RNA id: XM_026930743.2


Basic Information

Item Value
RNA id XM_026930743.2
length 2139
RNA type mRNA
GC content 0.50
exon number 1
gene id rxfp3.3a2
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5308021 ~ 5310159 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tagaaagaaagaaagaaagaaagaaagaaaaaaagatccGTAAGATGTATGATCGGTGAATTACGCAGCAATGGAAGGTGCGGGCTTGCACAAGGCACCCGCGCTTTTCTCCGAGAGCATGGTGGAGATTTTGAACCTCAGCGGCTGGGCGACACCGAACAAGAGTGTAACACACCTGCACAGGTTCAGCAGTCTGGAGGACATCGACCTGAGCGCAGACGGAAGTCTTATCCTGAGGGTCATCATTTCGTCGGTTTACGCAGCGGTGTGCGCTGTGGGTCTGGTCGGCAACGTGCTGGTGTTCTTCCTGATGAAGACGAAGCtggggaagaggaggaggaagagatcCGCGATCAACTTTTTCGTCGTCAACTTGGCCGTGACCGACTTCCAGTTCGTGCTCACGCTGCCGTTCTGGGCTGCGGACGCGGCGCTGGATTTCAGCTGGCCCTTCGGTAACGCCATGTGCAAGATCGTGCTGTCGGTCACCGTGATGAACATGTACGCCAGCGTGTTCTTCCTCACGGCCATGAGCGTGAGTCGGTACTGGTCGGTGGCGTGCTGCGTGAGAGGCAGCGGCGCGCGCCGCAGGTTCACCTCGGTCAAGCGCGTGTGCGCGGCGCTCTGGGTTCTCGCCAGCGTCGCCACGGCGCCCACGTCCGCCTTCTCCACGGTGACGGTGGTAGCCGGTGAGAGGCTGTGCCTCCTCCGCTTTCCCGACGGCCACCGCTGGCTCGCGCTCTATCACCTCCAGAAGGTCGTGCTCGCCTTCATCTTGCCCATGATCACGCTGTCCATCTGCAACGCGCTGCTTCTGCGCTTCGTGCGCCGCAGGATCGTCGCGAACGGCAACCGCCCGAGGAGACGGTCTAAAGTCACCAAATCCGTGATCGTCGTGGTCCTGTCGTTCTTCATCTGCTGGATGCCGAATCACGCCATCACGCTTTGGGGAGTGCTGGTGAAATTTAACGCGGTGCGCTGGGACAAGACGTACTACATGGTGCACACCTACGTGTTCCCGCTGACTGTTTGCCTCGCTCATGCGAACAGCTGTTTAAACCCGGTGTTGTATTGCTTAATGCGAAGGGAGTTCAGGAAGATGCTGAGGAACCTGTTCTGGAGAGTTTCCTCGCCTGCTGTCACGAAAGCGCGCGGCTCTGGAGGTGCCGTGCACCGACAATCCGTTTAAATGGGATTTGACTGGGATGAGACTGTGCGAAATGTCTCATCAGCTCCAAAACTGCTGTTCGTATGAATAACGCAGACTTGGAGAGATTATAACAGCTGAGCAGGTGGTGCGCAAAAGAGATCCTTATCCATGGGAAAAcgcagtggttttttttttcagcgacTTCAACAAGAATGAGcagaattaaatttaaatttaattttattgaataatttaatttttcctTAATAATTGACTTTAACATAGTGAACTGATCAACCCATATAAATGCACTCACGCATCATCACTCTTATTTGACATGtaaatacaagaaaaaatagtaaatatgttttatatcaCTGGTTTCATGTTTCAGAGGACTAAAatgaaaacgtgtgtgtgtgtgtgaggaagagagacagagacatggcatgtataaacatttgtttgCAAACACGCATGTGCAGTGTCAAATGGATAGCACAGGATGCCACTTTGACCAAACCTCTCCAAAGCCAATGCAGTATTGACATTACGTGACcttaaaaagaataaatcagGCAGTCTGCAAATCCAGTAGGTTGTGTCACCTCAGAGTATGCTCATGCTCCATCTTTGAGACCCAAGCTACAAAAACTGCAAATATGGAATCTTTGATTttgttattattcatttttatctgaccaagacatttatttaaaaaaaaaaaaagagcagtgtAGAGttttgtatgtgtctgtgtggttttccttcaggttctccggGTCCCTCCCCCAAAGGCATATTCCAGTACAGATGGATTGGCTAAactaaattgccccaaggtgtgaatgagtgtgtgaatgtgtgtgcatggtgccctgcggtGGACTACCATCCCACCTgggatgtattcctgcctcgcacCCAGGATACGCCATGActctaaccaggataaagtgactACTGAAAGTGAAGGAATGAACTGTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208361 lncRNA upstream 347495 4912078 ~ 4960526 (+) False G176056
TU208360 lncRNA upstream 385967 4916775 ~ 4922054 (+) False G176056
TU208359 lncRNA upstream 385967 4919768 ~ 4922054 (+) True G176056
TU208344 lncRNA upstream 414664 4893142 ~ 4893357 (+) True G176041
TU208292 lncRNA upstream 447078 4787742 ~ 4860943 (+) True G175999
TU208784 lncRNA downstream 110728 5420887 ~ 5424095 (+) True G176384
TU208802 lncRNA downstream 161653 5471812 ~ 5568100 (+) True G176401
TU208808 lncRNA downstream 195611 5505770 ~ 5509854 (+) True G176406
TU208838 lncRNA downstream 292497 5602656 ~ 5614328 (+) True G176430
TU208878 lncRNA downstream 367047 5677206 ~ 5690860 (+) True G176469
XM_026930338.2 mRNA upstream 272616 5033239 ~ 5035405 (+) True senp8
XM_026930739.2 mRNA upstream 571617 4730499 ~ 4736404 (+) True rps17
XM_026930608.2 mRNA upstream 582271 4692533 ~ 4725750 (+) True csnk1g1
XM_026930609.2 mRNA upstream 582271 4692533 ~ 4725750 (+) False csnk1g1
XM_026930359.2 mRNA upstream 656929 4647397 ~ 4651092 (+) True fadd
XM_026930920.2 mRNA downstream 4308 5314467 ~ 5355290 (+) True drd4b
XM_034308471.1 mRNA downstream 32643 5342802 ~ 5355290 (+) False drd4b
XM_026930350.2 mRNA downstream 56702 5366861 ~ 5377891 (+) True LOC113536448
XM_026930282.2 mRNA downstream 69752 5379911 ~ 5388579 (+) True si:ch211-146m13.3
XM_026930289.2 mRNA downstream 83858 5394017 ~ 5398901 (+) True LOC113536403
TU208265 other upstream 646885 4656605 ~ 4661136 (+) True G175977
XR_004579071.1 other upstream 1010774 4281244 ~ 4297247 (+) False nadsyn1
TU207714 other upstream 1649745 3647370 ~ 3658276 (+) False btbd10b
TU206600 other upstream 3229394 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 3247738 2058970 ~ 2060283 (+) True G174536
XR_003403680.2 other downstream 1812226 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 1957725 7267884 ~ 7271320 (+) False rpl37a
trnae-cuc_24 other downstream 2292067 7602226 ~ 7602297 (+) True trnae-cuc_24
trnar-ucg_6 other downstream 2933263 8243422 ~ 8243494 (+) False trnar-ucg_6
trnar-acg_6 other downstream 2934793 8244952 ~ 8245024 (+) True trnar-acg_6

Expression Profile