RNA id: XM_026930794.2


Basic Information

Item Value
RNA id XM_026930794.2
length 3681
RNA type mRNA
GC content 0.45
exon number 1
gene id tlnrd1
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9770774 ~ 9774454 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACACAATTTTATCGAGCTAAAGGCTACGCTAGGCTAAAACTTACCATAAACTATGCGTGGTCATGTGTGAACTGTAGCATAACGCTAAGTTTGGCTTGAATGGCCTGCTTCTTATCTAGAGTACAAATCAGTGGTGACCCTAAAGACTGGAGAAGTGGAATAACTGCAAaaacaaggaaggaagagagaagcTGGAGGAGCTAGCAGCACGTTTCGGGTGTAATTTTGCTCTTACGCCGGTAGTCGGGGCCTGGAGACATGATGGCTTTAGTGTGGAAATGAACCAACTTTACAACTGAAGACGAATTCTCATCACCCGAACGAGTGAGAAGTTTATCATTTGAAGGAAGCGTCAGAGGGAACGGAGTGGATATGGGattattttcagcacaaaagtttgttttttgtgtttttttctgggGATAATGGACGCTTattcaggagaaagaaaaaaaaccgtTGCAGTTTTGAAAGAAGCTCTCCCTCGCGCGCGCCGTGTTTCTGTTTCCCAACTGAAGCGCAGCCGCACCCTCTGACGAATTAGCCAACAAGCTAACGACTAATTTTCACACAGAACTCGCCTTTCTTGGACAAATACAGCTTCAttctagaaaaaaaacctaTTAATTTCGAAGAAAACCGCCTGTTATCCCTCAACGCCTTGTTTCCCATTTGAAGTAAAGCCGCACCCTCTAGTTTGCTTCCTCATACAGACGAAGAGAccccacacacatatataaagcTGGAATACACCTCATGTTGGTTCTCCTGAAACACCACTGGATGGtgatgggttaaaaaaaacaaaaaaaacaaacaggtttAAAACCAGATTTAAATGAGATGTGTACCAACAGGAAAGcccagcagcagtgtgtgtgccgGATGGTCCTGAGGTTCCCATGCTTTTTGCTGAGGAAGGTGCATGGGAGATAGCCAGTAATGCATAAGGGACCTGGGCTTCAGCAAGAACTGGCCAACATCACTGGGTTACGAGCGAAAAGGAAGAGGTTAAAAGCCGAGGGAAGTCAAACCCTGGTCTTTCGGTGGTTGAAAATCCAGCCTGGTGCTTTTTTTGGAGTCTTTTCTACAGTAGGCGTTGTGGGATGATGGTGCTGAAAGTGGAGGACCATCACAGAGAGCTTAATTCAAACTGCTGCTGTGTTACAGCCATGACCCTCAGAGGCACTTTCCACTGGAGGATCAAAATTAACAATGGCTCATCTGGTTTTAGTCATTTGATGGATTTCATTTGGCCTCCTGCAACCACGAGAAGGGCAAGGACCTATAAACGCCCGTCTGCTTGACatgaattaacaaaaataaaaaagctgacACAACTGTGGCAATAGATTCTTCACACCCTCAGATTCAGTATCGAAAGTGCTTTTGATGAGGTGTATGTTGGTCTTTGGATGTCTGGAATCAGCTGGCACTTTGACTTGATTTGATCTCTTGTATGGCACTGCAGCAAGTGTatggttttgtttctgttttgtttttttggtttttttgtctgtgtgtgtgtatatatatgtgtgttgttGGACCTAGATAGATGAAAAAACCGACCTGTGAAACTGTTCATATGTACCCATGATGTGATTGTGATGTGATGAGATGTGCACAATTAAGGTCAAATAACATAAACATTAAGGAGTTCAGCATCATTATATTGAAGGGATCTTTAAATGTAGCCTTGATTTTGACCTcattcagccttttttttatgTCACACTTATGCCAGAACACAGTTTCCCTGAGTGAAGTCGCATTATCCTctatttttctgattttgcaAATGTTTACTGAAATAATCTGATGTTCAAATAGTAAACAGTGGATATTAGTGTATTTTCTGAAGGACAACACTTTTGGGCCAGTTTCTCAGAGAAGGTGTGGTATTATTTCTGAAGACATTTTCATATAAGTTATGAGTTTGTACTGTGGAATGTGTGGtgtaatatattttgtacaaaaaagaaaatccagaatATTAGCTTGACCACCATACTATGGCTAGTAGTGGCTCGGGAAAGTCAGACAGCGAGGTTCCAACGTCCAACATCCCGAGTGGCAGCTTGCAGCAGCGGAAAAGACTCTCATCTGTTTGTGACACATGCAAAAGCAAGATGCAGCTGGTGGCGGATTTACTTCTGCTGTCCAGTGAGACCAGGCCGGTGATGACCGCGGATGGTGTGCCAGTGGCAGAGACTTTTGAGAAGTGTCGGGATACAGTGATTGCTAGGACGAAGGAGCTGTCCATCATCACTCACGACATTCAGAGCCAGCTCAACATGGGGAAATTTACGGAGGTCGGGGAGCGGTTAGTGGAAATGGGCAACCTGGTGGTGTCTCTAACGGAGTTTTCAGCTCACGCCGCATACCTGGCGGCGGTGGAGGCACCGGGTTCACATGCTGCCGTTCCGGGATTGGTGGATCGCTACAAAGTGACGCGATGCCGTCATGAGGTGGATCAAACTTGCTCTGTCCTGCGTGTAACCCCACTTTCTGATTTAACTCCCCAACTCCTCCTGGAAGTTTCCCAAAACATCCGGAGGAACCTGACCACTCTCACAGAGGCCTCGTCTCTGGCCAGTGAGAAATCCAAGGACAGGTTTGCCAAAGAGCAGTTCAAAGCCAGTGTAAAGTGCATGAGCACGAGCGCCACTGCGCTTCTCGCGTGTGTCAAGGAGGTGAAGACGAGCCCAAGCGAGCTGACGCGAAATCGCTGTGTGCTTTTCAGTGGGCCGCTGGTTCAGGCCGTCAACGCACTGGTGGGATTCGCCACTGAGCCCCAGTTCCTGGGCAAACCGGCTAATCTTAGCGCAGATGGTAAAGCGGTGCAGACGGCTGTACTGGGAGGCGCCATGAGTGTAGTTTCAGCTTGCGTCCTCCTCACACAGGGTCTCCGAGACGTATCCCAACATGCCGAGAACAGCGCCCAGATGCCTGCGTACCGCGAAAGGTTGCGCCAGTCAGCTTGCGCCGTCTCTGATGGATGCACATTGCTCTCACAGGCGCTCAGGGATCGATCCTCGCCCAGGACTCTACCACCGGTCAACTCGCATTCTGTGAATTAAAACAAAGCCcattacagatatttttttcaatGTACCAAAGAGACTAATATGCTTTAACCCCTTGTTGTGTGATCCTGTTGAGTGAATGTAGtgaatttgtacaaatttgtCTGTCCAACTATTCCTGTGCAACCAAggtggcagttttttttttgcactggatgtaataaaaaaaacctagcCGAAACTGACATCACAACATATTTCTAACTTGTGTTCACTCACTGGTAGCCACAGATGTTGTGGTGATTCTGTATGTTGGACTGAAAATTCtcaaattaaaagaaatctagtggaaagtttACCTCAGTTTTAGCCTCTGAGAGCAGCAGACAGAGTAACGGTTTAGTCGGATGTGTGATGGATGTTATTAATAAATGCAGTGAGAGTGGGATGCATGTTCCTGCTTTGTATTCCAGTGTATGAATCTTTTGGATGGATTAaagctgctgtgagtgtgtgccaTAGGTTTTACACTATTTACCAGAATTACAATagcattttatgttttattttatttttttttttttttttttctggatcaTGCATGTACTGGAGTATTTATTTCAACTTATTAAAAAGTTGGTTCTCATACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211608 lncRNA upstream 20061 9750445 ~ 9750713 (+) True G178817
TU211587 lncRNA upstream 130138 9634759 ~ 9640636 (+) True G178798
TU211578 lncRNA upstream 287854 9482335 ~ 9482920 (+) True G178789
TU211548 lncRNA upstream 437896 9320960 ~ 9332878 (+) True G178763
TU211550 lncRNA upstream 460591 9309317 ~ 9310183 (+) True G178764
TU211632 lncRNA downstream 8087 9782541 ~ 9782746 (+) True G178834
TU211639 lncRNA downstream 49992 9824446 ~ 9907446 (+) True G178839
TU211918 lncRNA downstream 299364 10073818 ~ 10074017 (+) True G179085
TU212048 lncRNA downstream 482312 10256766 ~ 10260608 (+) True G179212
TU212279 lncRNA downstream 712243 10486697 ~ 10491773 (+) True G179425
XM_026930312.2 mRNA upstream 16328 9625189 ~ 9754446 (+) True cemip
XM_026930761.2 mRNA upstream 180437 9546746 ~ 9590337 (+) True abhd17c
XM_026930422.2 mRNA upstream 241534 9418525 ~ 9529240 (+) True arnt2
XM_034308703.1 mRNA downstream 17626 9792080 ~ 9822229 (+) True il16
XM_034308705.1 mRNA downstream 17627 9792081 ~ 9822229 (+) False il16
XM_026930479.2 mRNA downstream 17627 9792081 ~ 9822229 (+) False il16
XM_026930481.2 mRNA downstream 17627 9792081 ~ 9822229 (+) False il16
XM_034308704.1 mRNA downstream 17629 9792083 ~ 9822229 (+) False il16
TU210703 other upstream 1500025 8253421 ~ 8270749 (+) True LOC113536578
TU210704 other upstream 1500025 8255867 ~ 8270749 (+) False LOC113536578
trnar-ucg_8 other upstream 1522686 8248016 ~ 8248088 (+) True trnar-ucg_8
trnar-acg_6 other upstream 1525750 8244952 ~ 8245024 (+) True trnar-acg_6
trnar-ucg_6 other upstream 1527280 8243422 ~ 8243494 (+) False trnar-ucg_6
TU212529 other downstream 1321699 11096153 ~ 11098811 (+) True G179632
TU212546 other downstream 1385892 11160346 ~ 11161125 (+) False G179643
TU212545 other downstream 1385932 11160386 ~ 11161597 (+) True G179643
TU212547 other downstream 1385932 11160386 ~ 11161217 (+) False G179643
XR_003403700.1 other downstream 1637606 11412060 ~ 11412127 (+) True LOC113536790

Expression Profile