RNA id: XM_026930828.2


Basic Information

Item Value
RNA id XM_026930828.2
length 3271
RNA type mRNA
GC content 0.43
exon number 13
gene id fah
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9350196 ~ 9378551 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGATCAGATCCTGGACCTGAGTGCCATTAAACACCTCTTCACCGGACCGGAAGTCTCTCAGCACCAGCATGTGTTTGATCAGCCACTCTGAATGGGTTCATGGCTCTGGGTTCAGGCGCATGGAGAGAGACTCGCACGTTCCTACAGACACTGCTGCGCGCGGACGAGCCGACACTGAGAGACAATCACGAGCTCAGGggcagAGCTTTTGTTGATCAGAGCGCTGCAGTGATGCATCTCCCAGCTGAGATCGgTGACTACACTGACTTCTACTCATCCAGAGACCATGCCACTAATGTCGGGATCATGTTCCGGGGCAAAGAGAACGCACTGATGCCAAACTGGCTGAGGCTGCCGGTTGGCTATCATGGCCGAGCTTCATCTGTGGTCATTTCAGGAACGCCAATCAGAAGACCTCAAGGCCAAATGAGACCAGACCcagCCAAGCCTCCCGTGTTCGGGCCATCAAAGCAGCTGGACATTGAGCTGGAAATGgcTTTCTTTGTGGGTCCAGGGAACAGGCAGGGAGAGCCGATTCCCATAGAGAAAGCACATGAACACATCTTCGGTATGGTGCTGATGAACGACTGGAGTGcaAGGGATATCCAGGCATGGGAGTATGTGCCATTAGGTCCGTTTCTGGGGAAAAATTTCGGGACCACCATCTCGCCCTGGGTCGTTCCTATGGAAGCGCTGATGCCGTTTGTGGAGCCTAACACAGTGCAGGACCCAGAGCCACTACCATACCTGAGCCACCAGGACCCATACACATTCAACATCAACCTCTTTGTCTCCATTAAAGGCGAAGGCATGAGTGAGGCAGCCACCATCTGCAAGTCTAACTTTAAGTACATGTACTGGACCATGAAGCAGCAGTTAGCGCATCACACAGTGAACGGCTGTAACATCAGACCAGGAGACCTGCTGGCATCGGGCACCATCAGCGGAccgGATCCTGAAAGTTTTGGCTCAATGTTGGAGCTCTCATGGAGAGGGTCAAAGGTCATTGAGCTGGGCGGAGGAGAGACGAGGACGTTCCTTAAGGACGGAGACGAGGTCACCCTCACAGGTTACTGTCAGGGTCGGGGATATCGTGTTGGTTTCGGATCATGCCAGGGGAAGATCATTCCTGCCCTACAGCAGTGATGTTCCCCATTCTTCTccttccatctatccatccatcccaaaACCAGCTGGACTCTTCACACACCAAATAATGCCTTATCAGTCATGTTTAATTATTCATGACCTTTTCAGTGACATTGAATGGAGTGCATACGAGCTGTTATTATTAGCTCATTGGAGTTTCACTTAGCCAAAGCTCTTCTGTGTGCAGAAAGGATTATGATTGATTATGTGTGACAGCCAGGGAAATTGAGAGGAGATTGAATTAAGCACattgatttttgtttaataataggAGCCTGTCCAGAAACATTCCACtggcttttttgtttaaatactcTAAAAATGATAGCAATATAGCAAGCTATTCATGTTGCTACTGATGTATGGCTTCTTAAAATTATGTATGTTAAATGTACTTTGGTTTATTACATGGAGGCAAATTCAGGAAGGTTCATATCCATGAGCCAGTGTCAAAATGAATTCAGTTTTGAGTCTGTTTGAGTGTTAACTCCACTAGCAGTGTCCTCCTGTCTCGTTAGTGCGCTAGACAATCGCTTACTTTTCACAGGAAtgcagcaccaaccaacaagtTAGCACTAGAATCACTAAGCAcgttatatataaacatatttaatgtgtttttttggaCTTTTGCTTTAAGTAGTTCAGTAAGTAGTTAATTAATGACTAACATAAGAGGTCAAAGAGTTAGCTATGGAAGACAGGAATGCAGTACAAGCCAGCTATGTAAACATTGAAACCATTgaactgtaaagaaaaaaacagtacatgCCAGCAGGCTTTGTCACTTCATACCATACTTTTAATTTTTCCTGCGATCAGTAGCACTGTACATTTCAGCAGGATGTGGTAGAAGCGAAAAGGTCAAGTTTTTTGGTTAATATCTGAGATCACAGCTATAGTCTGCCACCTCTCTATTTTCTTTAGTTTCATCATGTAACAATAATGACCCAGATAATAACACGCACAAACTGGCACGATGTGTGCAACAACCTCATTTGCTAATTGGGAAGATATCaacacagctttattttaatgatcATCTGCTTCTTTCCGCCATCCTCAGAgtataatgtgtgatttaaatCAGTCAGTGTTGTAAGACAGCACTCTGTCttggtgattatttatttaatctccaCACCTTCACCCCATGATAAGCAGATTCAGTTCAAGTTCTCTTGATGCAAATTTTCCCCATGATTAATCAACCAGATGGCAAAGAATTTCTACCATCTTGATcagctcagcctgtgttttggaAACGGGTAGCTAGTCAGactaagctggatttttcagcatgGCAGTAACACATGACTGAATACAATCAGCAACTGAATAAATATTCCAACTTCCACTACCTTGTGCACAGGTTGGCTAAACGTGCATGTTCTCACTGGTCATACCTTTTCTGCCTTTAGAAAAAGTTTGATTAAGTAAAACTCCTAAGCTTTTTAAAAACCTCTGGTGCATACGTTCTTTAAAGATTCACTTTTGCAAAGGCACTACTTATTTCTCAATGTGAAGTCTAATTACCAAAGGCAGTgttatgtttatttctgtttgtcacCCACAAATTTGGTAATTAAAGTTACTGATGTCTGTTAACTCCGCATGCGTGTGTTTAATCCATCAGCATGCACGGTGGAAAAGAGCTGTGTCATTTGATTAATTACCCTGTCTGCACTCTAAATTCACCTGCTGTGGTTTAATGACTTGTAATGATCTAGCAATCGCTGTTTCATCTCAGTGCTGGGCTGCATTTAAACACACCATAATCTCATTCCTCTCGTTACAACATCTATTACTGTGATTCACTTTCTGCTCTTACTGCCCAGATGTCATTCAGATTGGAAATCTTTCCTTTCTAAGGAATTAAAGAGAGTGGTGCTGGCTAGTATTAGCATGTTGGACATGCATATCATTATAGATCCCTATAGTTTGAAGACCCAGACATGGTCCACTTTGTCTATGCATCATTTTCCACCATTGTCCTTTTTAGTGTGCTACCAATGTCAACATATTGTATATGAAAATGAATTGGCTCCATTAGTCGATCATCTGAAGGTTGGGAAGGATTGTTTTTGGTGGCATACAGCAAATCACGGGTATCAACAAAgga

Function

GO:

id name namespace
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0004334 fumarylacetoacetase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211548 lncRNA upstream 17778 9320960 ~ 9332878 (+) True G178763
TU211550 lncRNA upstream 40473 9309317 ~ 9310183 (+) True G178764
TU211545 lncRNA upstream 49318 9300994 ~ 9301338 (+) True G178760
TU211546 lncRNA upstream 50999 9299386 ~ 9299657 (+) True G178761
TU211526 lncRNA upstream 72540 9277887 ~ 9278116 (+) True G178741
TU211578 lncRNA downstream 103784 9482335 ~ 9482920 (+) True G178789
TU211587 lncRNA downstream 256208 9634759 ~ 9640636 (+) True G178798
TU211608 lncRNA downstream 371894 9750445 ~ 9750713 (+) True G178817
TU211632 lncRNA downstream 403990 9782541 ~ 9782746 (+) True G178834
TU211639 lncRNA downstream 445895 9824446 ~ 9907446 (+) True G178839
XM_034308656.1 mRNA upstream 747 9336647 ~ 9349909 (+) False zfand6
XM_034308655.1 mRNA upstream 747 9336760 ~ 9349909 (+) False zfand6
XM_026930698.2 mRNA upstream 747 9337540 ~ 9349909 (+) True zfand6
XM_026930378.2 mRNA upstream 92659 9226447 ~ 9257997 (+) True minar1
XM_034308735.1 mRNA upstream 160737 9039211 ~ 9189919 (+) False adamts17
XM_026930422.2 mRNA downstream 39974 9418525 ~ 9529240 (+) True arnt2
XM_026930424.2 mRNA downstream 39974 9418525 ~ 9529240 (+) False arnt2
XM_026930425.2 mRNA downstream 39974 9418525 ~ 9529240 (+) False arnt2
XM_026930426.2 mRNA downstream 39974 9418525 ~ 9529240 (+) False arnt2
XM_026930761.2 mRNA downstream 168195 9546746 ~ 9590337 (+) True abhd17c
TU210703 other upstream 1079907 8253421 ~ 8270749 (+) True LOC113536578
TU210704 other upstream 1079907 8255867 ~ 8270749 (+) False LOC113536578
trnar-ucg_8 other upstream 1102568 8248016 ~ 8248088 (+) True trnar-ucg_8
trnar-acg_6 other upstream 1105632 8244952 ~ 8245024 (+) True trnar-acg_6
trnar-ucg_6 other upstream 1107162 8243422 ~ 8243494 (+) False trnar-ucg_6
TU212529 other downstream 1717602 11096153 ~ 11098811 (+) True G179632
TU212546 other downstream 1781795 11160346 ~ 11161125 (+) False G179643
TU212545 other downstream 1781835 11160386 ~ 11161597 (+) True G179643
TU212547 other downstream 1781835 11160386 ~ 11161217 (+) False G179643
XR_003403700.1 other downstream 2033509 11412060 ~ 11412127 (+) True LOC113536790

Expression Profile