RNA id: XM_026930786.2


Basic Information

Item Value
RNA id XM_026930786.2
length 2218
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC113536680
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7009298 ~ 7011515 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACATGGCCACTCGGGTACGGAGTTACACAGCCTAGCATAACTCGTCTCATTTCTTTTGCACTGTCGTCGGACAAAGATACATTTCCAGGTTTGTGAAGACACTTGGGATTGTTCATAACCTTATGCTGATTTACTGGAGATTTTGAAAATTGCATGGAATGAACTGTATGGAAGAGCAGACACTATAGGAACCCGCTCACTACAGACCTTGGATCCTCTGAAGGAATTCATGTGGTAAATGTTCCATATGCTTCCGAATGATTTGAACTAAGACAGTCAATGTAGTGGATTGTGATGTAGTGAACTAAGGTCTGAATCAGCTACGATTAGAGGCAGAGCGCTCAGCCATTTTGAAGGGTTTTGTTTGTGACAGTTTGTGAGTCACGTACTCCAAAATAGAGACGGAAATACTTTACGTGCCCACGAGGAAGAGCTAGCACTCCGAGCATCTGGAGGGTGCAAGTTTTACAGAAACACCCACTAACAGCAACAGACAACAGGAagccagaggtcaccatcactgGAAGTGCCCACCATCACCTGGACAACCTGACATAACTTGTACATAGTGGTCTAAAATAATCAAAGTCACAACAGAGTTTGAAATCTACAGAATCCGAGTGGCAGCTGAGGAAAGAATAACTCCAGTATGAACCCCCAGGGTGGCCATTATTTAAACAAGACAGCTGTGCTGTCCCCTCTGGGTGCTGTCCGTTTAACTGAACTTGCTCTCGGCTGTACCGTGATCTCTTTAGTGGTTCACGTTGCGGGATACACTGCTGTCTATGGGATCTTCTGCATGGTATCGTGGAGCACTTGCTTTGCCCTCTCGGCAGCCATCTTCGCTCTGGACGTGACGCGTCTTCACTCATGTCTTCCTGTGTCCTGGGAGAACCTGACTGTGACCCTGGCAGCACTGTCTGCTCTGCTCTATCTCACAGCTTCCATTGTGTACCCAGTTTACTTTGTGCGCAATGAGTGCCCATATAATGATTGCGAGGTTAGAAATTTCCGGATAGCCGTAACTGTCTGTTCCTGGGCAGTGTTTGTGGCGTATATTGCTGAAGTTTCCCTGTCCCGGGCCAAACCAGCCCGAGCGGTCAGCTACATGTCCACTCCATCTGGCCTCCTGAAGGTGGTGCAGGCTTACGTCGGCTGTGCCATTTTCATCACTCTTGCTAATGGGAGTGAGTTCTGGCGTCACCCGGCAACCGTGTACTGTGTGGCAGTGTTCGTGTTTTGTTTTGCCCTGACAGCACTTGTGGTAGCACTGAGTGTGCTCGGACGCACAACCTTCCTGAGTCTGCCTCTCGACCGTTTTGTAGTGCTCTACACGTTTGCAGCAGTGCTGCTGTACGTGAGCGCTGCTGTGACCTGGCCCGTGTTCTGCTTCGACAGGAAGTACGGCACGCCACTCAGACCTCAGGGCTGTCCCGGGGGAAAGTGTGCATGGGACAGCCAGCTTGTTGTGACTGTGTTCTGCTTTCTCAACCTGGCGTTTTATATTGCAGATCTCTGCTGCTCCCAGAGAGCACGATTTGTTACACGGCAGCCACGTGTGTAACACCTACAATGTACTTGTAACCTTCCTATTTATTTCTGGATCCGAGACTGTGCCTCAAATCACCttcttatatatatttctactgTTCACACAGCAATATGAGCAAAGTACAGTAGAAGGACCATACATTTGTCTCGCAATGGACACTTTGTGCGCTGAGCTTTACATTAAATTGAAAAACTCTAGGATAGCAAACGCTTGCTTAAAGAAATATGTACatgaaaaatctattttaaacaaCTTTCCACTTCCACTTTACTTCCCCAAATGTAATCGATCAGCTAAGAGATGTCTGATAGCTGATACTTGCTTAATGGAGGTCCATATTTAAGCtacatcatttctttttttaaatatagactCTAGTAATAGAAGTGATCTAAGTAACAGAATTAGAAATAAAAGTTACAGATTAAACTATATTATGACATATTATCTGGTTGTCTAAGATGGCTGCCTCCACAATATTACAGAACCAGCTTGACAGTAAAGTTTTTCTAGATTACAGTAAGTCTCggggaaagagaaaaatattttttcactgAGCTATTTCTTTAAATCCGTTAGCTAATGCTGATGTAATGTAGCAGTCTGGTTTACATCCATGGTTCGCAACATGGGGCCCGGGATCCGCaagggtctgtgaagcatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209925 lncRNA downstream 149809 6858539 ~ 6859489 (-) False LOC113536608
TU209633 lncRNA downstream 270690 6738321 ~ 6738608 (-) True G177097
XR_004579067.1 lncRNA downstream 420002 6579004 ~ 6589296 (-) False LOC117598400
XR_004579068.1 lncRNA downstream 420002 6580360 ~ 6589296 (-) True LOC117598400
TU209513 lncRNA downstream 457716 6551325 ~ 6551582 (-) True G176991
TU209973 lncRNA upstream 47017 7058532 ~ 7059550 (-) True G177374
TU210004 lncRNA upstream 126114 7137629 ~ 7138904 (-) True G177404
XR_004579109.1 lncRNA upstream 144713 7156228 ~ 7157621 (-) True LOC117598441
TU210062 lncRNA upstream 256046 7267561 ~ 7271271 (-) True G177448
TU210074 lncRNA upstream 278370 7289885 ~ 7290092 (-) True G177455
XM_026930885.2 mRNA downstream 13730 6988303 ~ 6995568 (-) True pycr1b
XM_026930342.2 mRNA downstream 29822 6961636 ~ 6979476 (-) False mafgb
XM_026930343.2 mRNA downstream 30191 6961636 ~ 6979107 (-) True mafgb
XM_026930692.2 mRNA downstream 54554 6940768 ~ 6954744 (-) True si:ch73-100l22.3
XM_026930266.2 mRNA downstream 95980 6900248 ~ 6913318 (-) False mfn1b
XM_034308712.1 mRNA upstream 7290 7018805 ~ 7055924 (-) True aspscr1
XM_034308711.1 mRNA upstream 7290 7018805 ~ 7055685 (-) False aspscr1
XM_026930530.2 mRNA upstream 7290 7018805 ~ 7055481 (-) False aspscr1
XM_026930529.2 mRNA upstream 7290 7018805 ~ 7051383 (-) False aspscr1
XM_026930612.2 mRNA upstream 67985 7079500 ~ 7108209 (-) False tmc6b
TU209010 other downstream 1301033 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 1301033 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 1695044 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 1718704 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 1812480 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 469934 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 568919 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 568919 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 568919 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 568919 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile