RNA id: XM_034308813.1


Basic Information

Item Value
RNA id XM_034308813.1
length 3967
RNA type mRNA
GC content 0.50
exon number 20
gene id efl1
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10114083 ~ 10251340 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cAAGACAGGCAACATTCCAACATCATAAGACACAACTGGACTCATAAACGGAAATGCTAATCAGGACTGCACTAACACTAAATATTTCAACAGAGAAGAACATAAGGatttttgTCAAAATGGGGCACACGAGTTTAGAAAAAATCATTGCACTACAGAAgaaaacatcaaacattagaaataTCTGTATTTTGGCCCATGTGGATCATGGGAAAACGACACTGGCAGATTGTTTGGTTGCAAGCAATGGCATCATTTCCACTCGCTTGGCAGGGAAGCTCAGGTACCTGGACAGCCGGGAGGATGAACAGATCCGGGGGATCACTATGAAGTCCAGTGCCATTTCATTACACTATACAGCAGgagagagagaataccTGATTAATCTGATCGACTCTCCCGGTCATGTGGATTTCTCTTCCGAGGTGTCTACGGCTGTACGGCTGTGTGATGGAGCCATTGTCATCGTGGACGCAGTAGAAGGAGTGTGTCCTCAGACACAAGCGGTGTTGCGCCAGGCATGGCTGGAGAACATTCGACCTGTGCTTGTTATCAACAAGATCGACCGGCTAATCATGGAGCTCAAGCTTAGTCCTCAAGAGTCCTACACGCACCTCCAGAAAATTCTTGAACAAgtgAATGCTGTGACAGGCACTCTGTTCACTTCTAAAGTGCTGGAGGAGCGGGCAGTGAAGCAGGCACAGGTTGAGGAAGAGCGTCCTGAGGCCGATGGAGGAGAGCAGGTTTATGACTGGAGCTCAGGCCTGGAGGAAACGGACGACTCACATCTATATTTCAGCCCTGACCAGGGCAACGTGGTGTTTGCCAGTGCAATCGACTCCTGGGGCTTCagCGTCCGTCAGTTTGCACAGATCTACAGCCAGAAGATGGGGATTCGCTTAGAGCTTTTACAGAAGACCCTGTGGGGGGATTTCTACCTGAACGCCAAGGCCAAAAAGATCATGAAGGGAGCGCAGTCTAAAGGAAAAAAGCCGCTTTTTGTCCAGCTGGTCCTGGACAATATCTGGAGTTTATATGATGCCGTGGTCATCAGAAGAGACAAAGAGAAGGTGGAGAAGATGGTGACCTCATTAGGGTTAAAGGTCATGGCCCGTGACCTTCGTCACTCTGACCCGAAAGTGCTCCTGAGTGCCATGTGCAGTCAGTGGTTGCCTCTGTCTCAGGCGGTGCTCTCGATGGTGTGTGAGAAGTTGCCGGCTCCCACTGAGGTGAGCTCTGAGAGGGTGGAGAAGCTGATGAGCGTGGGCACACGCAGGTTCGACTCCCTGCctgaaaaaacacagcagctgaAAAAAGCTTTCTTGGAGTGTGCAAGTGAAGAATCAGCTCCAGTCATCGTGTTCGTGTCGAAGATGTTCGCTGTGGACTCAAAGGTCCTACCGCAGAACAAACAGAGGCCCCTGACTCAAGAGGAGATCGCTCAGCGTAGAGAGCTGGCCAGACAGAGACACGCAGAGAGACAAGCGGCCAGTCAGGGCCCTGAAAACCCAGAGGCAACCAACACCACCAACCCAGGTACTGATGGCCTGTGCGTGCAGACAGAAGCCCTGACGGTGAGGTCCACaacagaagaagaggagaaagagtaCTTTGTAGCCTTTGCACGTGTCTACAGTGGAGTAGTGCGCAGGGGTCAGAGAGTGTTTGTGCTCGGACCCAAGTACGACCCTGCCATCACTCTGCAGACGCTGACAGATGAGTGTTCAGTCCCTGACTCCATGCCCGCCATACCCCACATGGCCTGCTGCACTCTGGATCGGTTGTATTTGCTGATGGGACGAGAGCTGGAGGAACTCGATGAGGTTCCAGCAGGCAACGTTCTGGGAATCGGTGGGATGGAGGAGTTTATTCTAAAGTCAGCCACCATCTCGACCTCGGCTGCGTGCCCCCCCTTCACACCACTCAACTTCGAGGCCACGCCCATCGTCAGAGTGGCGATTGAACCCAAACATCCCAgcgAGATGCCCAAGCTGGTGCGTGGGATGCGTCTCCTGAACCAGGCTGACCCATGTGTGGAGGTTTTGATTCAGGAGAGTGGAGAGCATGTACTCGTCACAGCAGGAGAGGTTCACCTGCAGCGCTGCCTCGATGACCTCCGagagagGTTTGCCAAAATTGAGATCAGTGCCTCTGCTCCCATCATCCCATTCCGTGAGACTGTGATCCGCCCACCCAAAGTGGACATGGTGAACGAGGAGCTTGGGCGCCAGCAGAAGGTGGCAGTGATCCATCAAACCAAAGACGAACAAACCAAACTCCCAGAAGGGGTTCAGATAGATTCAAGCGGCCTGGTGACCCTCACCACCCCCAACAAAATGGCCACAATTGGAGTTCGGGCCATTCCTCTACCTGAGGAAGTGACCAGGCTGCTGGAGGAGAACGCAGAGCTTATCCGAACCATGGAGCACTTCAACCTGCAGGCACGAGAAGGCAAAGCTTTAGAGATTAGTTCAAAAACTCTGGAGGAAATACGTGACTTAAAGAATGAATTAGAAAAGCACCTTCAGGGCCGCAAGTGGAGGAATGCAGTGGATCGAATCTGGGCTTTTGGACCACGTCGCTACGGCCCTAACATTCTTCTAAACAGTGTTGAGGGATACCAAAGATCATCGGTGTGGCAGTTTCTCAATTtagagaaggagaaaagtgAAGGCACCATGCTGCGAGACTTCGATAACAGCATCGGTAGTGGGTTCCAGCTGGCCACACTTTCAGGCCCCATGTGTGAGGAGCCGCTGATGGGCGTCTGCTTCTCTGTGGAGAGCTGGGACATGAAAATCCCATCTCAGACAGTGCAGAAGGACTCACAGGATGACTCTATTTCTCAGCAGAGTTTGGAggcaaataataatgaatgtgaGCTTGGAGAAGACAGTGAGGCACAGAGCAGGCGTCGAGACATGGCCGACTGCTACGGGCCATTTTCTGGTCAGCTCATTGCTTCAATGAAAGAGGCATGCAGGTACGCCTTCCAGGCAAAACCACAGCGCCTCATGGCTGCCATGTACACCTGTGAGATCATGGCTACAGCTGAGGTCTTAGGGCGTGTGTACGGTGTCCTCTCCAAGCGTGAAGGACGTGTCCTCAATGAGGAGATGAAGGAGGGATCAGACGTGTTCATCATCAGAGCCGTACTGCCGGTGGCAGAGAGCTTCGGATTCGCTGATGAGATCCGCAAGAGGACGAGCGGCCTGGCAAGCCCTCAACTGGTGTTCACTCACTGGgagGTCATCTCCAGCGATCCGTTCTGGGTGCCCACTACTGAAGAAGAATATCTCCACTTTGGAGAAAAGGCAGATTCAGCTAATCAGGCACTGAAGTACATGAATGCCGTTCGGAGACGCAAAGGGCTTTACGTGGAGGAGAAGATCGTCGAACATGCTGAGAAACAACGGACTCTCAGCAAGAACAAATGAACTCTCCTTCACAGACAATTATTCCCTCATGTTTGAAAATTTCCTCTTACCTTGTAATGCTTTTCAGCTGAATGGGTGGGTAAAGTCTAACATTGTCCTGAGTTCCAGATAGATAGTTTAGTAGCTACTTTATTACAACAAACCTTCTGTGTAAATGATAGTACATATATAAATAGCAGTCTGGGTTATTACATCGATACAACTCTGGCATAATTGCTATGAAAATTCTGTGAAAATTTGAAAACCATGGTGGACATAACTGGAAGTACTGTGGAATATTTTAGTATaatgtggtctttttttttaaaattcagcatCATGATAATATcctaatgtgttataaaggcgTAGGCAAAGATAACATGACAGTTTCATATGGCGTGTACTTCATTTACACTGAGTTTGTGTACATGTAGCTAATAAATGATAGTAGTCATAATGTTGGACTGAACTGTGTAGGACCTTTCTGACAGAAATTTCTTGACTGATTTGAAGTTTTAGTATTATATATTAAACAGCCTTCGAGATAA

Function

GO: NA

KEGG:

id description
K14536 RIA1; ribosome assembly protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212223 lncRNA downstream 1841 10112028 ~ 10112242 (-) True G179372
TU211840 lncRNA downstream 339674 9770818 ~ 9774409 (-) True G179021
TU211823 lncRNA downstream 359704 9739531 ~ 9754379 (-) True G179004
TU211776 lncRNA downstream 486900 9625284 ~ 9627183 (-) True G178961
TU211728 lncRNA downstream 670156 9440919 ~ 9443927 (-) True G178914
TU212321 lncRNA upstream 236404 10486865 ~ 10487943 (-) False sh3gl3a
TU212324 lncRNA upstream 261160 10511621 ~ 10512024 (-) True G179466
TU212327 lncRNA upstream 264235 10514696 ~ 10515201 (-) True G179469
TU212342 lncRNA upstream 310942 10561403 ~ 10563452 (-) True G179478
TU212349 lncRNA upstream 324075 10574536 ~ 10576032 (-) True G179485
XM_026930847.2 mRNA downstream 40773 10068517 ~ 10073310 (-) True mex3b
XM_026930381.2 mRNA downstream 249298 9837999 ~ 9864785 (-) False LOC113536465
XM_026930380.2 mRNA downstream 249298 9837999 ~ 9864785 (-) False LOC113536465
XM_026930379.2 mRNA downstream 249298 9837999 ~ 9864785 (-) True LOC113536465
XM_034308511.1 mRNA downstream 255576 9837999 ~ 9858507 (-) False LOC113536465
XM_026930622.2 mRNA upstream 7846 10258307 ~ 10452771 (-) True adamtsl3
XM_026930623.2 mRNA upstream 7846 10258307 ~ 10330765 (-) False adamtsl3
XM_026930624.2 mRNA upstream 60303 10310764 ~ 10452763 (-) False adamtsl3
XM_026930581.2 mRNA upstream 236274 10486735 ~ 10523579 (-) True sh3gl3a
XM_034308760.1 mRNA upstream 241037 10491498 ~ 10523579 (-) False sh3gl3a
TU211855 other downstream 298858 9813892 ~ 9815225 (-) True G179035
TU211757 other downstream 590753 9522416 ~ 9523330 (-) True G178942
trnae-uuc_3 other downstream 1223385 8890627 ~ 8890698 (-) True trnae-uuc_3
trnar-acg_8 other downstream 1866321 8247690 ~ 8247762 (-) True trnar-acg_8
trnar-acg_7 other downstream 1867308 8246703 ~ 8246775 (-) True trnar-acg_7
TU212647 other upstream 993514 11243975 ~ 11246305 (-) False nppc
TU212749 other upstream 1158631 11409092 ~ 11415440 (-) False G179803
TU212758 other upstream 1245613 11496074 ~ 11503962 (-) False LOC117598430
TU213621 other upstream 2466900 12717361 ~ 12720476 (-) True G180485
trnam-cau_27 other upstream 2985942 13236403 ~ 13236475 (-) True trnam-cau_27

Expression Profile