RNA id: XM_026930724.2


Basic Information

Item Value
RNA id XM_026930724.2
length 4689
RNA type mRNA
GC content 0.38
exon number 9
gene id vat1l
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3962830 ~ 3989596 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAATCTGGTAATAGGTGGACCGACTTGGACCGCTCCTCTCCGGGCAGAGCTGAAGTCGCGCCAGACCTGCTGGAGGAGCATCGTCAGGACCGTTAGACCCGCAGAGATGGCGAAGGAGGGAACGGAGACGGCGGAGGAAACCGAGCAGATGATCGAGAAGAACGGAGCTAAAGAGCCGGAGAGCGCCGTTAATGCGCCGGATTCCAAGGAAATGCGCGCGGTGCTGCTCTCAGGCTTTGGGGGTCTAAACAAACTCAAAGTGACCAAGAAATCCATGCCTGAGCCCCAAGAAGGAGAAGTCAAAATTCGCGTTAAAGCATGCGGCTTGAATTTCCTTGATCTCATGGTACGTCAAGGAAATATTGATAATCCTCCAAAAACCCCTTTAGTGCCTGGATTTGAATGTTCTGGAATAGTGGAAGCTGTGGGAGAAAATACTAAAGGCTTCGAGATCGGGGACCGGGTAATGGCCTTTACAAACTACAACGCCTGGGCCGAGGTGGTGTGCACGCTGCAGGATTGGGTTTATAAGATACCTGATGAGATGACTTTCCCCGAGGCTGCTGCTTTCTCTATGAACTTTGTGGCTGcgttcatgatgctgtttgaaGTGGCCAATCTCCGGGAGGGGATGTCTGTTTTAGTTCACTCAGCAGGGGGAGGAGTGGGTCAAGCTGTTGCTCAGCTGTGCGCCACCGTCCCCAACGTCACAGTGTTCGGCACAGCCTCTCCCTTCAAACACGAAGCCATTCGGCACTCCGTCACACACCTGTTCGACAGAAACCTCGACTATGTAGCAGAAGTTCGAAAGATCTCCCCTGAAGGAGTGGACATTGTTCTCGATTGTCTGTGTGGTGAGAACACGGGGAAAGGTTTGAGTCTCCTGAAGCCCCTTGGCACATACATCCTTTACGGTTCTTCAAACATGGTGACAGGCGAGACGAAAAGTTTCTTCACCTTCGCAAAATCTTGGTGGCAGGTGGAGAAGGTTAACCCCATCAAACTGTACGAAGAAAACAAAGTCATGGCTGGATTTTCGCTGCTCAGCCTCCTCTTTAAGCAGGGCGGCTGCAGCCGAGTGAAGGCCGCTGTCAACAAACTGCTTTCGCTCTACAGCGAGAAGAAGATCAAACCTTTAGTGGATTCTCTCTGGGCTCTTGAGGAGGTGAAGGAGGCCATGCAGAGAATCCACGACAGAGGAAACATCGGAAAGCTGATTCTGGATGTGGAAAAGTCTCCCACTCCTTTAATGGCGAGCGACAGCACCGAGACGAGCGAGGcaggtgaggaagaggaggagcatGAAGGAGACAGTGATAATAAAGAGCGAATGCCCTTCATCCAGTAGACCCCAGTGATGACCCCCAGTGGAAGGAGAGACTGTGACCGGATGAGTCTCCTGTGTTCCCCCACGCTGTAGTGAAGTGTAcgagtgtgtgactgtagtgCGTCTGAAAATATCCTTCATGCCAACTGTCCAACTCAAGTGCCATTCCCAGCACAGTGCTGAATTGTTCCAGTGTTTCCTGACCATGTGTGCTCTTCTTCTTTACAGGTCTGTGGATGTTTTGAACGTGTGTAGTTCTGTTGTATTAGTGACTGAGGAAAGCAAGGCTCAGTGTCCGCTGTGTCCCTTCAGGTTTCCCACAGCCTGTAGGGCACCGTGCTAGTCATCACACAAGAGCAAGGAAAAAATTCTTTATTAGAGATCTTCAGTAACCCAAaacctgaaagaaagaaagaaagaaagaaagaaaagttaaattttttaaGGCTTTCAAAGAATTAACTATTTACATTCATAAGTGTTTCTAACTGAaattatagaaagaaagaaggaaagaaagaaagacagaaagagaaagaaagaaagaaagaaagaaagaaagaaaaaaaaagttacattttttaaggCTTTCAAAGAATTAActatttacattcataaatgtttCTAACTGAAATtctaggaagaaagaaagaaagaaagacgagtgagaaaaatgtttaattatttgtaaGGCTTTCAAAGAATTAACTATTTACATTCATAGATATTTctaactgaaaaagaaaaaagaagtaaagaaaatgtaaagctatTTTAAGGCTTTCATAAGCTTAacaatttaaatgtgtaaatgtttctaaCTGAAATTATagtaaaaaggaaagaaagaaagaaagaaagaaatgaaaagaaaaagaaaagaaatggagtgagaaaaaaagtgaagttATTTTATGGCTTTCAAGGGCTTAACTATCTAAAGTCATAAATGTTTCTAACTGAaattatagaaagaaagaaaagaaattaagaaaaaggaagagtaaacaaaatgtaaagcTAATTTTAAGGCTCTCAAATGCTATcaatttaaaagtttaaaaatgactgtGAAGAATGTTACATTATTTTCAAGTCTTTCAGAAGTTTAACAATATAAAAGTGTTTCTAACCAAAATTAtagtaagaaagagagaaagaaagaaagaaagaacaaaacaaacaaacaaaaatcaagcAAAAAATGTTGagatgtaagaaaaaaattagaggaaaatggaaacagaagaaagaaagaaagaaagaaagaaagaaacaaagaaagaatgtaAAATTATTCTTAAAACTCTTGCCTTATagtttaaaagtgtaaatgatgGTTGAGATtatgagaaagacagaaagagagagagagagagagagagagagagaagagattaacattttaaatgattgaTGGAAATGTTATGGAATAAAAAGATTTACTTAGTGCTGTGTAcaatatattaatgtttatcaGTAAGAAATACAACTGAttcttagaaagaaagaaagaaagaaagaaagaaagactcaGTGTCCCTTCAAAGACAGATTTCCCAGAGCCTTTGGGGTTCCACGCTGGTCACACGGCAACAGCAAAGAAAgtaactctttctttcttcgaTTATAATTCACAAATAATGGAGATTTTCAGTAAAAGTACAAGCAGAAGAGCAGCGTGAAGGAAAAGCAGTGGATGTGAGAGGATTTCTGAGTCCTGTTGGCTTTGTgattctgcatgtgtgtgtgattctgtgtTGTGTTTACACTCTGGTGCCTGTGCTGAGTTATTGTTtcaaaaagtatatttttgcAAGAGTGTAATGTGTATAGAGAGAACTGTACCTGTACCTGTACCTGTGCCTGTAACTGTGCCTGTACCTCTCCATACCATATAACTGAACCCTGTTCTGTGCCTGTATCACATATACTGTACTCTGAAAGAAGGACATGCATCATACGTACCTAATAATCACACATATCTGATCAGCATAAATATCTGAGAATCATATATATCTAATCTAATAATATGacattatgattttaaaaaaaggacagaatTTAAAAGTCAACCTTTATTAGTGAAGTTAAGATTTAAAAGACTAGCTAGCTTTTGGGACATTTATCAACAGCAAGTAAGATGATTTATTAGAAACAATGTCAAATTAGAAACAAAgtagaaaggaaggaaggaagaaagaaaggaaagaaaaaaatgaatgagtgaaagtAAGAAGGATGGCTGTACTTTCTTTTGTGCCAGTTTGTGCTGaaggaaatataaaattatttttatactctCTAAGCCTTaacttttgaaaatgtaaatggtAATGATTGAAATTATGAGGAGGACAGAAGCAAAAGAAGATAGAAGGGAAAATGTTCAATTATTTCTAAACctctcaaaaagaaagaaggaacaaAGAAAGATTTGAAAGTAAGCAAAAAATAACTTGAAAAATcataagaaagagagaaaacacttgaaagagaaagaaagaaagaaagaaaaagaaagaaagaaagaatggagggaaatgtaaaattatgtttatatgCTCTAAGCCTTAacttttgaaaatgtgaatggTAATGACTGAAATTATGGGGAAGACAGAAGCAAAAGGAGATGGAAGagaaaatgtgtaattatttcTAAACCtctcaaaaaagaaagaaggaaagaaaaaagactgaaagtATAACTTGAAAAATCAtaggtgaaagaaagaaagaaacaaaatttaaaaattgcttgTAAAACTAAgtgttaaagaaagaaacaaagggaagaagaagagaaagaacattctaaattgttttaattattaaagctCCCAAAACTTTGAGCTCGTATAAAAAGCATCTCATAATCATACAGCTctgataataaaacattaacagtTAGATGAAGGatagaaattaaaaaactgAACAGTTATTAATAATTACCTTATCTGACAAGAAACTAGTCTCTAATCTTCATTGCACTTTCATCAACACCATGATGAGGAATGAACAGTGACGAGGTCAGTGATAGGCTGCGCTCAGTATTACACACTCCAGTCTTTCCATAACGCCAGTATGTTGTGTGAAATTACAAACCCGGGATATAAAATggctttttcctgtttttttttttttattttattttattttttgcctaTAGTGTCTCAAGTGTGTGAAAGCTCATTGACTTGCCTTAAAAAGTAAAACCCTTCATGCTTGGTAATTGTGTCTAGAGTCGTTCCAGGCAGAAAACGGAATAATGTTTAGATGTAGTGTAGCTGATAGTGCTTTTACTATGTTGTGCGTAGAAATTCGGAGTTACGGAAATAAAAAGACCTGCAGAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207893 lncRNA downstream 39889 3922313 ~ 3922941 (-) True G175676
TU207812 lncRNA downstream 143300 3792537 ~ 3819530 (-) True G175610
TU207813 lncRNA downstream 166905 3795679 ~ 3795925 (-) True G175611
TU207665 lncRNA downstream 380859 3549865 ~ 3581971 (-) True serf2
TU208008 lncRNA upstream 86548 4076144 ~ 4137879 (-) True G175767
TU208017 lncRNA upstream 94376 4083972 ~ 4086193 (-) True G175775
TU208115 lncRNA upstream 309381 4298977 ~ 4299868 (-) True G175854
TU208186 lncRNA upstream 509882 4499478 ~ 4504321 (-) False lto1
TU208239 lncRNA upstream 632532 4622128 ~ 4622987 (-) True G175963
XM_026930775.2 mRNA downstream 2877 3954998 ~ 3959953 (-) False clec3a
XM_034308850.1 mRNA downstream 3203 3954998 ~ 3959627 (-) False clec3a
XM_026930773.2 mRNA downstream 3639 3954997 ~ 3959191 (-) True clec3a
XM_026930774.2 mRNA downstream 3646 3955000 ~ 3959184 (-) False clec3a
XM_034308620.1 mRNA downstream 10680 3924247 ~ 3952150 (-) True usp47
XM_034308466.1 mRNA upstream 3386 3992982 ~ 3996453 (-) False bola3
XM_034308467.1 mRNA upstream 3386 3992982 ~ 3996453 (-) False bola3
XM_026930790.2 mRNA upstream 7467 3997063 ~ 4005076 (-) False bco1
XM_034308983.1 mRNA upstream 7467 3997063 ~ 4003519 (-) True bco1
XM_034308411.1 mRNA upstream 17812 4007408 ~ 4017932 (-) False bco1l
XR_003403696.2 other downstream 52939 3855191 ~ 3909891 (-) False mical2a
XR_004579078.1 other downstream 52941 3855191 ~ 3909889 (-) False mical2a
TU207666 other downstream 390568 3569341 ~ 3572262 (-) True G175497
XR_003403706.2 other downstream 661560 3301139 ~ 3301270 (-) True LOC113536796
XR_003403704.2 other downstream 822669 3140070 ~ 3140161 (-) True LOC113536794
TU207939 other upstream 3130 3992726 ~ 3996433 (-) True bola3
XR_003403702.2 other upstream 59269 4048865 ~ 4049043 (-) True LOC113536792
XR_003403701.2 other upstream 62993 4052589 ~ 4052767 (-) True LOC113536791
XR_003403709.1 other upstream 105611 4095207 ~ 4095262 (-) True LOC113536799
XR_003403699.1 other upstream 107118 4096714 ~ 4096770 (-) True LOC113536789

Expression Profile