAGATCCAAGAAAAGAGAGCCCAGCTTCAAAAGAGCCGGAGTGCTGCTACCTTAAATTGTCCTGGAGAATTTGAGGAGGACCTAGGGGTCTGGAGGTCCACAGAGACCTCTACATCCTCTTCAGATGGATCCTTTACAAGCACCTACAAGGACCACCTGAAAGAAGCACAAGCCAGAGTTCTACAGGCCACATCATTTAAAAGGAGAGATCTGGAGCTTCCTGGGAATGAAACATTTCAAGGTCAGTTAGGCACAAAATCAGATTCTACCAATGGCCATGTCTCCCGCATTGGAAGTCGAAAACGTTTCCCCCTGGACAAAAGGGTCCATTCTTTCTCAGAGCCTGACAAGATCAATGAATTAGGTGTAGAAGAAGAGGCCTCAAAACAAGCAACTCTTGGCTCCTTTGTAGATAGATTTAAGTTCTTTGAAGGAGCTTCTAGACCAACATTCTCCAAACCCATCCCAAAGAAATCCCAACCCAATGTCAATGAAAGCATTGAAGATAAAAATAGGTTTACTTTGCTTGTAGGTGAAAATGATAGAAAGTCTGCATCAAACCAGCAGTTCAGTACACACAAATGTAACGCCACAGCTGAAGAACAGCAGCGACTGGGCACCTTTGCAGAGTATGAGGCAACATGGAACTTGCAGAGGAAGTCAGTAGGAGGAAGAACATCCAGTAGATATCACTCTGCAGAGAACATTTTGGATTCAGGGATGGAAGAAGGCAACAGCATGGTGTGCATCCATGAAAGGTCCAGGTCCTCTCCTTCAGCAGACTTTCATGGGGAaAAAATCAGTCTGTCAGCAGAGAAACCTGTGGTAGAGCCTCATCCAGAACACAAATTACACCCGGAGAAAATTCATAGTGACAGTACATCTGAAAGGGGTCAGAATCATCTCAACATTTCTGACCCTCTGGAGTTCAGCAGAAGCAGTGATCTGGAACAGAGAGACATGACACAGCCTCTCTACTCCACCCACACCACAAAAGGATCTTGCCCAGCATCTTCACACCCTCATCATCTCCGTTTTCAAGCCTCAGTATTTGAACTTTCATCCAGCAATAAAGGCAGTGCAGAACAAAAGCCTAGTGACTACAGTGAGAATGAATCTACACAGCTAGAAACCACATCCTCATCCTCTCTGAGTGACTCCCAGCAGGAAGACCCACATGCTGCTACAATACCACAGAGGGACCGGATGTGGAATAATGGCAAACCACTCTCTGCTTTGGTGCCTTCGGCAACACCCAAATTCCCTCTCCCTCAGTCCGGTGGTGAAGTTACTGCACCCTCAGAATTTGGGTATTCACAAGGGTCTTCAATTTCACTCCGGAAGCTTACTGATGAACTCCCTGCCAGCATTCAGTATTCAGATATTCACAGTAACTTGATGGAGAGCTCAACAGAGCCCAGCTCTGCCATGAAAAACATTCCCATGAGAATTGTCCATGCAGAAGGCAGCTCTAATACAGAAAATAAGCAAGAGTCACCTGGAGATACTGATAAAGGGTTTACCCACCAGCTAAACCTACCATGCTCCCCAGAGCAGCCTCTTTCCCTTTTTCATGCCATGCAGTTCAGTTCTTCAGAGGACCAGAAGATGGACAACACAGAGACAATGAGGCTGAGAGCAGATCCCACTGGCCTCTCTGAGGAGgatgagaagagagaagaacTAGCCAGAGACATCATGGGAATGGATAAGAGTCTGGTAGACATTTTGGATCAGAGTAAGATGAAGACCACTATGGACCTGATGGAAGGGATCTACCCTCAAGGAGAGCAGCTTTTAGAGGGGCTACAGCAAAGGAGAAAGTCGGTTTCAAAGCAGTCTCCCAAAACCACACAGGAGAAGGCCGATGACAAAATGGCTGCCTCAGCCTCACTAGCGACGAGCTCTTCATACTACAGCACATCAGCTCCCAAAGCTGAGCTCCTCATTAAGATGAAGGACATGCAAGAACAGATGAGGGAACAGGGCTCTGAAGATGAACTTGAATATGATCTGTCCAATAAGAAGGAGCTGATTGACAGTCTGAGCAGGAAGCTGCAGGTACTACGTGAGGCCAGAGAGAGTCTTCTGGAGGACATGCAGGACAACAACAATCTGGGTGAAGAGGTGGAGGCCACCGTGCAGGCCATTTGCAAGCCCAATGAGCTGGACAAGTTCCGCATGTTTGTTGGAGACCTGGACAAAGTGGTCAGTCTGCTGCTCTCACTGTCGGGGAGACTGGCACGTGTGGAAAATGCACTCAATAACCTGGAGGAGGGTGTTTCAGCTGAAGAGAAGCACACGCTAACAGAAAAACGGAAGCTGCTGATTCGCCAGCATGAAGACGCCAAGGAGCTGAAGGAGAACCTGGACCGAAGGGAGCGCCTGGTCTACGAAATCCTGGTCAGCTACCTGAGTGAAGACCGCCTCGCTGACTACCAGCACTTTGTGAAGATGAAGTCGGCCCTCATCATTGAGCAGAGAAAGCTTGAGGACCGGATTAAACTCGGAGAGGAACAGCTCAAGTGTCTGAAGGACAGCCTGCCTCTAGAGCAGAGACTGGGCTACTGAACTTAATTTAAACTGAGAGGTGGCAGATTGGCATCTTCAGCACTGTGGCACGTTGACTTTTCTGTTATTATACAAGTAGTTTGTGAGGAAGTTACTCAGTGAATGGATATTCTATAAAATGAATTCAATCTGGCAGATTAAGCTGTGTTGttaattggctttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209925 lncRNA downstream 1862 6858539 ~ 6859489 (-) False LOC113536608
TU209633 lncRNA downstream 122743 6738321 ~ 6738608 (-) True G177097
XR_004579067.1 lncRNA downstream 272055 6579004 ~ 6589296 (-) False LOC117598400
XR_004579068.1 lncRNA downstream 272055 6580360 ~ 6589296 (-) True LOC117598400
TU209513 lncRNA downstream 309769 6551325 ~ 6551582 (-) True G176991
TU209973 lncRNA upstream 172119 7058532 ~ 7059550 (-) True G177374
TU210004 lncRNA upstream 251216 7137629 ~ 7138904 (-) True G177404
XR_004579109.1 lncRNA upstream 269815 7156228 ~ 7157621 (-) True LOC117598441
TU210062 lncRNA upstream 381148 7267561 ~ 7271271 (-) True G177448
TU210074 lncRNA upstream 403472 7289885 ~ 7290092 (-) True G177455
XM_026930663.2 mRNA downstream 3 6856755 ~ 6861348 (-) True LOC113536608
XM_026930606.2 mRNA downstream 16106 6831248 ~ 6845245 (-) True clcn4
XM_034308534.1 mRNA downstream 44638 6809823 ~ 6816713 (-) True LOC113536768
XM_026930731.2 mRNA downstream 54321 6794539 ~ 6807030 (-) True swap70a
XM_026930337.2 mRNA downstream 210216 6648748 ~ 6651135 (-) True adma
XM_026930266.2 mRNA upstream 13835 6900248 ~ 6913318 (-) False mfn1b
XM_026930265.2 mRNA upstream 13835 6900248 ~ 6913318 (-) True mfn1b
XM_034308480.1 mRNA upstream 13835 6900248 ~ 6913305 (-) False mfn1b
XM_026930692.2 mRNA upstream 54355 6940768 ~ 6954744 (-) True si:ch73-100l22.3
XM_026930342.2 mRNA upstream 75223 6961636 ~ 6979476 (-) False mafgb
TU209010 other downstream 1153086 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 1153086 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 1547097 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 1570757 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 1664533 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 595036 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 694021 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 694021 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 694021 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 694021 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile