RNA id: XM_034308868.1


Basic Information

Item Value
RNA id XM_034308868.1
length 3472
RNA type mRNA
GC content 0.44
exon number 25
gene id LOC113536667
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11113644 ~ 11160226 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTGCACACACGTGTGTTTAACATTTCTCTTGAACGCTCATGTTCGTccttttgtaattattattttattttagttgtaTTTTACAGATAAGTCACTCACTACTAAACAAATTCCAACATGTTTACGACACTTTAGTCTAACATACGGCCGTTTCCTTGCGTTGCTAGGTGTATTCGCTAAGCGTCTTGCTTGTGGTTACTATGGCTACCAGCCTCAAACTAGTCCGTTAGCTGCGCTGCTAGCTCGCCTGAGAACTTATCTTAGCGTCTGATAAATTTGCGTTTTCTTTTCACAGACGTTATTCCCCGTTTTTCGTGTGTTTTGAGTTATTTTAGACCCGCGGACAGAAATGTGTCGCGACAGTTTTCTCCCCGCAAACGAGCTGTGTGAATGAGATTGTGGATACATGAGTTCCAGAAGCTCTACAGAGATGGGGGACGTCTTGGCGAATGAAGCCGATCTCCTACTGATGATCAGAGAATACCTGAAGTTCTGTGAGCTGGAGGAAACAGTGAAGATCTTTGAGAAGGAATGCAAGAGCAAAGGAAAACCTGTGCCAAAAATACGCAGCAGTTTAACTGAAGACTCCAAAACGTTAACCATACAGAAAGATCTGCTCAGCTCGTTTGATGATGGAGAGATGAAGGTTTTCTTCGAGCTGTGGACAGAAAACGTGCCTGCACATGTCAGTGACAGCGACCCTGGCATACAGAAACTGGAGTTCTACCTGCACATTCACTTTTCCATCTATCCACTGAAGAACTCTGTTGGAAAGCAGGATAAAGCTGAGTTTGATGAGCGGATCAGTCATTTTAAACACTTCTTGGAGACGAGAGGAGCAGCGCTGAGCCAAACCACTGAGTTCCTGCCATTTTACGCTCTGCCTTTCGTTCCCAATCCTGTAGCACATCCGTCCTTCAAGGAGCTCTTCCAGGACACCTGGACTcaagatttaagaaaaaagctTGAAAAAGCTTTGGTCTCGACCCTGAAAGCATCAGCTACACCGAGGCTGCTCGCGTTATACagagagagcacaaacaGCAACAGAGagcGCATGAAGCAGCTAGCTGAAGCAGAGAAGCAGGTTTCAGCATACATGAAGAAGTTCAGTAAGATCCAGGCTGATTATCACAACCTCATCAGCGTGACTGCTGAACTCGTGGACTCTCTTGAGGCTACCGTCAATGGGAAAATGatTTCTCCTGAGTATCTGcagagcgtgtgtgtgcgcctcTTCAGTGGACACATGAGCCAGAGTGTCGCTCAGAGCATTGATTTTACACGGCCTGGAACAggatATTACTCTATGACTCCTTATGATGATGGATATGCCTCGTCCATGTTACGAGCATCCATTGCAGCCCAAAGGAATAAAGACGTCCCACTGCTGCCCTCACTGGACTATGACAAGCTGAAGAGGGATCTGATCAGTGGATCGGACAGACTGAAAGCTCTGCTGCTGCAGGCCCTGCGctggAGGTTGACACGCTCAGTACAGGGTGAGCAGAGAGACACAGTTCTACAGGCCTTCATCAGTAACGACCTGTTAAACTGCTACACCACTAAACagAAATCTGTCGTTCACCTCATCAGATCGAAGAATGAGACAGTGAGGCAGTACACAGCTCGCCTCCTTAACACCTTCGCCTCCCTGTCTGAGGgtCGTGTGTATCTGTCTCAGTGTTCCTCTCTTCTAAAGCTGTTAGTTGAATGTTTGCAGTCAGAGAAGGACTCGGTGACCAGAGAGAAAGTGTTGGGGGCGCTGCAGAAACTCAGCCTCAGACGGGTCCATCAGTCGGCTCTGATCAGATTGGGTCTGATATCATGTTTGGTTGATGAACTGCAGGACTCGGACTCTTTATCAGATTACACAGTGGAGTACGCTGTAACTCTGCTGATGACCCTCTGTCTGCGCACTCAGGGAAAGAGAAAATGCGCAGAAAAAGCCAAACAAGTCCTGAAGGTTCTGACTGACCTGTTGGGACACGAAAACCACGAGatccGTTACTATGTAAATGGAGCTCTGTACAGCATCCTGAGTGTCCCGACATTACGACAAGAGGCCAAAGAAATGAGTTTAGAGGAAATCCTGCGCTGTTACATGAAGGAGGAAAATCCTGAACTGAACAGACAGATGGAGTTCATCATCAAACAGCTCAACTCAGAGGATACACCCAAAGATGAGTTGGAGTCAGgggatgaagaggaggatgaagaagatgaGGAGGATGTGATGGAGCCAGATCTGGATAAAGAGGAAGATCTCCAGCCTCAGCCTAAAGAGCTCTCTGGAGAACACTTACTGACTACAGAGTATCTGGGAATTATGACCAACATGGCGAAGGTGAAGAGATGGAGTGCACAAGCCTCTCAAAGCACAGATGAGCCTCTCAGGAGACCCATTAAACTGAACTCACACAGAAACTCCGTtgCTGCCCCTGACAGACTCGACTCCTCCTACAACTCTCGCCCAAGTACCAGTGACTCCATTCGCCGTACActggatTCTGTCTGGCGCTCTTCTCAGGAATCAGTAGGATCGGAGGTGAACACCCACTCACACAGGTGTGCAGtctaacaggaagtgaagagaAGCTCTGCTGATGGACATGCAGCTTCCTGTAACATCATTCCTTCATCTTATCAGGCCAAGATAGACGAGTACAGGAGGAACAAAGCTGCTGTTTGTGGTCTGCGTGCTGTTTCAGGTTGACTGAGCCGCTATGTAACCCAACACCACAATAACACCTTTATCATCAGCACCACAGACTCCGTCCCCTCACCTTCACTCTGCTCACTCCTCACACTGCGGCGCTTTACACGTCACCTCGtcactttaataaaagaaatacttCAACTAATGTGGAACTTTTTAAACCAGTTTGTTTAGGATCCAATGCTGTATATCTAATTTCTgtctggtttttattttatatttttttgcctcacagttgttgtttttttttttatcgtttATTGTATGTTGTACATTTTCACGCTTGTTAGATCAGCTACAGTATGTAATATTTCCCATTTTGTTCACATTATGCTGTTCAACATGGTCCAAAATAAAATGTCCGCAAACATCTGTGGACGTTTGAGTTCTGACCAAACTGCTATTTTCAAAATCAAGAACATTTCAGTTACACCTTCAGTTCATGTTCCTAATGCTAGAGGtgtttttaacattaaacagCATCTAATTCAGATGTTAATGACTTCAGTAATTCTGAGAATGAGTTCtgggtttgttcatgttaatgttataaataatattagttAGCGTTATTTATTAGGAGTCTTACTGTAAAATGACTAGCATTTCATCAACTATTATCCATTAAGccaacattttaaacaataattatttaagATTCTCATTATTTAAGACAGATCCATGGTTCAgtcatacagtcaggtccataaatattggaacatcaacacaattctaacatttttggctctat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212525 lncRNA upstream 43827 11069589 ~ 11069817 (+) True G179628
TU212457 lncRNA upstream 249794 10863649 ~ 10863850 (+) True G179572
TU212441 lncRNA upstream 262779 10830324 ~ 10850865 (+) False LOC113536516
TU212446 lncRNA upstream 304373 10809036 ~ 10809271 (+) True G179561
TU212443 lncRNA upstream 308333 10805105 ~ 10805311 (+) True G179558
TU212593 lncRNA downstream 2795 11163021 ~ 11163379 (+) True G179685
TU212604 lncRNA downstream 34610 11194836 ~ 11195687 (+) True G179696
TU212674 lncRNA downstream 240698 11400924 ~ 11401434 (+) True G179754
TU212671 lncRNA downstream 244133 11404359 ~ 11407414 (+) True G179753
TU212682 lncRNA downstream 268387 11428613 ~ 11430897 (+) True G179758
XM_026930494.2 mRNA upstream 262721 10810670 ~ 10850923 (+) True LOC113536516
XM_026930495.2 mRNA upstream 262721 10810670 ~ 10850923 (+) False LOC113536516
XM_026930894.2 mRNA upstream 439592 10650258 ~ 10674052 (+) True LOC113536756
XM_026930758.2 mRNA upstream 490480 10617812 ~ 10623164 (+) True tctex1d2
XM_034308893.1 mRNA upstream 534251 10565259 ~ 10579393 (+) True rubcn
XM_026930852.2 mRNA downstream 15871 11176097 ~ 11181854 (+) True b3gnt7
XM_034308527.1 mRNA downstream 200738 11360964 ~ 11379995 (+) True alpi.1
XM_026930287.2 mRNA downstream 224580 11384806 ~ 11392946 (+) True alpi.2
XM_026930646.2 mRNA downstream 234981 11395207 ~ 11402964 (+) False ppp1r2
XM_026930645.2 mRNA downstream 234982 11395208 ~ 11402963 (+) True ppp1r2
TU212529 other upstream 14833 11096153 ~ 11098811 (+) True G179632
TU210703 other upstream 2842895 8253421 ~ 8270749 (+) True LOC113536578
TU210704 other upstream 2842895 8255867 ~ 8270749 (+) False LOC113536578
trnar-ucg_8 other upstream 2865556 8248016 ~ 8248088 (+) True trnar-ucg_8
trnar-acg_6 other upstream 2868620 8244952 ~ 8245024 (+) True trnar-acg_6
TU212546 other downstream 120 11160346 ~ 11161125 (+) False G179643
TU212545 other downstream 160 11160386 ~ 11161597 (+) True G179643
TU212547 other downstream 160 11160386 ~ 11161217 (+) False G179643
XR_003403700.1 other downstream 251834 11412060 ~ 11412127 (+) True LOC113536790
XR_004579127.1 other downstream 252348 11412574 ~ 11412640 (+) True LOC117598448

Expression Profile