RNA id: XM_026930678.2


Basic Information

Item Value
RNA id XM_026930678.2
length 3452
RNA type mRNA
GC content 0.52
exon number 20
gene id efl1
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10114083 ~ 10251340 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCTTGTCATATGTTTTAGCTGCTTTACAGACTGCTCTAGTCTTTGTAGCTTTAATTAGAGGTGTTTGTATGCTCCACTTTCAGTAACTGTGCATGTGTAGCGTGTTAACTGTAGCGGAAGatttttgTCAAAATGGGGCACACGAGTTTAGAAAAAATCATTGCACTACAGAAgaaaacatcaaacattagaaataTCTGTATTTTGGCCCATGTGGATCATGGGAAAACGACACTGGCAGATTGTTTGGTTGCAAGCAATGGCATCATTTCCACTCGCTTGGCAGGGAAGCTCAGGTACCTGGACAGCCGGGAGGATGAACAGATCCGGGGGATCACTATGAAGTCCAGTGCCATTTCATTACACTATACAGCAGgagagagagaataccTGATTAATCTGATCGACTCTCCCGGTCATGTGGATTTCTCTTCCGAGGTGTCTACGGCTGTACGGCTGTGTGATGGAGCCATTGTCATCGTGGACGCAGTAGAAGGAGTGTGTCCTCAGACACAAGCGGTGTTGCGCCAGGCATGGCTGGAGAACATTCGACCTGTGCTTGTTATCAACAAGATCGACCGGCTAATCATGGAGCTCAAGCTTAGTCCTCAAGAGTCCTACACGCACCTCCAGAAAATTCTTGAACAAgtgAATGCTGTGACAGGCACTCTGTTCACTTCTAAAGTGCTGGAGGAGCGGGCAGTGAAGCAGGCACAGGTTGAGGAAGAGCGTCCTGAGGCCGATGGAGGAGAGCAGGTTTATGACTGGAGCTCAGGCCTGGAGGAAACGGACGACTCACATCTATATTTCAGCCCTGACCAGGGCAACGTGGTGTTTGCCAGTGCAATCGACTCCTGGGGCTTCagCGTCCGTCAGTTTGCACAGATCTACAGCCAGAAGATGGGGATTCGCTTAGAGCTTTTACAGAAGACCCTGTGGGGGGATTTCTACCTGAACGCCAAGGCCAAAAAGATCATGAAGGGAGCGCAGTCTAAAGGAAAAAAGCCGCTTTTTGTCCAGCTGGTCCTGGACAATATCTGGAGTTTATATGATGCCGTGGTCATCAGAAGAGACAAAGAGAAGGTGGAGAAGATGGTGACCTCATTAGGGTTAAAGGTCATGGCCCGTGACCTTCGTCACTCTGACCCGAAAGTGCTCCTGAGTGCCATGTGCAGTCAGTGGTTGCCTCTGTCTCAGGCGGTGCTCTCGATGGTGTGTGAGAAGTTGCCGGCTCCCACTGAGGTGAGCTCTGAGAGGGTGGAGAAGCTGATGAGCGTGGGCACACGCAGGTTCGACTCCCTGCctgaaaaaacacagcagctgaAAAAAGCTTTCTTGGAGTGTGCAAGTGAAGAATCAGCTCCAGTCATCGTGTTCGTGTCGAAGATGTTCGCTGTGGACTCAAAGGTCCTACCGCAGAACAAACAGAGGCCCCTGACTCAAGAGGAGATCGCTCAGCGTAGAGAGCTGGCCAGACAGAGACACGCAGAGAGACAAGCGGCCAGTCAGGGCCCTGAAAACCCAGAGGCAACCAACACCACCAACCCAGGTACTGATGGCCTGTGCGTGCAGACAGAAGCCCTGACGGTGAGGTCCACaacagaagaagaggagaaagagtaCTTTGTAGCCTTTGCACGTGTCTACAGTGGAGTAGTGCGCAGGGGTCAGAGAGTGTTTGTGCTCGGACCCAAGTACGACCCTGCCATCACTCTGCAGACGCTGACAGATGAGTGTTCAGTCCCTGACTCCATGCCCGCCATACCCCACATGGCCTGCTGCACTCTGGATCGGTTGTATTTGCTGATGGGACGAGAGCTGGAGGAACTCGATGAGGTTCCAGCAGGCAACGTTCTGGGAATCGGTGGGATGGAGGAGTTTATTCTAAAGTCAGCCACCATCTCGACCTCGGCTGCGTGCCCCCCCTTCACACCACTCAACTTCGAGGCCACGCCCATCGTCAGAGTGGCGATTGAACCCAAACATCCCAgcgAGATGCCCAAGCTGGTGCGTGGGATGCGTCTCCTGAACCAGGCTGACCCATGTGTGGAGGTTTTGATTCAGGAGAGTGGAGAGCATGTACTCGTCACAGCAGGAGAGGTTCACCTGCAGCGCTGCCTCGATGACCTCCGagagagGTTTGCCAAAATTGAGATCAGTGCCTCTGCTCCCATCATCCCATTCCGTGAGACTGTGATCCGCCCACCCAAAGTGGACATGGTGAACGAGGAGCTTGGGCGCCAGCAGAAGGTGGCAGTGATCCATCAAACCAAAGACGAACAAACCAAACTCCCAGAAGGGGTTCAGATAGATTCAAGCGGCCTGGTGACCCTCACCACCCCCAACAAAATGGCCACAATTGGAGTTCGGGCCATTCCTCTACCTGAGGAAGTGACCAGGCTGCTGGAGGAGAACGCAGAGCTTATCCGAACCATGGAGCACTTCAACCTGCAGGCACGAGAAGGCAAAGCTTTAGAGATTAGTTCAAAAACTCTGGAGGAAATACGTGACTTAAAGAATGAATTAGAAAAGCACCTTCAGGGCCGCAAGTGGAGGAATGCAGTGGATCGAATCTGGGCTTTTGGACCACGTCGCTACGGCCCTAACATTCTTCTAAACAGTGTTGAGGGATACCAAAGATCATCGGTGTGGCAGTTTCTCAATTtagagaaggagaaaagtgAAGGCACCATGCTGCGAGACTTCGATAACAGCATCGGTAGTGGGTTCCAGCTGGCCACACTTTCAGGCCCCATGTGTGAGGAGCCGCTGATGGGCGTCTGCTTCTCTGTGGAGAGCTGGGACATGAAAATCCCATCTCAGACAGTGCAGAAGGACTCACAGGATGACTCTATTTCTCAGCAGAGTTTGGAggcaaataataatgaatgtgaGCTTGGAGAAGACAGTGAGGCACAGAGCAGGCGTCGAGACATGGCCGACTGCTACGGGCCATTTTCTGGTCAGCTCATTGCTTCAATGAAAGAGGCATGCAGGTACGCCTTCCAGGCAAAACCACAGCGCCTCATGGCTGCCATGTACACCTGTGAGATCATGGCTACAGCTGAGGTCTTAGGGCGTGTGTACGGTGTCCTCTCCAAGCGTGAAGGACGTGTCCTCAATGAGGAGATGAAGGAGGGATCAGACGTGTTCATCATCAGAGCCGTACTGCCGGTGGCAGAGAGCTTCGGATTCGCTGATGAGATCCGCAAGAGGACGAGCGGCCTGGCAAGCCCTCAACTGGTGTTCACTCACTGGgagGTCATCTCCAGCGATCCGTTCTGGGTGCCCACTACTGAAGAAGAATATCTCCACTTTGGAGAAAAGGCAGATTCAGCTAATCAGGCACTGAAGTACATGAATGCCGTTCGGAGACGCAAAGGGCTTTACGTGGAGGAGAAGATCGTCGAACATGCTGAGAAACAACGGACTCTCAGCAAGAACAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212223 lncRNA downstream 2371 10112028 ~ 10112242 (-) True G179372
TU211840 lncRNA downstream 340204 9770818 ~ 9774409 (-) True G179021
TU211823 lncRNA downstream 360234 9739531 ~ 9754379 (-) True G179004
TU211776 lncRNA downstream 487430 9625284 ~ 9627183 (-) True G178961
TU211728 lncRNA downstream 670686 9440919 ~ 9443927 (-) True G178914
TU212321 lncRNA upstream 235648 10486865 ~ 10487943 (-) False sh3gl3a
TU212324 lncRNA upstream 260404 10511621 ~ 10512024 (-) True G179466
TU212327 lncRNA upstream 263479 10514696 ~ 10515201 (-) True G179469
TU212342 lncRNA upstream 310186 10561403 ~ 10563452 (-) True G179478
TU212349 lncRNA upstream 323319 10574536 ~ 10576032 (-) True G179485
XM_026930847.2 mRNA downstream 41303 10068517 ~ 10073310 (-) True mex3b
XM_026930381.2 mRNA downstream 249828 9837999 ~ 9864785 (-) False LOC113536465
XM_026930622.2 mRNA upstream 7090 10258307 ~ 10452771 (-) True adamtsl3
XM_026930623.2 mRNA upstream 7090 10258307 ~ 10330765 (-) False adamtsl3
XM_026930624.2 mRNA upstream 59547 10310764 ~ 10452763 (-) False adamtsl3
XM_026930581.2 mRNA upstream 235518 10486735 ~ 10523579 (-) True sh3gl3a
XM_034308760.1 mRNA upstream 240281 10491498 ~ 10523579 (-) False sh3gl3a
TU211855 other downstream 299388 9813892 ~ 9815225 (-) True G179035
TU211757 other downstream 591283 9522416 ~ 9523330 (-) True G178942
trnae-uuc_3 other downstream 1223915 8890627 ~ 8890698 (-) True trnae-uuc_3
trnar-acg_8 other downstream 1866851 8247690 ~ 8247762 (-) True trnar-acg_8
trnar-acg_7 other downstream 1867838 8246703 ~ 8246775 (-) True trnar-acg_7
TU212647 other upstream 992758 11243975 ~ 11246305 (-) False nppc
TU212749 other upstream 1157875 11409092 ~ 11415440 (-) False G179803
TU212758 other upstream 1244857 11496074 ~ 11503962 (-) False LOC117598430
TU213621 other upstream 2466144 12717361 ~ 12720476 (-) True G180485
trnam-cau_27 other upstream 2985186 13236403 ~ 13236475 (-) True trnam-cau_27

Expression Profile