RNA id: XM_026930728.2


Basic Information

Item Value
RNA id XM_026930728.2
length 1937
RNA type mRNA
GC content 0.48
exon number 5
gene id saxo2
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10251725 ~ 10257578 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCCATAGAAACCGTGTGCGGTGTGTCGCGAGCGCGGTGTAGAGAGGTTGGCAGTGAGTGCGGCTCGTGAGACTGGAATTAAATAAAGCCGGTTTAAAGTCACTGCTGTTTCAGTGTTACAGACATGAagcggctgtgtgtgtgtgaaatctgcAACTGCGGACGCCACCGTTGCACACAAGAGCCCACGGCACTCTACAGGAAGGGCAGCCAGGGTTGTGTGGTGAGTGAGTACACTGAGAAATACCCAGGCTACAAGAGTTATCAGCCACCCAAGAGTCTTAAGcccaaacaggaaaaaaagagtaGCCGTGAACCGATGGAGGGAACCACCACCTTCagGTCTGATTTCGTTCTGTATAAAGTGAGCCAGCGCCCTGGAAAACAAAGGGCTGAATACAAACCTAATCCAGGTGAGATTGACTTGGCCACTACCTACAAGCAGGAGTTTAGCCCTTATAAGCTAGAGCCTGTTATACCGTGGCGTCCAAAGGAGAGGATACAAGGTGCTACCGGGAAGCTGGACACAGTACCAACCTATAAAGaaCATTTCCGTCAGTGGGAAATTAGCAAGTGGGAGTCCCCCAAACACAAGGTGTCTTACCATCCTCCAGCTGAGAAGTTTGGAAATGCCACAACATTCCAGGATGATTTCATTCCACGAGGTCTTGTTCCACGTGAGAGCTTCAAACCTTCAAATGTAGCCAAGCTGTCTGATGCTCCTTTCGATGGAGTGACCAGTAACCAGCTGAATTATATCCCTCACCCAGTGGAAGTGCATTTAGTCAAAGCTCCTCATGAGTACAAACCCAGTGACCAGCCTTTCCAAGACCTCACAACGCACCGGAATGACTTCCAGGGCCTGGCAGGCCAAATGCCTAAGAGCTGCAAGCCTGAGCACATCAAAATGTCCTGTGATGCACCCTTACAGAGCAGCACTGAGTTCCGTGATCGCTTCCAGCCGTGGGCTGCGTCTCCGACACGGCTGCAGAAAACGTTGGAGTACGTGAGTCCTACAGAGGAAATGGATCTAAACACGACAACTGGCACAACCTTCATCAAACACCATATCCAGCCATTCGTCTCCGCTAAGCCTCTGCCGAAGCCAATTCGTTCCTCTGTTCCTTTTCAAGGCAACACCACCACGAAGGAGGATTTTAAAGCCTGGAAAGCCCAGCGCCAAGAAATGATCCGCAAAGCCCCAGAAATCCACAGAGACAGCGGGAAGATGGAGGACATGAGCACCTTTAAGGCCCATTACATCCAGCACCAACTGCAGCCCAATATCAGCTGCAAGCCTCTCACTGCCCCACTGCGGAGTGAAGCACCTTTGGATGAAGAAACCACGTACCGCAATGAGTTCACGCCCAAAGAGATAAGAGTGTGTCCAGCCAGCTTGGAGTCAGTGCCGGGGTTTGTCTTTGAGAAGGTTGATGACAGAGGTCACAGGTTCTTCCGTAAACTGAGCTCCCAGGAGCAGATGTCTACAGGGTGTGAGGTGCAGGCTCCTAACGCAGTGGCCATGGTGTCTTAAGAGCAAAGCTagctaaaggaaaaaaataataaactcatCTCTCATAACTTAAAGCTTAATCAGTATATACGATTGTTTTAAAAGGTAAATCTAAGTGGCATTATGACAAgattaatgaaatgtatttaaaaaggtAAGAAGTATCAGATTGAACATCTTTAGACTAACAGTGTTGCCATGATGAATGAAAATGGTGGAaaggtttaaatgttttaaaagaatTCAAACTGTATAACAATTAGATAGACAGAAGTAATTTTATATGAAATTGCATATGGTGATTATACTGGTGGGGGAACGGAGGCTTAGtggtttgcctcacacctccggggttgggggttcgaatcccgcctcccccttcaggggtttcctcccggtactccggtttcctcccccagtccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211918 lncRNA upstream 177708 10073818 ~ 10074017 (+) True G179085
TU211639 lncRNA upstream 344279 9824446 ~ 9907446 (+) True G178839
TU211632 lncRNA upstream 468979 9782541 ~ 9782746 (+) True G178834
TU211608 lncRNA upstream 501012 9750445 ~ 9750713 (+) True G178817
TU211587 lncRNA upstream 611089 9634759 ~ 9640636 (+) True G178798
TU212279 lncRNA downstream 229119 10486697 ~ 10491773 (+) True G179425
TU212280 lncRNA downstream 234455 10492033 ~ 10492469 (+) True G179426
TU212281 lncRNA downstream 239070 10496648 ~ 10497140 (+) True G179427
TU212282 lncRNA downstream 239910 10497488 ~ 10497712 (+) True G179428
XR_003403698.2 lncRNA downstream 525547 10783125 ~ 10784114 (+) True LOC113536738
XM_034308703.1 mRNA upstream 429496 9792080 ~ 9822229 (+) True il16
XM_034308705.1 mRNA upstream 429496 9792081 ~ 9822229 (+) False il16
XM_026930479.2 mRNA upstream 429496 9792081 ~ 9822229 (+) False il16
XM_026930481.2 mRNA upstream 429496 9792081 ~ 9822229 (+) False il16
XM_034308704.1 mRNA upstream 429496 9792083 ~ 9822229 (+) False il16
XM_034308925.1 mRNA downstream 202543 10460121 ~ 10479323 (+) True lmnl3
XM_034308924.1 mRNA downstream 202543 10460121 ~ 10479323 (+) False lmnl3
XM_026930793.2 mRNA downstream 224593 10482171 ~ 10483611 (+) True cx36.7
XM_034308892.1 mRNA downstream 297707 10555285 ~ 10563493 (+) True LOC113536420
XM_034308893.1 mRNA downstream 307681 10565259 ~ 10579393 (+) True rubcn
TU210703 other upstream 1980976 8253421 ~ 8270749 (+) True LOC113536578
TU210704 other upstream 1980976 8255867 ~ 8270749 (+) False LOC113536578
trnar-ucg_8 other upstream 2003637 8248016 ~ 8248088 (+) True trnar-ucg_8
trnar-acg_6 other upstream 2006701 8244952 ~ 8245024 (+) True trnar-acg_6
trnar-ucg_6 other upstream 2008231 8243422 ~ 8243494 (+) False trnar-ucg_6
TU212529 other downstream 838575 11096153 ~ 11098811 (+) True G179632
TU212546 other downstream 902768 11160346 ~ 11161125 (+) False G179643
TU212545 other downstream 902808 11160386 ~ 11161597 (+) True G179643
TU212547 other downstream 902808 11160386 ~ 11161217 (+) False G179643
XR_003403700.1 other downstream 1154482 11412060 ~ 11412127 (+) True LOC113536790

Expression Profile