RNA id: XM_026930770.2


Basic Information

Item Value
RNA id XM_026930770.2
length 2093
RNA type mRNA
GC content 0.42
exon number 11
gene id LOC113536672
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8307279 ~ 8312494 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTTTACACAAACTCCTGCTTGAAACGTATCCTGTTTTTGGATATCAGTTACAGTCACGATGGGAAACTGTTGCCAAACGATCTGGAACCATCCTAAAAACACAGATATCCGGCTCAGCCTGCCAgttgtttgctttgtttggCAAACTGCTATGATCATTCTCTTTGGAGTCTTTGTGCGTTATGATGAAGAGTCTGATGCTCACTGGTCTGAATATAAGAAGGAGCATAATATTACAAGTGATATCGAAAATGATTTCTACTACAGATATCCAAGTTTCCAAGATGTGCACGTCATGATCTTTGTGGGTTTTGGCTTCCTCATGACTTTTTTGAAGCGCTACAGCTTTGGTGGAGTGGGCTTCAACTTCCTTATTGCTTCATTTGGGCTGCAGTGGGCCCTGCTGATGCAAGGCTGGTTCCACTCGCTGGACCATACAGATGGCAAAATAAAGATCGGAGTAGAAAATATTATCAATGCTGACTTCTGTGTGGCGGGGTGCCTAATCGCATATGGAGCTTGTTTGGGAAAAGTCAGTCCTGTACAGCTGATGGTGTTAACTCTGTTCGGAATCACCTTATTTGCAGTAGAAGAGTACATCATCCTTGAAGTTTTGCATGTCAAAGATGCTGGTGGCTCCATGGTCATCCACACATTTGGAGGATATTATGGTCTGACAATATCGTGGGTGCTCTATCGACCACACTTAAACCAGAGCAAACGTCTCAATGGATCCGTTTACCACTCTGATGTCTTTGCTATGATTGGCTGTCTCTTCCTCTGGATGTACTGGCCCAGTTTCAACTCTGCCATTTCACCTCATGGAGATGGGCAACACCGAGCTGCCATCAACACATACCTGGCCCTGGCATCCAGCGTCCTCTCCACCTTCGCCATATCCAGCCTTTCTGCCAAGAAGGGCAAATTAGACATGGTTCATATCCAGAATGCCACCCTGGCTGGAGGTGTTGCGATGGGAACAGCAGCTGAATTTATGATCACACCCTATGGTTCACTTATTGTTGGCTTCCTCTGTGGGATCATCTCTACTTTTGGCTACCTAGTGTTAACTCCTTTCCTTGAGAAATACCTGAAGATCCAGGACACTTGTGGAATCCATAATTTACATGCTATGCCAGGTGTCCTTGGAGGAGTTGTAGGCGCCATTACAGCTGCCACTGCCACCGAGTCTGTCTATTCACATGAAGGATTGATCAACACATTTGGATTTACGGGTGAATTAGCAAAAAGGTCTCCACAAACACAGGGAGGCTATCAGGCTGCTGGTCTTTGTGTGGCTATCGCCTTTGGACTAGTCGGTGGAGCAATAGTGGGTTTTATCCTGAGACTGCCTTTATGGGGAGACCCAGCCGATGATAACTGCTTTGATGATGAAGTGTACTGGGAGCTACCCGAAGATGAAGAAAGTATCCCTCCAATCCTGGAATACAACAACCACTTTGCTAACAAGCAACCTGACACACGTATGTCGGAGTCCAACTTCTCCATAGAGCACAGCTAATCAGATTTGGAAAATTACGCAGAGATGATGCAGATGAGATCAGTGCTGAATGAAACCTATTGAATGAGGCCTTGGCAACCAGGAAATCTAAGATATAATAGCAATTAGCTTGATTTAATAGCCAAACTGAAACAAACCCAGTTTAATCTGAAAACCTATTAAAATTGCCAGGTGTCatatctgtaataataattgcttaattaactttttgctgtatgtatgtatgtatgtatgtatgtaggtatgtatgtatgcatgtatgaccacatacacacacttgaaaTACTATtgttgtaaaaaatatttttgatattggTCATTGACAAATGTAAGTTTTCCATGGAACAAGTAGCACATCTTGTTTAATGAACATATGTACAAAAGCTAGAGTTATCTTTTTCTGCTCTCCAGAATTTAATGGTTGAGGCTCATTTAATGCCCTTTTTGTGTGatatttattcagattttgcattttattgtattttcagtTTTGTGAACTTGACTGATTTAATGCCTTatgcatgcattattattatctgctgtcattaaacattttaatgaattaaaaa

Function

GO:

id name namespace
GO:0015696 ammonium transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG:

id description
K06580 SLC42A, RHAG, RHBG, RHCG, CD241; ammonium transporter Rh

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403692.2 lncRNA downstream 31919 8271107 ~ 8275360 (-) True LOC113536653
TU210491 lncRNA downstream 380221 7926293 ~ 7927058 (-) True G177807
TU210390 lncRNA downstream 552261 7707511 ~ 7755018 (-) True G177729
TU210396 lncRNA downstream 556473 7728913 ~ 7750806 (-) True G177733
TU210367 lncRNA downstream 630609 7675916 ~ 7676670 (-) False igf1rb
TU210754 lncRNA upstream 11125 8323619 ~ 8324164 (-) True G178057
TU210939 lncRNA upstream 209307 8521801 ~ 8522085 (-) True G178208
TU210961 lncRNA upstream 280692 8593186 ~ 8593405 (-) True G178227
TU211159 lncRNA upstream 398683 8711177 ~ 8712118 (-) True G178398
TU211259 lncRNA upstream 670724 8983218 ~ 8984148 (-) False asb7
XM_026930844.2 mRNA downstream 126628 8173261 ~ 8180651 (-) True mrpl46
XM_026930256.2 mRNA downstream 182494 7992004 ~ 8124785 (-) True ntrk3b
XM_034308426.1 mRNA downstream 183096 7992004 ~ 8124183 (-) False ntrk3b
XM_034308972.1 mRNA downstream 462253 7818236 ~ 7845026 (-) True sv2ba
XM_026930584.2 mRNA upstream 17594 8330088 ~ 8366987 (-) False fes
XM_026930585.2 mRNA upstream 17594 8330088 ~ 8366987 (-) True fes
XM_026930586.2 mRNA upstream 17594 8330088 ~ 8366986 (-) False fes
XM_026930322.2 mRNA upstream 61001 8373495 ~ 8451252 (-) True furina
XM_026930902.2 mRNA upstream 140510 8453004 ~ 8469432 (-) True LOC113536763
trnar-acg_8 other downstream 59517 8247690 ~ 8247762 (-) True trnar-acg_8
trnar-acg_7 other downstream 60504 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-ucg_7 other downstream 62558 8244649 ~ 8244721 (-) True trnar-ucg_7
trnar-acg_5 other downstream 64476 8242731 ~ 8242803 (-) True trnar-acg_5
trnar-acg_4 other downstream 65101 8242106 ~ 8242178 (-) True trnar-acg_4
trnae-uuc_3 other upstream 578133 8890627 ~ 8890698 (-) True trnae-uuc_3
TU211757 other upstream 1209922 9522416 ~ 9523330 (-) True G178942
TU211855 other upstream 1501398 9813892 ~ 9815225 (-) True G179035
TU212647 other upstream 2931481 11243975 ~ 11246305 (-) False nppc
TU212749 other upstream 3096598 11409092 ~ 11415440 (-) False G179803

Expression Profile