RNA id: XM_034308983.1


Basic Information

Item Value
RNA id XM_034308983.1
length 2161
RNA type mRNA
GC content 0.42
exon number 11
gene id bco1
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3997063 ~ 4005076 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gatcTCAACTGTATGTGCATGGGAAAACCATTAACATTTATTCCATACTCAATCAAAACAAAAGATGACCTTGACCTGTCCATCATAATAAAGAGCTATGGAATGTGATAGAAACTTTGGACGGCTTGTACCTTCACACTGATAGTCTCCAGCTACAACATTCAATCAATTTGGGTATGAGATAAGGCAAGTCAGTCCTCTCTGGGTGTTAAATGTGACTAAGACTCTGAACTAGGGCAGAGTGCAATCTGAAGCAAAACATTTGCAGAGAATATATACAGCCTGTAAGCTGAGTCTAGTCTGACGACTAGAGGAATCCAGTCAGACGAGGAAGAGATGCAGTATGATTATGGAAAAAACAAGAAGGAGCACCCTGATCCTGTAAAAGCAGAAGTAAAAGGCTCTCTTCCCGAGTGGCTGCAGGGCACCCTTGTGCGAAATGGCCCAGGTCTCTTCTCATTTGGAGAGACTTCTTATAATCACTGGTTTGATGGAATGGCACTCTTGCACAGTTTCACAATCAAACATGGAGAGGTTACATACAGAAGCAAATATCTCAGAAGTGACACTTACAACAGCAACATGGAAGCCAATAGAATTGTCGTTTCAGAAATGGGGACCATGGCATATCCACATCCATCCAAAAACATGCTCACCAAAATGATCACCTTTATCAATCACACCATACCAGACTTCACGGACAACTGTGCTagtaacataataaaatatggaaatgaTTATTATGCCACTTCTGAAACTAATTATATTCGCAAAATTGACCCAGTGACCTTGGAGACTCAAGACAAGGTGGACTACAAGAAATACATTGCTGTAAACCTTGCTATATCTCACCCACACTATGATAAAGAAGGAAACAGCTACAACATGGGAACCTCAATTGCAGACAAGGGCAAGACAAAATTTGTGATATTTAAGGTCCCTGCAGTGGAACATGGCAAAACTGAAGCTGGATCTGGCTGGACTCCAGCCTTGAAGAATGCTGAGATCATGGCCACGGTTCCTTGCCACTCCCTCCTCACCCCGAGTTATTACCACAGCTTTGGCATGACGGAGAACTATTTCATCTTTATTGAGCAACCCTTAAAGCTGGACATTGTCAAAATGGCCACTGCTTACATGAGGGGGGTGAGCTGGGCCAGCTGCATGAAATTCCATCATGAGGATGTCCTAATTCACCTCATTGACCgacacacaaagaaagaagTTGATGTGAAATACTATACAGACACCATGTTGGTATACCATCACGTCAATGCTTTTGAAGAGGATGGACACGTGATAGTTGACGTCATCGCTTATGATGACTACAGCCTATATGACATGTTCTACCTGGACAAGCTGAAAGAACACCCTGCAAGCAATTCTAATGTTATGCCCAAGTACAAACGGTTTGTGCTGCCACTTAGTGACAAGTGTGCTGAGAAAGGAGAAAACCTGGTCAAGTTGAAATACACAACAGCGACTgctgtgaaagaaaaagaaggaaaactaCTCTGCCAGCCAGAGGTTATTAGCGAAGGCACTGAAGTTCCCAGAATCAATTACAACTACAATGGACAGAAGCACAGATATGCATATGTGACTGAGGCGAGGACTATATTAGCCACAAAGATTATCAAGTTGGATGTTGAAACAAAGCTGAAGGTTGAATGGAGCGCAGAGAACTGCTTGCCCACCGAGCCTGTGTTTGTTCCTAGACCTGGTGCGAATGAAGAGGATGATGGTGTAGTGCTAACTTCAGTCATAAACAGTAATCCCGGAGAGTCTGACTTTCTTCTGGTGCTTGATGGGAAGTCATTCCAAGAAATGGCACGGGCTAGCGTGAATGTGGAGCTGCACATAGACATGCATGGTTTCTTTATACCACAACATGATACTGAACCTCCACCTGCTGATGGCACAGCTACAGAATCTTCAACCCGCTGTTGAATATGTACTTTGGACTAGAATGTGATGgtttaactttaaaaatgactaaaatctTATGTGGGCatgttaaaaacatgacatgtaTCTATAAACTGTGATGTGTGCAAGTTTTTTTGGCATTATCAAAGACTCATGGCATTATTAAAGATAATAAGGTCACTTTGGATACAAGTATGTGCCAATAAATAAACGGGGCATTCCTAagctgaaa

Function

GO:

id name namespace
GO:0001754 eye photoreceptor cell differentiation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030902 hindbrain development biological_process
GO:0004497 monooxygenase activity molecular_function
GO:0008198 ferrous iron binding molecular_function
GO:0003834 beta-carotene 15,15'-monooxygenase activity molecular_function

KEGG:

id description
K00515 BCMO1, BCDO1; beta-carotene 15,15'-dioxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207893 lncRNA downstream 74122 3922313 ~ 3922941 (-) True G175676
TU207812 lncRNA downstream 177533 3792537 ~ 3819530 (-) True G175610
TU207813 lncRNA downstream 201138 3795679 ~ 3795925 (-) True G175611
TU207665 lncRNA downstream 415092 3549865 ~ 3581971 (-) True serf2
TU208008 lncRNA upstream 72625 4076144 ~ 4137879 (-) True G175767
TU208017 lncRNA upstream 80453 4083972 ~ 4086193 (-) True G175775
TU208115 lncRNA upstream 295458 4298977 ~ 4299868 (-) True G175854
TU208186 lncRNA upstream 495959 4499478 ~ 4504321 (-) False lto1
TU208239 lncRNA upstream 618609 4622128 ~ 4622987 (-) True G175963
XM_034308466.1 mRNA downstream 610 3992982 ~ 3996453 (-) False bola3
XM_034308467.1 mRNA downstream 610 3992982 ~ 3996453 (-) False bola3
XM_026930724.2 mRNA downstream 7467 3962830 ~ 3989596 (-) True vat1l
XM_034308850.1 mRNA downstream 37436 3954998 ~ 3959627 (-) False clec3a
XM_034308411.1 mRNA upstream 3889 4007408 ~ 4017932 (-) False bco1l
XM_026930869.2 mRNA upstream 3889 4007408 ~ 4017797 (-) False bco1l
XM_034308410.1 mRNA upstream 3889 4007408 ~ 4017796 (-) False bco1l
XM_034308413.1 mRNA upstream 3889 4007408 ~ 4017796 (-) False bco1l
XM_026930867.2 mRNA upstream 3889 4007408 ~ 4017794 (-) False bco1l
TU207939 other downstream 630 3992726 ~ 3996433 (-) True bola3
XR_003403696.2 other downstream 87172 3855191 ~ 3909891 (-) False mical2a
XR_004579078.1 other downstream 87174 3855191 ~ 3909889 (-) False mical2a
TU207666 other downstream 424801 3569341 ~ 3572262 (-) True G175497
XR_003403706.2 other downstream 695793 3301139 ~ 3301270 (-) True LOC113536796
XR_003403702.2 other upstream 45346 4048865 ~ 4049043 (-) True LOC113536792
XR_003403701.2 other upstream 49070 4052589 ~ 4052767 (-) True LOC113536791
XR_003403709.1 other upstream 91688 4095207 ~ 4095262 (-) True LOC113536799
XR_003403699.1 other upstream 93195 4096714 ~ 4096770 (-) True LOC113536789
XR_003403707.1 other upstream 96276 4099795 ~ 4099851 (-) True LOC113536797

Expression Profile