RNA id: XM_034308755.1


Basic Information

Item Value
RNA id XM_034308755.1
length 2367
RNA type mRNA
GC content 0.59
exon number 15
gene id sox6
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 1324651 ~ 1497726 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgagttGTAATGCCATCCAGTGCTGAAGTGGTGAGCGTCGGAGAGGAAAGAGGGCCAGTGGCTGAGGAGGACAGACTCAGAATCATGTCTTCCAAACAAGCCACCTCTCCGTTTGCCTCGGGTGCAGACGTCGGTGAGGACGGAGCTGGTCAGGAGCGCCTGGTTTGGGAGAAGGATGAAGGCACAGAGCCGCTGGCAGCACCACAGCTGCCGATTCACAGCCTGCTGCACGGCAAGATGCACGGCGAGGAACTGCCACCCGTCAGCAGCAGCGTGCCACCTGAATCCGACTGGGACAGCCTGGTGTCGGCCCAGCAGCGCatgGAGTCAGACAGCAATAAAGTATGTTCCCTCTACTCCTTCCGGAATAACTCTACCTCTCCGCACAAGCCGGAGGAGGGGGCACGGGAGCGAGGTGACCTGCTGGGAGCCTCTGCCTTCGGAACGCCGGAGCGCCGCAAAGGGAGCCTGGCCGACGTGGTGGACACACTGAAGCAGAAGAAGCTGGAGGAGATGACAAAGACAGAGCAAGATGAAACCTCCTGCATGGAAAAACTGCTTTCTAAAGACTggaaagagaaaatggagagactgAACACGAGCGAGCTTTTGGGAGAAATACAAGGTACTCCAGAAAGTCTGgctgagaaagagaggcagCTTTCGACGATGATCACGCAGCTGATCAGCCTGAGAGAGCAGCTCTTGGCTGCCCACGATGAGCAGAAGAAGCTGGCGGCCTCGCAGATGGAGAAGCAGCGGCAGCAAATGGAGCTGGCTCGACAGCAGCAAGAACAAATCGccagacagcagcagcaacttcttcagcagcagcacaaAATCAATCTCCTTCAGCAGCAGATTCAGCAGGTCCAGGGTCACATGCCTCCTCTCATGATCCCCATTTTTCCACACGACCAGCGCACTCTGGCCGCTGCCGCCGCCGCCCAGCAGGGCTTCCTCTTCCCCCCAGGCATGTCCTACAAGCCAGGTGATAACTACCCGGTGCAGTTCATTCCTTCCACAATGGCAGCTGCCGCCGCGTCAGGACTCAATCCTCTTCAGCTCCAGCAACTGTACGCCGCCCAGCTGGCCAGCATGCAGCTCTCTCCAGGAGCCAAGATGGCGCCACTGCCCCAGCCACCTAATTCTGCAGGGCCACTCTCACCTGGGCCCAAGAGTGAGAAGAGATCCTCCAGCCCACTGGGCCAAGTCAAGGAGGAGGGAACGCAGCCCTTGAACCTCTCGGCCCGGCCTAAGACAGCTGAGCCAGTGAAATCCCCCATGTCCCCGACACACAGCCTGTTCCCGGGCAGCAAGAGCAGTCCGAACAGCCAGCCCAAGAGTGGAGGCATCCCTAGTCCCCTCGGCTTGGGTCGAGGATCATCCCTCGATATCTTGTCTAACCTGAACTCCACGGCACTATTTGGAGACCAGGATGCTGTGATGAAGGCCATCCAGGAGGCGAGGAAAATGAGGGAGCAGATCCAACGTGAGCAGCTGCAGCATCACCAACAGGGCATGGAGGCTAAACTCTCAGCTCTCTCAGGCCTCGGTCTTAACAACTGCAGGGCTGACAAGGAACGAGTCCACTTTGAAAGTTTGGGGCATCATCTGGGAAAACTGGGAGACGATGGGAAGATCGGACAGAGAGTCATTGACCTGACCAGGCCAGAGGACCTCGACGGAGGCGCCAGCACTACCGAAGCCCGGGTGTTCAGAGAATCGCGAGGACGGAACCCCAACGAGCCACACATCAAGCGACCCATGAACGCCTTCATGGTGTGGGCCAAGGACGAGCGCCGCAAAATCCTGCAGGCTTTCCCGGACATGCACAACTCCAACATCAGCAAAATCCTGGGCTCTCGCTGGAAGGCCATGTCCAACCAGGAGAAGCAGCCGTACTATGAGGAACAGGCTCGTCTGAGCAAGATCCACCTGGAGAAGTACCCCAACTACAAGTACAAGCCTCGGCCCAAGCGCACGTGCATCATCGATGGCAAGAAGCTGCGCATCGGCGAGTACAAGCAGATGATGCGCTCGCGGAGGCAGGAAATGCGCCAGTTCTTCACTGTGGGGCAGCAGCCCCAGACTCAGCTCCCGATCAGCAGCAGCGCGGGCGTCGTCTACCCCGGAGCCATCAGCATGACCTCAGACTGCTCGAGCAACTCGGCCAGCCCCGAGCCCACCGTGCCCGTCATCCAGAGCACCTTCGGCATGAAGATGGAGCCCAGCGTGCCCAGCGTGGTGCCCAGCGAACCGGTCAACGGCGAGGACGACATGGACATGTACGAGGACTTCGAGGACGAGCCCAAATCGGACTACAGCAGCGAGAACGAGGCGCAGGAGCCCGTCAGCGCCAACTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206256 lncRNA downstream 267806 1056698 ~ 1056907 (-) True G174246
TU206255 lncRNA downstream 268088 1056188 ~ 1056625 (-) True G174245
TU206254 lncRNA downstream 270271 1053164 ~ 1054442 (-) True G174244
TU206253 lncRNA downstream 274907 1049305 ~ 1049806 (-) True G174243
TU206186 lncRNA downstream 276990 1046060 ~ 1047723 (-) True G174183
TU206375 lncRNA upstream 20916 1465494 ~ 1469982 (-) True G174345
TU206382 lncRNA upstream 87238 1531816 ~ 1532214 (-) True G174352
TU206409 lncRNA upstream 190814 1635392 ~ 1635656 (-) True G174379
TU206422 lncRNA upstream 272259 1716837 ~ 1717245 (-) True G174390
TU206660 lncRNA upstream 412305 1856883 ~ 1904081 (-) False cd82a
XM_026930733.2 mRNA downstream 164751 1148056 ~ 1159962 (-) False tmppe
XM_034308821.1 mRNA downstream 164751 1148069 ~ 1159962 (-) False tmppe
XM_026930732.2 mRNA downstream 164751 1153081 ~ 1159962 (-) True tmppe
XM_026930759.2 mRNA downstream 176737 1138521 ~ 1147976 (-) True slc38a8b
XM_026930545.2 mRNA downstream 187010 1131031 ~ 1137703 (-) True aph1b
XM_034308884.1 mRNA upstream 72768 1517346 ~ 1638262 (-) True plekha7b
XM_026930538.2 mRNA upstream 202542 1647120 ~ 1653478 (-) True rps13
XM_034308641.1 mRNA upstream 223048 1667626 ~ 1687076 (-) True caprin1a
XM_034308644.1 mRNA upstream 332763 1777341 ~ 1831151 (-) True ext2
XM_026930876.2 mRNA upstream 387748 1832326 ~ 1874531 (-) False tspan18a
TU206257 other downstream 265479 1057656 ~ 1059234 (-) True G174247
TU206214 other downstream 361635 961496 ~ 963078 (-) True G174207
TU205424 other downstream 1290581 30281 ~ 34132 (-) True calca
XR_003403705.1 other upstream 202751 1647329 ~ 1647458 (-) True LOC113536795
TU207201 other upstream 1157836 2602414 ~ 2603211 (-) True G175098
TU207151 other upstream 1309777 2754355 ~ 2756525 (-) True G175048
XR_003403703.1 other upstream 1694249 3138827 ~ 3138907 (-) True LOC113536793
XR_003403704.2 other upstream 1695492 3140070 ~ 3140161 (-) True LOC113536794

Expression Profile