RNA id: XM_026930730.2


Basic Information

Item Value
RNA id XM_026930730.2
length 1641
RNA type mRNA
GC content 0.45
exon number 7
gene id hsh2d
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13088273 ~ 13094963 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAATATGTAAAGCGAGCCGGTGCCATAAGCTCGTTTCCGGAAGGCGCGCGCGAGAACGCAGAGGGCAAAGGACCCAAGCACACTCGCTCGCTCGCGCTTGGAAGCGTTGACGCTGCtgtaactcacacacacctctgaagCAGTAGATCCGGGATGAGAAGAAGGAAGCTAtgaagtgttgtgtgtgatgtcgGTGTGAGAAGCTCGTGCACTCGAACAGCTGTGTTAAAAGCAGCTTAAATCCAGGGCACAGGTTGTACACTGAGTCATGGCTGAAGCGGTAACACCCGAAGAAGTCATCGCCTGGTTCATAGAGTACCAGAACAACCACATCGCGAAGGACGGAGTCATCCCCAAGTGGTTCCATGGCATCATATCCAGGAAGCAGGCAGAGGAAATGCTAATGATCAAACCTCCAGGCTACTTCCTGATTCGTGTCAGTGAGAGCAGAATAGGATACACCCTGTCCTACAGaGCTAAGGATGTCTGCAGACACTTTATGATCAACATGCTTCCAGGTAACCAGTGTGAGATTGTAGGTGAGAATCAGCGTCATTGCTCTCTCCATGATCTGGTAGACTTCCACCACAGAACTCCTATTCGTCCCTACACTGAGCTGCTCACGGTGGCCTGCGATCAGGCTGGCCAAAATATCTCAGAAGACAAGCCTCCTGCCCTGCCAGCACGCCGTAGGGTGTCTCATCCCCCAATTCCAAACCAGAGCACCTCATCAGACATTTCAATGAGCCCACTAAGGCTCTATCCCAGCCTAGAGCAGGAGCTTAGTGCTCTCAACTTGGACAGTGGGAGATATCCTTTAAAACCTGCATCACAGCCCACACCAAAATTCATCCCCACGCCGTCAGAGATTACCACCAGATGGCAGTCTGCACAGACTGAAACCACCACTGGAGGAGCGCAATCTACAGGTTTACCAACAGCTTGCAACCAGAAAATACCTGAAGACAAAGTACCTCAAAAGAGTAAGGTGCAGTCGAAGCACAATCGCATAAACCTGATTCAATGCAGGAAGATcttcaagaagaagaagaaccatTCGGAGGAGCACACGTACATGGAAATCAATGAAGCTAAAGTCACAACTGAACCTGCAGCATTGCAGATAGCTTCAAACATGGACCACCAAGAGGTGGATGGTGTTTCTGGTACATTACCACTGGAATACCTAAATCCACCTCCGTTTGCTCCTGGCTACTGAAACATGAGTTTCAAAAGACCAAATTAATACCAAATTTAAAAGAAGTTTAAGGTTTCATCACAGACATTTCTGTAGAATtgactatattttattgttttgccACACTCCCAGAATGCTGTATACATCTGCAATAATTTTCATTCACactgttgttgaattctcaattctgattggtcagaaggtgtttaatcttctataacagcacctctgacaactggaaattacaggtttatattaatgccctttttctaacacattattgtttctatagtaacaacttacacagggacactTGTATAGTGGATGGTCCATGGATTCTATGTCTAATAGTAAAAGGATTACAATTAtgttgtacatttatttttttatttaacaaagaaaaatggataatggttgatatggtgaagttttctgtatggaca

Function

GO: NA

KEGG:

id description
K23699 HSH2D; hematopoietic SH2 domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213678 lncRNA upstream 237094 12850960 ~ 12851179 (+) True G180534
TU213659 lncRNA upstream 246991 12836868 ~ 12841282 (+) True G180516
TU213315 lncRNA upstream 405710 12654422 ~ 12682563 (+) True G180268
TU213314 lncRNA upstream 434058 12653796 ~ 12654215 (+) True G180267
TU213271 lncRNA upstream 526492 12543667 ~ 12561781 (+) True cdc14ab
TU213871 lncRNA downstream 41174 13136137 ~ 13203148 (+) True G180695
TU213916 lncRNA downstream 106908 13201871 ~ 13285070 (+) True G180738
TU213946 lncRNA downstream 141514 13236477 ~ 13239583 (+) False aqp12
TU214029 lncRNA downstream 204317 13299280 ~ 13302297 (+) True G180833
TU214035 lncRNA downstream 306924 13401887 ~ 13406255 (+) True G180838
XM_026930431.2 mRNA upstream 2342 13065988 ~ 13085931 (+) True tpm4a
XM_026930434.2 mRNA upstream 2342 13071766 ~ 13085931 (+) False tpm4a
XM_026930430.2 mRNA upstream 3207 13065989 ~ 13085066 (+) False tpm4a
XM_026930432.2 mRNA upstream 3207 13071767 ~ 13085066 (+) False tpm4a
XM_026930798.2 mRNA upstream 64048 12992264 ~ 13024225 (+) True si:ch1073-396h14.1
XM_034308898.1 mRNA downstream 1749 13096712 ~ 13111706 (+) True ankmy1
XM_026930329.2 mRNA downstream 142035 13236998 ~ 13239637 (+) True aqp12
XM_034308887.1 mRNA downstream 182995 13277958 ~ 13280512 (+) True LOC117598427
XM_026927676.2 mRNA downstream 213478 13308441 ~ 13313447 (+) False cep19
XM_026927683.2 mRNA downstream 213708 13308671 ~ 13313447 (+) True cep19
TU213294 other upstream 486209 12573193 ~ 12602064 (+) False LOC117598398
trnag-ucc_15 other upstream 700032 12388170 ~ 12388241 (+) True trnag-ucc_15
TU213163 other upstream 754642 12328066 ~ 12333631 (+) False timm13
TU213106 other upstream 1032524 12054958 ~ 12055749 (+) True G180121
TU212683 other upstream 1658934 11428613 ~ 11429339 (+) False G179758
TU213850 other downstream 1410 13096373 ~ 13098156 (+) False ankmy1
trnag-gcc_9 other downstream 155407 13250370 ~ 13250441 (+) True trnag-gcc_9
trnag-gcc_10 other downstream 161094 13256057 ~ 13256124 (+) True trnag-gcc_10
trnag-gcc_11 other downstream 163045 13258008 ~ 13258076 (+) True trnag-gcc_11
trnag-gcc_12 other downstream 168861 13263824 ~ 13263894 (+) True trnag-gcc_12

Expression Profile