RNA id: XM_026930844.2


Basic Information

Item Value
RNA id XM_026930844.2
length 1738
RNA type mRNA
GC content 0.45
exon number 4
gene id mrpl46
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8173261 ~ 8180651 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCGTTGCATTGTGGGTACTTTCAAAAATGGCGGCGCCCTGTTGGAGGTATGCTTGGAGACCGTTATGGCAAATTACCTCAGGACCAGGGAGGTTAAAAGCTGCAGTGCGATATGTTTGTTCCAGCGCTCAGAAAGTCAAGACCGCAAGTCCACCGCCGCCCTGGGCTCTACACGGCGCCGTGTGCTTGCAGAGACTTCCGGTCATCTCTCAGGACCCGAGCCCGGTGGAGGAGAAGTTCATGGAGCTCATGCGCCAGATGGAGCTGGAGAGAAGCCTACTCTCGGACCACGAGCTGCGGCTGTTGGAGGACGCCGAGCGCATGAGCCGCAAACAGGATGCCGATTATGATTCGGATGATGAAGAGGGCTACGGAGGTCAAGAGATCGTCACAGCACAGGATCTGGAGGACACATGGGAACAGAAACTCAAGCTATTCCAACCTGCTCTGAGAATGAAAGCTTCTGACACCACAGATGTGAGCTCGGCTGAGCGCTGCCTGGGAGACAGCGTGGTGCTGCTGGTGAAGCAGGATGTTGGCTCTCAGAAGGTTTGGCTTCTGCCTCAGTTGCCGTGGGAGGCGGGAGAGACGCTGAGGCAGACCGCAGAGCGTGCCCTCGCCAGTCTGCCAGGCACAAAATTGAACGCAACCTTCCTTGGCAATGCCCCATGTGgattttacaaatacaaattccCCGAAAGCATCCAGACCGAGAACAGAATAGGAGCCAAGGTGTTTTTCTTCAAAGCCGTGCTCTCTGGTAGCGACAATCTGCCACTGGAGAAAGACACCTTCGCGTGGGTGAGAAAGGATGAGCTCCAGGATTATCTCAAGCCGGAATACCTGAAGCAGGTCAAgcgatttattttaaatctgtgaCATGCTGAGACACTGGACCCCATGTAGAAATGTCATACATATTTATGTAAGACGCTTGCTCTGACTCGGTGTAGTGGGATTGTCACAAATCAGATGCCTCGTCTGCTgatcagaaataaaatgttcattttttttgcagctcCATTTTCACGCTATAATCAGTTATGGCTCTGTGACCAAGCCTGACACACCTGACTAAATAAATCCAGATTTCCAGATGAGTTGATTAAATGAATCAGGTGTGATGGacagtgtgtgttggagtgaaGCGGGGGTCTTGATCTTGATTGAATTCTGTTCCAGTTCCATAACCACAGATGAAACAGAAGAATAACTTTTCACATTATACATGTATATTAAAGATAATAATCCGGTCTTTTCTAAAGTTCGAAATATGTTCACTTGTATTTCTTTGTCatgtattgaaaaataaattgaatgtCATCATTCTTTTATAGTAAAAAGCCACATGAAGTTGACTCTCAACCTTCAGTTGTTCTGTCCCGTTGACTCAGTCCatctttttagattttatagtgatatgttttatgtcatttttgtgtCACTGATcatcaatattaataatactgaTGGAAATAGAGCCCCTGTAACCTTTCCATGCTTGGGCGGTTCTCTTAATGCCAggtgtggatggatggaagtcATGTAATGCTGACTCAAATCAATTATCTCTTTGAaatttctttttgaaaaaaaaaaatttcacattgTTACTCTCAGCTCAAACCTTAAACATCATTTCTGTAATGCAAATGTGAATACTTAAATGATTTGTCATGTTAAACATGCTGGATGTCACTGTggttgaattctggaaaacagtaaaagaaaaaaaaaa

Function

GO:

id name namespace
GO:0005840 ribosome cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K17427 MRPL46; large subunit ribosomal protein L46

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210491 lncRNA downstream 246203 7926293 ~ 7927058 (-) True G177807
TU210390 lncRNA downstream 418243 7707511 ~ 7755018 (-) True G177729
TU210396 lncRNA downstream 422455 7728913 ~ 7750806 (-) True G177733
TU210367 lncRNA downstream 496591 7675916 ~ 7676670 (-) False igf1rb
TU210347 lncRNA downstream 621511 7551522 ~ 7551750 (-) True G177691
XR_003403692.2 lncRNA upstream 90456 8271107 ~ 8275360 (-) True LOC113536653
TU210754 lncRNA upstream 142968 8323619 ~ 8324164 (-) True G178057
TU210939 lncRNA upstream 341150 8521801 ~ 8522085 (-) True G178208
TU210961 lncRNA upstream 412535 8593186 ~ 8593405 (-) True G178227
TU211159 lncRNA upstream 530526 8711177 ~ 8712118 (-) True G178398
XM_026930256.2 mRNA downstream 48476 7992004 ~ 8124785 (-) True ntrk3b
XM_034308426.1 mRNA downstream 49078 7992004 ~ 8124183 (-) False ntrk3b
XM_034308973.1 mRNA downstream 328234 7818236 ~ 7845027 (-) False sv2ba
XM_034308972.1 mRNA downstream 328235 7818236 ~ 7845026 (-) True sv2ba
XM_026930641.2 mRNA downstream 335853 7818236 ~ 7837408 (-) False sv2ba
XM_026930771.2 mRNA upstream 126628 8307279 ~ 8312494 (-) False LOC113536672
XM_026930770.2 mRNA upstream 126628 8307279 ~ 8312494 (-) True LOC113536672
XM_026930584.2 mRNA upstream 149437 8330088 ~ 8366987 (-) False fes
XM_026930585.2 mRNA upstream 149437 8330088 ~ 8366987 (-) True fes
XM_026930586.2 mRNA upstream 149437 8330088 ~ 8366986 (-) False fes
XR_004579066.1 other downstream 584446 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other downstream 584446 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other downstream 584446 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other downstream 584446 7580434 ~ 7588815 (-) True si:ch1073-365p7.2
TU210154 other downstream 689303 7481449 ~ 7483958 (-) False si:dkey-56d12.4
trnar-acg_4 other upstream 61455 8242106 ~ 8242178 (-) True trnar-acg_4
trnar-acg_5 other upstream 62080 8242731 ~ 8242803 (-) True trnar-acg_5
trnar-ucg_7 other upstream 63998 8244649 ~ 8244721 (-) True trnar-ucg_7
trnar-acg_7 other upstream 66052 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-acg_8 other upstream 67039 8247690 ~ 8247762 (-) True trnar-acg_8

Expression Profile