RNA id: XM_026930763.2


Basic Information

Item Value
RNA id XM_026930763.2
length 2892
RNA type mRNA
GC content 0.49
exon number 1
gene id LOC113536666
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12587473 ~ 12590364 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCTCTCACTCAGTCGCGTGCGCTACAAAACAGAGGATAGAGGGAGGATGGTGAGAGGaagcgcgcgcgcgcacacacacacacacacacacacgtacaaaaCCGCGGCTGCAGCATCAGCACCAGGGAAGACGAATAGAGCGATAGAGCGATAGAGCGATGCACGCGCACTCCCTTCCCTTCGTTCGGACAGTGagcggtgatgtgatgtgaacgTGAGGCTCGTGAGCGGTCATGCAGAACAGCACGGCGGTTCGGTGCGACACCGGAGCCGCGGAGCGCATCTCCATCGCCGCTCTGTTCTCCTTCATGTGCGCTCTCGGCACTGTCCTCAACCTGTTGGTCATCGGTCTGGTGTTGAGCTTCAAGAAGCTGCGCACAGCGAGCAACGCCTTCATCGTGAACGGCTGCGCGGCCGACTTGCTCGTGTGCGCCTTGTGGATGCCGCGCGAGGCGGCTGTGGCGGCGTCAGTGCCTTCCCCGCTCTACGGCGCCGCCCCCCGGGACGCGCTGCTTTTCCTCGGCGCCACCGTATCGCTCCTGTCGCACTCGCTCATCGCCGTGAACCGCTACGTGCTGATCACGAAGCCGCCCGCCGCCTACCACGCGCTCTACCAGCGGAGGCGCGCGCAGGCCATGATCGCCGCGTCGTGGCTCGTCGCGTTCGCGTGCCTGCTGCCGCCATGGCTCGCGGTGGCTCGTCACCCGGCATTCGCGTGCGGACtgatgctgctgatgctgctCTCCGAGCCCTGGGCCGCCGCCACGCTCGCGCTCACCATTCTCGGCCAGACCGCGGTTGTGACGTACTGCTACTTCAAGATCTTCCGGCGCGTGCAGATCAGCGCTAAGCGCGTGAGCGTGCTGCACTTCCAACTCGTCAACCACCTGCCGTACTCGTTCCCGAGAAAGGACAAACGGCTCGGCGTGCACGTGCTGACCGTGTGCCTGGTGTTCGTGTTGACCACCGAGCCCGTGCTGTGGACCCTGACCGCGGGCCTGTTCGCTCCCGTACCGGCGGCGTTCCGCACGTGCGCCTGGCTCCTCTTCTGCTCCGTCTTCGTGTCCGACCCGTTCCTGTACACGTGGAAGAACGAGGAGTTCAGAAAGGCTTTCAGGTCCGTCCTGAGACGGGACTTCTGGCGAGGCTCCACCGTGGCCGCTGAGCCCGTTACCGTCAGCACCGTTTCTCACGTTTTCCCCCGACAGAACAGCCGCAGGGCGTTTTTAGCAGAGCTGAGCTAAGAGgtgttttaaataatgcagCATTTAACGCGCCCTCGCTGACTTTCTCTTACAGTGTCCCCCGGTCCGGATCCCTGCTCCAAATATCACCctccccccccttttttttaatctttaaactttttttttttttttaacaatctcAGAAATCTCGTACTAAACTGGGCCTTTGCTTGACACTATGGTGGCCCCACCAAGTGTACATCTTTTCTAATGTAGCATATATTaacaaaatgatttaaggtgCATAAATGGATGAAATCAGATATAAGGAAAGGGACACTTTACACTCGAATAGTGCAGTTTAAATGAAGCTTATTCACATTCACTACATTCACATTGCAGATCTCAGCTCCATTCCCATTTACTGTTCACATCCTAGctttagttttaataaaatggagGCAACTCTAACAACTGATCACCtcatattgtttataaagtTGATGTGTGTTAGAAACTGCGAATTTAAAAGAGTGGAAATCGCATTGACGGATCTGTATCAGATTTTAATGCCACATTTACACTGTCATGCCTCATATATACACTACccttccttgtcactggggtggtagcCTCATCTTTTGTAGATGATATGTAgatatagtgtacctttttaaaatgattacataAATGGACTGTAATTAGTTTTTAGTGTGAAGTTAAAAGGTAACAGATACATGCTAAAGGTACAGGTAAAGGTGTAAGcttgagggtaccaccccagaCAAATAAAAGTATGGTTTAGTACCTTTCTTCTGACAATGTAAAATTCAGTATATTGTTGCTGTTCACACTAATAAAGAAGTCACCTCAGAGGAACATTGATAAAGTCAACTGTAGACCTCAAGAGCCAAAGTTACCCAGGCATTGCGACTGACAAAcctttttagaaaaagaaaaaaaaaaaacctttctttttaaaataaaaaataaatggaagtaaatacttaaaatatatttttaaatgtagcatTTGCTTTGCTCCTTTGAAATTTTGTGTTATGTCCCCAACTACTTCATCTACAGGCTTCATGACAGCACAAACACATAacttagcatgctagctagttaCTGATATGACCCTAACTCTAATTAGTTTCCTAATTAGGTTTGCAGATAGCATTCAAATGAGCAAGAAAACACACTCCgctacacacactgcttcacaCTCTTGTCCTTGTGCTGCAAGTGGCTATCTGATACACATCAGCTACACAATTTCACGTTTTTCCTATTCTCCCAAACCTGATCCAGCTCTCTGGCTCATTACGAAGCCCTCAGGAGTGgagctgaaacacactgatggaggttgtacacactcctgagttgTGAGAGAAAGGTGGTGAGGGCGTGTTAATAATGGTATTGAAACACAGCCATGGAGGGAGGGTCTGCAGAGTTTATCCTTCTACCTCATTACTCAGAAacaggaaagtgttttttttattattctggacattttacagtgaataaaatgatttgtgtgtgtgttttttggtaAAATGGAACACTTGTGAAGTAATACACAGCtcagaaacaaaacacttgACTTGAAACAAGACGGCAACATtgaattttaagaaatatttgaaTATCCTGCTGATGCTGATCTTTAAATAATGAGGTATGTTTAAGTCTGATCTC

Function

GO: NA

KEGG:

id description
K08422 GPR88; G protein-coupled receptor 88

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213271 lncRNA upstream 25692 12543667 ~ 12561781 (+) True cdc14ab
TU213262 lncRNA upstream 89822 12496731 ~ 12497651 (+) True G180246
TU213255 lncRNA upstream 100729 12486506 ~ 12486744 (+) True G180242
TU213207 lncRNA upstream 164321 12422702 ~ 12423152 (+) True G180205
TU213194 lncRNA upstream 193982 12392887 ~ 12393491 (+) True G180192
TU213314 lncRNA downstream 63432 12653796 ~ 12654215 (+) True G180267
TU213315 lncRNA downstream 64058 12654422 ~ 12682563 (+) True G180268
TU213659 lncRNA downstream 246504 12836868 ~ 12841282 (+) True G180516
TU213678 lncRNA downstream 260596 12850960 ~ 12851179 (+) True G180534
TU213871 lncRNA downstream 545773 13136137 ~ 13203148 (+) True G180695
XM_034308475.1 mRNA upstream 5310 12573157 ~ 12582163 (+) True LOC117598398
XM_034308476.1 mRNA upstream 5310 12573157 ~ 12582163 (+) False LOC117598398
XM_034308860.1 mRNA upstream 20872 12565218 ~ 12566601 (+) True LOC117598419
XM_026930427.2 mRNA upstream 28370 12512888 ~ 12559103 (+) False cdc14ab
XM_026930429.2 mRNA upstream 28370 12512888 ~ 12559103 (+) False cdc14ab
XM_034308897.1 mRNA downstream 11967 12602331 ~ 12605805 (+) True LOC117598432
XM_034308473.1 mRNA downstream 24710 12615074 ~ 12623948 (+) False vcam1b
XM_034308474.1 mRNA downstream 24710 12615074 ~ 12623948 (+) False vcam1b
XM_034308472.1 mRNA downstream 24711 12615075 ~ 12623948 (+) True vcam1b
XM_034308640.1 mRNA downstream 54822 12645186 ~ 12666010 (+) True slc30a7
trnag-ucc_15 other upstream 199232 12388170 ~ 12388241 (+) True trnag-ucc_15
TU213163 other upstream 253842 12328066 ~ 12333631 (+) False timm13
TU213106 other upstream 531724 12054958 ~ 12055749 (+) True G180121
TU212683 other upstream 1158134 11428613 ~ 11429339 (+) False G179758
XR_003403710.1 other upstream 1169230 11418114 ~ 11418243 (+) True LOC113536800
TU213850 other downstream 506009 13096373 ~ 13098156 (+) False ankmy1
trnag-gcc_9 other downstream 660006 13250370 ~ 13250441 (+) True trnag-gcc_9
trnag-gcc_10 other downstream 665693 13256057 ~ 13256124 (+) True trnag-gcc_10
trnag-gcc_11 other downstream 667644 13258008 ~ 13258076 (+) True trnag-gcc_11
trnag-gcc_12 other downstream 673460 13263824 ~ 13263894 (+) True trnag-gcc_12

Expression Profile