RNA id: XM_034308829.1


Basic Information

Item Value
RNA id XM_034308829.1
length 2799
RNA type mRNA
GC content 0.53
exon number 26
gene id eps15l1a
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12804314 ~ 12837848 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATACGGATGGGGAAACATAATGCCGCACTCACCCCGCCGTTCCCGGAGCAACAGGGAAAATGGCAGCCCTCACCACCCTCACTCAGctgTCGAGTGGGAACCCAGTGTATGAAAATTTTTACAGACAGGTGGATCCAGGAAACACAGGGAGGGTCGGACCTACAGAGGCTGCTTTGTTTCTGAAGAAGTCAGGCCTGCCGGATATCACTCTGGGAAAGATCTGGGACCTCGCTGATCCAGATGGAAAAGGTTTCCTGGACAAGCAGGGATTTTATGTCGCTTTGCGGCTCGTGGCCTGCGCACAGAGCGGTCAGGATGTCTCTCTTGCAAGTTTAAACCTCACTGTCCCTCCTCCTAAATTTAAGGATCCTAGTAGCCCGTCATTAAGTGGTGCTTCATCAATGGACAGCCACTGGGCCGTTAGACCTGAAGAGAAAAGCAAGTTTGATGGTATTTTTGACAGTCTTGTGCCAGTAAACGGGTTACTCTCCGGAGAAAAGGTCAAGCCAGTTCTTATGAACTCAAAGCTGCCAGTGGATGTGCTAGGAAAgGTTTGGGATTTGAGTGATATAGATAAAGATGGGCATCTGGACAAGGACGAGTTTGCAGTGGCCATGCACCTGGTGTACCGCGCCCTGGAGAAGGAGCCTGTTCCCTCTGTTCTGCCCTCCtccctcatccctccatccaaaCGCAAGAAGTCTGTGGGCTCCTTATCCAGCATGGCACCTGTGATGCCAGGAAGCCCACCTCCTCCTAAAGACAGCCTGCGATCCACACCATCACACGGCAGCATGAACTCCCTGAACAGCGCCGGGAGTCTGtcacctaaacacacactcaaatccacacagCACTCTGTGAACTGGGTGGTGCCAGCGGCAGACAGAGGACGCTACGATGACATCTTCCTCAAAACGGATGCCGACCTTGACGGCTTTGTCAGTGGCCAAGAAGTGAAAGAGATCTTCATGCAGTCTGGCCTTCCGCAGAACATTCTGGCACATATATGGGCTTTGTCAGACACACGGCAGATTGGCAAGCTGACCCGAGAGCAGTTTGCTCTGGCCATGTACTTCATTCAGCAGAAAGTGAGCAAAGGAGTGGATCCTCCTCAGGCTCTGACCCCGGACATGATCCCTCCGTCTGAGAGAGGAACCCCCaatATGTCAGGGTACATGACGCCCGTGGGATCAGAAATGGTAGCCCTGACCGAAATGCGCAGAGACAGCTCCAGCTCTGTGGGGTCTGGTGAATTTACAGGAATCAAAGAGCTGGATGATCTGAGTCAGGAGATTGCTCAGCTGCAGAGGGAGAAATACACACTGGAGCAAGACATCAGGGAGGCAGAGGAAGCCATCAGACACAAAACTACTGAGGTTCAGGAAATGCAGAATGATCTGGACCGAGAGACGTGCAGTCTGCAGGAGCTGGAGGCCCAGAAGCAGGACGCTCAGGACCGACTGGATGAGATGGACCAGCAGAAGGCCAAGCTGGAGGACATGCTCAATGAAGTACGACAGAAGTGCCAAGAGGAGTCCCAAATGatctCGTCACTCCAGAGTCAGATCCATTCTCAGGAGTCGGACCTGCTGAACCAGGAGGAGGAGCTGAGTCGGGCTAAAGCGGACCTGAACCGGCTACAGCAGGAGGAGAGCCAGCTGGAGCAGAGCCTGCAGGCCGGCAAGATCCAGCTCGAGACCATCATCAAGTCCCTGAAGGCCACGCAGGACGAGATCAACCAGGCTCGCAGCAAGCTCTCTCAGATCCAGGACAATCAGCATGAGATAAGTAAAAGCATTGAGCAGTACAGCAGCGCTCTGAACGGCACACATGGAGGCAGCATGACTAACCTGGCCGACATGAGCGAGGGGTTCCCCGACAAGGAGAACGGGGGCTTCGGGGTCATGgacgACCCGTTTAAAGTGAAGACGAATGTGTTCAGCACAAACTCTCAGGAGATGCACACTGACCCTTTTCAGTCGGAAGACCCTTTCAAATCCGACCCTTTTAAAGGTGATCCCTTCCAGAATGATCCTTTTGCCAAGCAGCCTCCCACAGCAACAGATCCATTCGGCGGAGATCCGTTTAAAGAGACAGACCCGTTCAAGACCACTTCAGAAGACTTCTTTAAGAGGCCGGCCAAGGCTGATCCCTTCACCAGCTCGGACCCTTTCAGTAAAAGTGCTACTCTTCCAGTAAAGTCTCATCACTTCTCAAGCAGCGACCCCTTCGCTTCCACCAGCCCCAAACACAAAGGCTCAGACCCCTTTGGGACTCTGGACCCTTTTGGAAGCAGCTCTTTTGGCAGCAACAGTGGCTTTGCTGATTTCAGTCAGATGTCAAAGCAGAGCTTCACCGACGACCCCTTCAACCAAAACCAGGACACTCCAGCTCTCCCGCCCAAGAAGACCATACCGCCTCGGCCCAAGCCTCCCAGCGGTAAAAGCACTCCAACTAACCTATCCGGATCTGTGGATTCAGCCAAGTCGAGCGATCCCTTCCAGCCCTTCGGCTCTGATGCCAACGACCCGTTTCAGAGTAAAAAGGGGCTCGGGGACCCGTTTAGTGGCAAAGATCCGTTTGCTCCATCTGCTTCAAGTAAAGCCACTAAAGATTCTTCCTTGGGTTTTGCAGACTTCAGCTCTGGAGTGGGAAAGTGAAGGTAAGATCATCTGAAAATTTGTTTGGGAATGAGGCGCAGCAGATGGAGTGGGCCAAGCGCGAGAGCGAGCGAGCTGAGCGTGAGAGGTTGAAGAGACTCaggcagcaggagcaggaggacCTGGAACTAGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213315 lncRNA upstream 121751 12654422 ~ 12682563 (+) True G180268
TU213314 lncRNA upstream 150099 12653796 ~ 12654215 (+) True G180267
TU213271 lncRNA upstream 242533 12543667 ~ 12561781 (+) True cdc14ab
TU213262 lncRNA upstream 306663 12496731 ~ 12497651 (+) True G180246
TU213255 lncRNA upstream 317570 12486506 ~ 12486744 (+) True G180242
TU213678 lncRNA downstream 13937 12850960 ~ 12851179 (+) True G180534
TU213871 lncRNA downstream 299114 13136137 ~ 13203148 (+) True G180695
TU213916 lncRNA downstream 364848 13201871 ~ 13285070 (+) True G180738
TU213946 lncRNA downstream 399454 13236477 ~ 13239583 (+) False aqp12
TU214029 lncRNA downstream 462257 13299280 ~ 13302297 (+) True G180833
XM_026930647.2 mRNA upstream 71622 12722857 ~ 12732692 (+) True zbtb37
XM_026930649.2 mRNA upstream 71622 12722857 ~ 12732692 (+) False zbtb37
XM_026930823.2 mRNA upstream 83885 12716584 ~ 12720429 (+) True s1pr1
XM_034308640.1 mRNA upstream 138304 12645186 ~ 12666010 (+) True slc30a7
XM_034308472.1 mRNA upstream 180366 12615075 ~ 12623948 (+) True vcam1b
XM_026930880.2 mRNA downstream 110017 12947040 ~ 12948807 (+) True mrpl54
XM_026930877.2 mRNA downstream 113375 12950398 ~ 12974799 (+) True malt2
XM_026930878.2 mRNA downstream 120393 12957416 ~ 12974799 (+) False malt2
XM_026930491.2 mRNA downstream 139495 12976518 ~ 12990417 (+) True safb
XM_026930798.2 mRNA downstream 155241 12992264 ~ 13024225 (+) True si:ch1073-396h14.1
TU213294 other upstream 202250 12573193 ~ 12602064 (+) False LOC117598398
trnag-ucc_15 other upstream 416073 12388170 ~ 12388241 (+) True trnag-ucc_15
TU213163 other upstream 470683 12328066 ~ 12333631 (+) False timm13
TU213106 other upstream 748565 12054958 ~ 12055749 (+) True G180121
TU212683 other upstream 1374975 11428613 ~ 11429339 (+) False G179758
TU213850 other downstream 259350 13096373 ~ 13098156 (+) False ankmy1
trnag-gcc_9 other downstream 413347 13250370 ~ 13250441 (+) True trnag-gcc_9
trnag-gcc_10 other downstream 419034 13256057 ~ 13256124 (+) True trnag-gcc_10
trnag-gcc_11 other downstream 420985 13258008 ~ 13258076 (+) True trnag-gcc_11
trnag-gcc_12 other downstream 426801 13263824 ~ 13263894 (+) True trnag-gcc_12

Expression Profile