RNA id: XR_004579065.1


Basic Information

Item Value
RNA id XR_004579065.1
length 2945
RNA type misc_RNA
GC content 0.39
exon number 6
gene id si:ch1073-365p7.2
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7580434 ~ 7588815 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaagaagaaacagaaaccCGAGACCGTAACACTGCACTTTGTACTGAGTTTGCTAAGGCAATAAAATCTCGTAACAGTAGGTGAGGTTAAAGCTGAGGACATTTATACTGAGAGTTAAATGAAATTATCTTCTACTTCTGAAGTAGTATTTATGTAtcttatttttctatttctaacTATAGACTATGTTAAAAGAGATGAGGGAGCTATGGTATTTAGCAGCTACTGTGTAAACAAAGTGATTTAGGCAGTGATACATTTATTCCCTTTAAACAGAGTAAATCTAATCTGCACAATGTAGTCTTATTCCAGCTAGGTCTTGTTTGTTCTGAAGAGCAGtacagtagcagtagtaggtTTGCTTTGAACTGAAACGCATAATGAAACGAAATAAACCATCAGTGGAGACGTttggaaagagacagaaaggagaaGAACAAGAGCAAGGAGAAGGAAAACATGGCAGCAAACTTAGAGTTTTGCTGTATGGAGCAAAGCTGTCTGGGAAAAGCTCTGTGATTAACACTGTGTTTGGAAAAGATCTGCTTCCGACAAACAGAAGGACAGTTTATTGTAAGACATTTCAGGGGAATGTGCATGGAAGAGAGCTGATGCTGGTTGACACTCCTGGCTGGTGGAAAGATTTCCCACTTAGTGACACTGCAACCTTTCTTAAAAAGGAGCTTGTGTATGGAGTTTCTTTATGCAAACCTGGACCCCATGCAATCCTTCTTGTCATAGAGGTTGGCCTTCCATTTAATGAGAGACACAGAAAATCTATGGAGGAACACCTTAGCCTTCTTGGTGACAAAATCTGGGCACACGTCCTTGTGTTATTCACCAAAGGTCACTCCACAGGTGCCAAAACTAAAGAAGTAGAGGAATATATAAAAACTGGAGGAGAAGCCCTACAATGGGTGACAGAAAAATGTGGGCACAGATGTCATTTCTTTGATAATACAGTCCCAAATGATGTCTCACAAGTCTGCTCATTACTGGACAAGATTGAGGTTATAATCCAAACAAACAACACAGCTTGTTTCAAAATTGATCCAAAAATATTGCAGGAGtcagaggagtggaggaagaATGTGATGAGAAGAGCAAGAGACAGGGAGATAGgcattaaagaacaacaaaaaaattacgAGCTGAGAATTATGCTGGTGGGTTGGGTGATGTCTGGAAAGAGTGCATCTGGGAACACTATGCTGAACAAAGATGAGTTTGCTGTTACTGGCAAAAGCACTGCTAAATGTCAAATAGGACATGGAGAAGTTTCTGGAAGGCCAGTAACTGTGATTGATACACCGAGTTAGTGGAAGTTCTTTCCATCTCAATACACCCCAGAATGGATCAAGTCTGAAATTCTGGACAGTGCATTTCAGAAGCATAACTCCCCACACTCCATACTTCTAGTTATTCCAGCAGACACGTCTTTCAAAGAAGAACAGAGAAAAGTCATTGAGGAGAACATGAAGATTCTGGGAGAACAAGTGTGGAGACACACCATAATACTGTTCACATGGGGTGACATGCTTGGAGACATGACCATAGAACAGCACATTGAGAGTGAAGTTAGCAAGACACATCCAGCCACTGACATTAAAGCTACAAATGAGACTCAAGGCAATACATCTCACAGGGAGACGGAGTCTCACAGGCATGGTGAACTTCaaggaaaagagaaacacagtTTGAAACTCAAGGATCAAGTTAAAGAGATGCTTGATCGAGAATGGAGCAGGCGAGAGGAGACACTGCTGGGAACACTTCAGGAAATGTTAAAGGATCACATATCTGAAACATGTTCCATTCCAGACCAGGATGAGATAGAATGTTCCAGGCAGAAGGTGTTGAAGTGGCTTGATGTCTCAACACCAACATCTGGATGTGCATCAGCTTCAAAAAGCTCTACTTAAATGGACATGTCTACTGTCCCTAAGAGCctttagaagaagaagagccTTTGATACTTTAATGGAAAGATGGAtctgaaaattggaaaaaatgttGTACAGGAGAGTCAGACATTACAGTTACGTGGAAACACTTTTTGTATGCACAAACCCagatttgatatttaaaatactGAGTCTCATCTCATGGCATTTGCCACACCTATGTACATGGCCTGTTCTGCCCTTCAGCATAAACAGATGGTGTGACCAACTGTAACACATCATGGAATGAGATGTTTTAGAGCTGGCACAATATGTGAACAAAACTTACTGTTTCTTCAGAAGTCTCAGCATCAGAAGATTCACATTCTCAATTTATACCAAACGATACATTTTCTAGAAACTGGTGTAATCTGCAGTAGCATTTTTGAATATATTCTGACCTTTTCTAACATATCTTAGAATATTCGTTCAGTTAAACAAggcacaaaaaaacattcagttttcCATATAAgacttttatttgatttttgaaCAATATCCGTCATGGTGGGAGAATGCTAGAGGATACATAAGATCTAACACCAGCACATTTTGTAGATTATATACTCCACAAGCAAGGAATTCCTTTGTCCCAAGTCACTGAGAACCAATTAAAATAAGCTTTCGAACTGACTGAAATGTCCTCTCAGTTTGCGAAGGGAGACAAAATGACAAGGCTGAAAAATAGTTACGTTTGTATAACAAGCCTTATTgcaaaatttagattttttgctCAGATCTTTGATTGTTCAAGGTAGTCATATAGTAATGCGGCAACAAGGTTGTAACTGTATGCTTTGCCAGTGCTGTGCCATAATCATATTACTGAATCCAGCtgcaaaaaaacattattactgTTTCTGGACACAGAACATAACAGAATTAGTAGATACAACTGTTCATATAATTATTCTGTCCTTTATTAAATAtctgtattacatttttatagctAAGAAATGCTAAAGATGACTTATAGAAATAAATCTATCTTCTTCCTACTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210347 lncRNA downstream 28684 7551522 ~ 7551750 (-) True G177691
TU210337 lncRNA downstream 71246 7508851 ~ 7509188 (-) True G177682
TU210182 lncRNA downstream 101046 7479158 ~ 7479388 (-) True G177562
TU210179 lncRNA downstream 109224 7470974 ~ 7471210 (-) True G177559
TU210170 lncRNA downstream 138039 7441891 ~ 7442395 (-) True G177550
TU210367 lncRNA upstream 87101 7675916 ~ 7676670 (-) False igf1rb
TU210390 lncRNA upstream 118696 7707511 ~ 7755018 (-) True G177729
TU210396 lncRNA upstream 140098 7728913 ~ 7750806 (-) True G177733
TU210491 lncRNA upstream 337478 7926293 ~ 7927058 (-) True G177807
XR_003403692.2 lncRNA upstream 682292 8271107 ~ 8275360 (-) True LOC113536653
XM_026930582.2 mRNA downstream 2594 7564380 ~ 7577840 (-) False ero1b
XM_026930583.2 mRNA downstream 3585 7564380 ~ 7576849 (-) True ero1b
XM_034308740.1 mRNA downstream 32614 7515247 ~ 7547820 (-) True nid1a
XM_026930575.2 mRNA downstream 79534 7492501 ~ 7500900 (-) True rbm34
XM_026930317.2 mRNA downstream 96317 7480422 ~ 7484117 (-) True si:dkey-56d12.4
XM_034308794.1 mRNA upstream 6200 7595015 ~ 7623473 (-) False mctp2b
XM_026930594.2 mRNA upstream 6200 7595015 ~ 7623473 (-) False mctp2b
XM_026930592.2 mRNA upstream 6200 7595015 ~ 7623472 (-) False mctp2b
XM_034308793.1 mRNA upstream 6200 7595015 ~ 7623472 (-) True mctp2b
XM_026930595.2 mRNA upstream 8468 7597283 ~ 7623473 (-) False mctp2b
TU210154 other downstream 96476 7481449 ~ 7483958 (-) False si:dkey-56d12.4
TU209010 other downstream 1872169 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 1872169 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 2266180 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 2289840 5290502 ~ 5290594 (-) True trnai-uau_1
trnar-acg_4 other upstream 653291 8242106 ~ 8242178 (-) True trnar-acg_4
trnar-acg_5 other upstream 653916 8242731 ~ 8242803 (-) True trnar-acg_5
trnar-ucg_7 other upstream 655834 8244649 ~ 8244721 (-) True trnar-ucg_7
trnar-acg_7 other upstream 657888 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-acg_8 other upstream 658875 8247690 ~ 8247762 (-) True trnar-acg_8