RNA id: XM_026930793.2


Basic Information

Item Value
RNA id XM_026930793.2
length 1440
RNA type mRNA
GC content 0.47
exon number 2
gene id cx36.7
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10482171 ~ 10483611 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCACTTCAGAAGAGAGCTATGAAAAAGAAGCTACTGTGTTTGagtttatataatattgttagctttaattaaaatgagCGATTGATTGGATGGGAGTTGGGGTCAAAGCACAGAATCAGGAGCCTCTGTGGAGCTGATGAGGGCTAAAGATTGTTGCTAAAGGAACTTAACTGAGGCTCTTGAGCTggtttgggatttgaactcacaactcTCCTGGGGTGTGAAAAAATCTGCTGTTATTACCAAATCATTTGAGCACTGGGACTCAGGGTGGCAATGACAGAGTGGACACTGCTGAAGCGGCTCCTTGATGCCGTGCATCAGCATTCGACCCTGATAGGCCGGATCTGGCTGACGGTGATGGCAATTTTTCGGTTGCTGGTGGTTGCCGTGGCGGCTGAAGACGTGTACGCTGATGAACGtaccatgtttgtgtgtgatacACTGCAGCCAGGCTGCTCTAATGTGTGCTACGATGCCTTTGCGCCCATCTCTCAGCCACGTTTCTGGGTCTTCCATATTGTCGCCGTGTCCACACCGTcacttttcttcattctctACACCTGGCACAACCTTTCCAAGATGGCACCTGGGCAAAACACGGACGAGTGTGTGCGGAACTGTAATTCTGAAAGCTGCTCCATGACGTCTCATCATCACCCGAGAGACAAGGTGGCTGATGTTCTGGAGAAAAACATGTGCGTTTCACTACCTCGCAGCACTCtcgtccaaaaacatgcctctCTGACAAGAGGTTCCTCAGGAGTCCTGTCCAAAGCCTACGTGCTCCATGTGTGTTTCCGTGCTGCATTGGAGCTGGCATTCCTTTCCCTTCAGTGGCTGCTTTTCGGATTCTACGTCCCGGCTCGTTTCATGTGTGCCGTCCCTCCTTGTCCTCAGCGAGTGGACTGCTACGTCTCACGTCCCACGGAGAAGAGCATCTTCCTCATTTTCATGTTCTGCGTGGGTGTCTTCTGCATCTTGCTAAACTTCCTGGAGCTCAATCACCTCGGCTGGAAGAAGATCAGAAGGTCAATGCAAGTAAAGGAAGGATGGAGGAGCAGTATTTATGGAGCAATAAATGAGAACGGACGCTCTGGGACGAGCAGTACAACGTCTCTGCCTACACTGGAGCTGCTGGTGGAGAATCAACCTGAGTGGACGTGTGCAGGAAATGAGTGCTGCCCACCATtaaaacaagagaaagaaaagtctGAAAAGTCActgcagaaagagagacacaatgCAACACAAGTGCTGAGAGGAAAAACACAATCACATAAAGGAAGAGTGTCCAAACGAAGTGCTGAAGTCTGGATATAAACTGAATCCTTCTTCACTTATCCATATACCTTTCTGATTTAGACCTTGCTTTTTGGTAAGTTTTAAAAGTGAttgaccttttcttttttttaaccataacaAAACATATACTGAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212048 lncRNA upstream 221563 10256766 ~ 10260608 (+) True G179212
TU211918 lncRNA upstream 408154 10073818 ~ 10074017 (+) True G179085
TU211639 lncRNA upstream 574725 9824446 ~ 9907446 (+) True G178839
TU211632 lncRNA upstream 699425 9782541 ~ 9782746 (+) True G178834
TU211608 lncRNA upstream 731458 9750445 ~ 9750713 (+) True G178817
TU212279 lncRNA downstream 3086 10486697 ~ 10491773 (+) True G179425
TU212280 lncRNA downstream 8422 10492033 ~ 10492469 (+) True G179426
TU212281 lncRNA downstream 13037 10496648 ~ 10497140 (+) True G179427
TU212282 lncRNA downstream 13877 10497488 ~ 10497712 (+) True G179428
XR_003403698.2 lncRNA downstream 299514 10783125 ~ 10784114 (+) True LOC113536738
XM_034308925.1 mRNA upstream 2848 10460121 ~ 10479323 (+) True lmnl3
XM_034308924.1 mRNA upstream 2848 10460121 ~ 10479323 (+) False lmnl3
XM_026930728.2 mRNA upstream 224593 10251725 ~ 10257578 (+) True saxo2
XM_026930479.2 mRNA upstream 659942 9792081 ~ 9822229 (+) False il16
XM_034308892.1 mRNA downstream 71674 10555285 ~ 10563493 (+) True LOC113536420
XM_034308893.1 mRNA downstream 81648 10565259 ~ 10579393 (+) True rubcn
XM_026930758.2 mRNA downstream 134201 10617812 ~ 10623164 (+) True tctex1d2
XM_026930894.2 mRNA downstream 166647 10650258 ~ 10674052 (+) True LOC113536756
XM_026930494.2 mRNA downstream 327059 10810670 ~ 10850923 (+) True LOC113536516
TU210703 other upstream 2211422 8253421 ~ 8270749 (+) True LOC113536578
TU210704 other upstream 2211422 8255867 ~ 8270749 (+) False LOC113536578
trnar-ucg_8 other upstream 2234083 8248016 ~ 8248088 (+) True trnar-ucg_8
trnar-acg_6 other upstream 2237147 8244952 ~ 8245024 (+) True trnar-acg_6
trnar-ucg_6 other upstream 2238677 8243422 ~ 8243494 (+) False trnar-ucg_6
TU212529 other downstream 612542 11096153 ~ 11098811 (+) True G179632
TU212546 other downstream 676735 11160346 ~ 11161125 (+) False G179643
TU212545 other downstream 676775 11160386 ~ 11161597 (+) True G179643
TU212547 other downstream 676775 11160386 ~ 11161217 (+) False G179643
XR_003403700.1 other downstream 928449 11412060 ~ 11412127 (+) True LOC113536790

Expression Profile