Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026930769.2 |
| length | 1145 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 9 |
| gene id | snrpa1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 8711155 ~ 8717829 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0030176 | integral component of endoplasmic reticulum membrane | cellular_component |
| GO:0008430 | selenium binding | molecular_function |
| id | description |
|---|---|
| K11092 | SNRPA1; U2 small nuclear ribonucleoprotein A' |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU210915 | lncRNA | upstream | 121600 | 8588820 ~ 8589555 (+) | True | G178192 |
| TU210887 | lncRNA | upstream | 166680 | 8544269 ~ 8544475 (+) | True | G178170 |
| XR_004579116.1 | lncRNA | upstream | 189033 | 8514358 ~ 8522122 (+) | False | LOC113536702 |
| TU210999 | lncRNA | downstream | 89776 | 8807605 ~ 8808944 (+) | True | G178260 |
| TU211134 | lncRNA | downstream | 265136 | 8982965 ~ 8984242 (+) | True | G178383 |
| TU211135 | lncRNA | downstream | 265722 | 8983551 ~ 8984242 (+) | False | G178383 |
| TU211320 | lncRNA | downstream | 487628 | 9205457 ~ 9205678 (+) | True | G178539 |
| TU211525 | lncRNA | downstream | 559776 | 9277605 ~ 9277816 (+) | True | G178740 |
| XM_026930802.2 | mRNA | upstream | 9590 | 8631823 ~ 8701565 (+) | True | pcsk6 |
| XM_026930615.2 | mRNA | upstream | 139987 | 8565280 ~ 8571168 (+) | True | spg21 |
| XM_026930787.2 | mRNA | upstream | 177016 | 8532235 ~ 8534139 (+) | True | kbtbd13 |
| XM_026930280.2 | mRNA | upstream | 223825 | 8480856 ~ 8487330 (+) | True | rlbp1a |
| XM_026930281.2 | mRNA | upstream | 233716 | 8472471 ~ 8477439 (+) | True | slc39a1 |
| XM_026930884.2 | mRNA | downstream | 698 | 8718527 ~ 8724082 (+) | True | selenos |
| XM_034308960.1 | mRNA | downstream | 9891 | 8727720 ~ 8782842 (+) | True | chsy1 |
| XM_026930618.2 | mRNA | downstream | 277547 | 8995376 ~ 9001851 (+) | True | lins1 |
| XM_034308738.1 | mRNA | downstream | 277547 | 8995376 ~ 9001851 (+) | False | lins1 |
| XM_034308952.1 | mRNA | downstream | 289540 | 9007369 ~ 9035454 (+) | False | cers3a |
| TU210703 | other | upstream | 440406 | 8253421 ~ 8270749 (+) | True | LOC113536578 |
| TU210704 | other | upstream | 440406 | 8255867 ~ 8270749 (+) | False | LOC113536578 |
| trnar-ucg_8 | other | upstream | 463067 | 8248016 ~ 8248088 (+) | True | trnar-ucg_8 |
| trnar-acg_6 | other | upstream | 466131 | 8244952 ~ 8245024 (+) | True | trnar-acg_6 |
| trnar-ucg_6 | other | upstream | 467661 | 8243422 ~ 8243494 (+) | False | trnar-ucg_6 |
| TU212529 | other | downstream | 2378324 | 11096153 ~ 11098811 (+) | True | G179632 |
| TU212546 | other | downstream | 2442517 | 11160346 ~ 11161125 (+) | False | G179643 |
| TU212545 | other | downstream | 2442557 | 11160386 ~ 11161597 (+) | True | G179643 |
| TU212547 | other | downstream | 2442557 | 11160386 ~ 11161217 (+) | False | G179643 |
| XR_003403700.1 | other | downstream | 2694231 | 11412060 ~ 11412127 (+) | True | LOC113536790 |
