RNA id: XM_026930847.2


Basic Information

Item Value
RNA id XM_026930847.2
length 3376
RNA type mRNA
GC content 0.47
exon number 2
gene id mex3b
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10068517 ~ 10073310 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGACGTCATGCAAGCATATCCCCCCCTTCCAGTTTAGTGCcgctgctgctgtgtgtctgCAGCAAAAACtcagagagaaaacaggaaaagagcTGAGCGCAGGGAGGGGCACTTTCGGAGGAATTAGTACCACCGCCGGCACCGCAACAACCCCCAGTACCTTCGGAATACGCGTTCTGGGGGGATAAAATCAGGAGCTCGGATTTGCACTGCTTCTTtcccttctttccttttttactgCCAGGaccagagagggagagagcactgatttttttttttttttgcaccaggGGCTTTTCTTTCCAGAgcctcctcttctctccctcttcaATCCCCacccttctttctctcctttgtcCGGTGTTGCTGATCCAAGAGAGCTGCCGAGAAAATAACAACAATCCCCCCCCTTCTTCCCGAGATGCCTAGCTCCCTGTTCCCCGAGCTGGAGAGGAATGGCAGCGGCAGCAGCCAGGGGGTCGACGCCCTGGACGACCAAAGAGCTCTGCAGCTCGCGCTGGACCTCACCCTGCTCGACCTGGACGAGAACCCCGCGTGCGACAACGAGCCCCGGAAGAAGAGCGTGAACATGACCGAGTGTGTGCCCGTGCCCAGCTCCGAGCATGTGGCCGAGATCGTGGGCAGACAAGGTTGCAAGATTAAAGCCCTGCGTGCCAAGACCAACACCTACATTAAGACTCCGGTGCGAGGGGAGGAGCCCGTGTTCGTGGTGACGGGCAGGAGGGAGGACGTAGCCATGGCGCGGAGGGAAATCATCTCAGCGGCCGAGCATTTCTCCATGATCCGAGCATCACgaaacaaaaacagcagcatGAATGGGGGTGGCAGCGTGCCTGGGCCGCCCAACCTACCGGGTCAAACCACCATCCAGGTGCGAGTGCCATACCGTGTTGTCGGGTTGGTGGTGGGACCCAAAGGAGCCACGATCAAGCGCATCCAACAGCAGACACACACCTATATTGTGACCCCGAGCCGAGATAAGGAGCCTGTGTTCGAGGTAACAGGCATGCCGGAGAATGTGGATCGAGCGCGTGATGAGATTGAGGCGCACATCGCCATGCGCACAGGCGCTGGGCTGATCGAGTTCGCCAATGCTGCTGACGATAATGACTTCCACGCCAATGGCACAGATGTGGGCTTTGAAATGCATGCAGCTAGTGCCAGCAGTCATCACGCCAGCCTATGGGGCAAAACAAGTGCTAGTGCTAGTGCCAGCGCCACGCCCAGCCTTGGACGCAAGCCCTTCGCCAGCTATCGCAACGACAGCTCCAGCTCTCTAGGTAGCGCCTCCACTGACTCGTACTTCGGCACCAATTATAGCCCGCCGAGTCCAGCACTGagctacaacaacaataacaacaacaacaacctgaACATCAACGGCAACTCGTTTGTTTATGGCGGCGAGATCGTATCTCCTGACTGTGCTGACCTCGCGTTCGATTCCTCGCCCGGATTTGACCCAGCGCCTGGTTTGATTTGGTCTCAGTACGAACGTAGCATGAGTTTAACAAACAGTGCTACGTCGTCCTCCATGTTCCCTTCCAATGCTTCCTCTAACGCTAATGGGATTCTGGCCAACCAGAGGCGGCTGAACGGGATGAACTGCTCCACCCAGCCTCGTTTATCCCCGCCCCTTCATCATGTGGGTGGGATCAGTGATCATCCACTGGCCAGGAGGGTACGCAGCGACCCAGGTGGAGGCTCCTTAAATTTCCCAGGCTACAACAACATGGCTTCCCATCTCCCTGGGTTGCCCTCAGATTCATCTGCGTCCTCCTCTTCTTCgtcatcttcctcttcctcctcttcctcttcctcggGAACGAGCCGTAAAGGCAGCCGGGACTGTTCAGTGTGCTTCGAGAGCGAGGTGATCGCCGCCCTCGTGCCATGCGGCCATAACCTCTTCTGCATGGAGTGTGCCAACCGCATCTGCGAGCGCAATGACCCTGAATGCCCCGTCTGCCACGCTGCAGTTACTCAGGCAATACgtatattttcataattaaataaacaattcaaAGATGATGACAAAGACATGACTATGATAGCAACAAAGATAGCACCACGACAGAACATTTAACCACAAACTCCTGTTATGGCTTTATGAAACTCCTAATAATAACGCGTCTATCATAcgtgtatatacatatgtatgtgaaGCTGCAGTATCCAAAAAAGTGAAAGCCGAATGAGGGCTCTGGTGTCATTTGCTTATACTGTAGCTCGGGACGAATAATTTCAACCTCTAATgcatgtttaaatgtatttaaaagcCTAGTAATCTACATAGTTCTAGTACAGCGTACGCAGACAAAGTTTTTCCGCAAAGTCCGGAGAAGGGCCGCAAAAGTCTGGCCAACGGTACGTGAGTCAGCATGTAGACTGTTATCAAAGTCAGGCCTTTCGATTTCACCAAGGGATCGGAAACACATTGATTGACTTACAGCAACGACGATACTGCAGCGACTACAAATTATCCGAGGCGGAGTGATAACATATCctgcatatatatgtatagaacAAACGAACCAACGAAATCCACacgttttaaatattaatgacattaatacagattgaagtattttattcttttttgaCTTGAAAGATTATATTTCATATGGCAAAGATGTTTacagatattttaatttaagttCAGTGAACTTTTTTGTAGCTGGGTTCAAATatggtttattttttagtaTGGCCTTCGGGCAACGAacactgtattattttaatatcacaCAGAAAATGTGGATGGACGATCCGAAACACGGTGTGTACTTGCATTAACAGTATTCTGTTGGGACTGAGGGTTTCTaggttcagcaaaaaaaaaaatcttttaaatccGTTTCACCCagcatattttttattcagtaatataaagcatattttattctatattattaCGAAGCATTCAAATGTATAAAACTTAGTAAGTTGGACAAAAGGAAACCATTTATGCTTTCTAAAAATTTGTATGAATTAGATTCCAGTGGGTATTACAGACTTCTGTTGCACCACTATAGTTTTAGTATTTCTATTTTAATACGTTTGTTTACCACTTGTTTATGTATATGTAGGTGAAGTTACTTGAGCGTAAAAGTACTTTATTGAgcaaagtttaaaaacaaagtatattttattttatgataaaaaaaaggcCTTTAACCTCATGGTCAAATACTAATATTATATTTGCTGAAACAAGATTTGAAAAATGTATcaagagttttatttttctgacatTTAAAGTTCTACATGATAAAGTAAAACTTAAGTAATGGTGctacttcatgtttttttaagtatttctaTATAAGTCCAATAAAATGGTACATGAAAGA

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15686 MEX3, RKHD; RNA-binding protein MEX3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211840 lncRNA downstream 294108 9770818 ~ 9774409 (-) True G179021
TU211823 lncRNA downstream 314138 9739531 ~ 9754379 (-) True G179004
TU211776 lncRNA downstream 441334 9625284 ~ 9627183 (-) True G178961
TU211728 lncRNA downstream 624590 9440919 ~ 9443927 (-) True G178914
TU211709 lncRNA downstream 661299 9387507 ~ 9407218 (-) False LOC113536412
TU212223 lncRNA upstream 38718 10112028 ~ 10112242 (-) True G179372
TU212321 lncRNA upstream 413555 10486865 ~ 10487943 (-) False sh3gl3a
TU212324 lncRNA upstream 438311 10511621 ~ 10512024 (-) True G179466
TU212327 lncRNA upstream 441386 10514696 ~ 10515201 (-) True G179469
TU212342 lncRNA upstream 488093 10561403 ~ 10563452 (-) True G179478
XM_026930381.2 mRNA downstream 203732 9837999 ~ 9864785 (-) False LOC113536465
XM_026930380.2 mRNA downstream 203732 9837999 ~ 9864785 (-) False LOC113536465
XM_026930379.2 mRNA downstream 203732 9837999 ~ 9864785 (-) True LOC113536465
XM_034308511.1 mRNA downstream 210010 9837999 ~ 9858507 (-) False LOC113536465
XM_026930358.2 mRNA downstream 232557 9827948 ~ 9835960 (-) True stard5
XM_034308813.1 mRNA upstream 40773 10114083 ~ 10250461 (-) True efl1
XM_026930679.2 mRNA upstream 41303 10114613 ~ 10251340 (-) False efl1
XM_026930678.2 mRNA upstream 41303 10114613 ~ 10251217 (-) False efl1
XM_026930622.2 mRNA upstream 184997 10258307 ~ 10452771 (-) True adamtsl3
XM_026930623.2 mRNA upstream 184997 10258307 ~ 10330765 (-) False adamtsl3
TU211855 other downstream 253292 9813892 ~ 9815225 (-) True G179035
TU211757 other downstream 545187 9522416 ~ 9523330 (-) True G178942
trnae-uuc_3 other downstream 1177819 8890627 ~ 8890698 (-) True trnae-uuc_3
trnar-acg_8 other downstream 1820755 8247690 ~ 8247762 (-) True trnar-acg_8
trnar-acg_7 other downstream 1821742 8246703 ~ 8246775 (-) True trnar-acg_7
TU212647 other upstream 1170665 11243975 ~ 11246305 (-) False nppc
TU212749 other upstream 1335782 11409092 ~ 11415440 (-) False G179803
TU212758 other upstream 1422764 11496074 ~ 11503962 (-) False LOC117598430
TU213621 other upstream 2644051 12717361 ~ 12720476 (-) True G180485
trnam-cau_27 other upstream 3163093 13236403 ~ 13236475 (-) True trnam-cau_27

Expression Profile