RNA id: XM_026930675.2


Basic Information

Item Value
RNA id XM_026930675.2
length 1648
RNA type mRNA
GC content 0.45
exon number 11
gene id rfc4
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5763807 ~ 5772916 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAATGACGTTAGACGTGTCGTCATCAATTGTGCGCCTGGCGGGAATCTGGCGCTCTTTGCTTTTGGTGTTGTTTTCAGTTTAAACCCTTCATAAAATTTGGTCTTGTAGGAGAAAACATGCAGGCTTTTCTGAAAGGAGCTACACAAGGTGTTAAACCTCAGAAGGACAAAGCCACAGCTTCAGGCAGTGGAGAGAATAAGCGACAGAAGCCAGTGCCTTGGGTGGAGAAATACAGACCTAAGTGCGTGGATGAAGTTGCTTTTCAAGAGGAGGTCGTTGCAGTATTGAAGAAATCACTAGAGGGTGCTGATCTCCCAAATCTTCTGTTTTATGGCCCACCTGGAACAGGAAAGACCTCCACTATTCTTGCTGCTGCCAGGGAGCTTTATGGACCAGAGCTTTACCGACAGAGAGTGCTGGAACTGAATGCCTCAGATGAGAGAGGGATTCAGGTGATTCGGGAGAAAGTGAAGAATTTTGCTCAGCTAACGGTGGCTGGTACGCGGCCGGATGGAAAATCATGTCCTccatttaaaatcataattcTGGACGAGGCGGATTCCATGACCAATGCGGCCCAGGCCGCTCTGAGGCGCACCATGGAGAAGGAGTCACGCACAACCCGCTTCTGCCTCATCTGTAACTACGTCAGCAGAATCATCGAGCCTTTGACGTCTCGCTGCTCCAAATTCCGCTTCAAACCCCTCGCCAATGAGGTTCAGCGGGAGCGTCTGGTGGAAATCTGTGAGAAGGAGAATCTCAAATACAGCAAAGAGGGGATTGATGCGCTGGTCAAAGTGTCAGAGGGAGATCTCCGGAAAGCTATAACGCTTCTGCAGAGCACAGCCAGACTCAgtacagagaaagagatcacAGAGAGCATCGTCGTAGAGATCTCAGGGGTGGTTCCACCCAAAGTGATTGAAAATCTGCTTCAAACCTGTTACAAAGGCAACTTTGAAAAATTAGAGATTGCTGTGAAGAATATGATAGATGAAGGCTACGCTGCTACACAGATCCTCAGCCAGTTCCATGACGTTATTATAGAGGAGAAACTGGGTGATAAACAGAAGTCTGTCATCACTGAAAAGATGGCAGTTGTTGATAAGTGCTTGGCGGACGGAGCTGATGAATACTTGCAGCTGCTGAACCTCTGCTCTGTGATCATGCAGCAGGCCACGCAGAGCGCCTGAGCTCACCACAGACCTTCAACACGTGCTCTCTATCTCACataaattagatttattttgtacattaaaaaattgtaattaaaaatgttttcttacaCTTCCTTTGCTTGTTGCATCTCTGGCAAATAAATGTTAGATGCAGCAGGAGCTAACTTGTGACATAAAAGTAGTTCTCTAAAAGACATGAAATGCATTCAAAGGCACATTTGCAAAATTTTTATTTCCAAGTGAAATGGGAAAATTTCTTGTGTGTGCATCTGGGAACAGGGTTAGTTACTGAGGCCGGTCGAGGCTGAGGCCAATTTTTGTGCTCGCCTACATGAACTGTGTCTTTGCtgagtattttctttttttttgtcttgtcccaCTCATGATGCACAGTGACAgtcaaaatgtgtgaaacagtCGCTGCAATTTACTGGAAGATTACAGACAAATAAATTTTATGATTGCCTAA

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208878 lncRNA upstream 72947 5677206 ~ 5690860 (+) True G176469
TU208838 lncRNA upstream 149479 5602656 ~ 5614328 (+) True G176430
TU208802 lncRNA upstream 195707 5471812 ~ 5568100 (+) True G176401
TU208808 lncRNA upstream 253953 5505770 ~ 5509854 (+) True G176406
TU208784 lncRNA upstream 339712 5420887 ~ 5424095 (+) True G176384
TU209042 lncRNA downstream 41679 5814595 ~ 5815106 (+) True G176596
TU209054 lncRNA downstream 82609 5855525 ~ 5857242 (+) True G176608
TU209160 lncRNA downstream 178898 5951814 ~ 5952155 (+) True G176700
TU209210 lncRNA downstream 298031 6070947 ~ 6075427 (+) True G176746
XR_004579052.1 lncRNA downstream 321287 6094203 ~ 6100027 (+) True LOC117598391
XM_026930579.2 mRNA upstream 53466 5708389 ~ 5710341 (+) True gemin6
XM_034308888.1 mRNA upstream 201080 5549431 ~ 5562727 (+) True LOC117598428
XM_026930917.2 mRNA upstream 239377 5522248 ~ 5524430 (+) True LOC113536777
XM_026930286.2 mRNA upstream 267354 5489015 ~ 5496453 (+) True sult5a1
XM_026930821.2 mRNA upstream 356360 5399124 ~ 5407447 (+) True csnk2a2a
XM_026930669.2 mRNA downstream 15531 5788447 ~ 5828396 (+) True ankrd13c
XM_034308805.1 mRNA downstream 15537 5788453 ~ 5827313 (+) False ankrd13c
XM_026930348.2 mRNA downstream 72543 5845459 ~ 5853826 (+) True sirt7
XM_034308464.1 mRNA downstream 88514 5861430 ~ 5865960 (+) False zgc:194981
XM_034308465.1 mRNA downstream 88681 5861597 ~ 5865960 (+) True zgc:194981
TU208265 other upstream 1102671 4656605 ~ 4661136 (+) True G175977
XR_004579071.1 other upstream 1466560 4281244 ~ 4297247 (+) False nadsyn1
TU207714 other upstream 2105531 3647370 ~ 3658276 (+) False btbd10b
TU206600 other upstream 3685180 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 3703524 2058970 ~ 2060283 (+) True G174536
XR_003403680.2 other downstream 1349469 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 1494968 7267884 ~ 7271320 (+) False rpl37a
trnae-cuc_24 other downstream 1829310 7602226 ~ 7602297 (+) True trnae-cuc_24
trnar-ucg_6 other downstream 2470506 8243422 ~ 8243494 (+) False trnar-ucg_6
trnar-acg_6 other downstream 2472036 8244952 ~ 8245024 (+) True trnar-acg_6

Expression Profile