RNA id: XM_034308396.1


Basic Information

Item Value
RNA id XM_034308396.1
length 1702
RNA type mRNA
GC content 0.56
exon number 10
gene id crtc1b
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19442164 ~ 19458174 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAAATCCTCCGCGCGGTGACGAGGCGACGGCGCCGCTCACGTCTGGCGCAAAGGTCTGTTTTGGAGAAGAACGGAAGATGGCGACCTCAAACAATCCGCGAAAATTCAGCGAGAAGATTGCGCTGCACAACCAGAAGCAGGCGGAGGAGACGGCGGCGTTTGAAGAAGTCATGAAAGACCTGAGCATTACTCGAGCCGCACGGCTGCAGTTACAGAAGACCCAGTATTTGCAACTGGGCCAGAATCGTGCTCAGTGCTATGGAGGTTCACTGCCCAATGTCAATCAGATTGGAAATAGCAACACTGACCTGCCTTTTCAGACTACAGTTTTGGATACTAGTCGAACGACTCGGCACCACGGCTTGGTGGACCGCGTGTATCGGGACAGAAATCGGATCACGTCCCCTCATCGCAGGCCTCTCTCAGTGGATAAACATGGGCGTCAGATCGACAGCTGTCCTTATGGCTCAGTGTATCTGTCACCTCCCCCGGACACCAGCTGGAGGAGGACCAATTCTGACTCTGCGCTACATCAGAGTGCCATGAATCCTGCACAGCAAGATACTTTTGTTGGAGGATCCCAAGAACTGCAGCCAAAACGAGTCGTCTTGCTCACCCCCCCAGATACAGAGGAGCCtgaaacagaaatggaaaatgaCGATCAGAAGGCATCACTACATCCCAAATCCCATGATGTTCCAGGGATTAACATCTTCCCATCCCCTGATCAAGAAGTGAACGCCACACTGATGCCAGCCGCACACAGCACAGGTGGCTCCTTGCCCGACCTGACCAACATCCAGTTCCCCCCTCCCCTGCCCACTCCTCTGGACCCGGATGACCCCGTGACCTTCCCGGCCCCCAGCACTTCCAGCAGCACAGGCAATCTGAGCACCAACCTCACCCACCTGGGCATCAGCGCTGCCAGCCATGTGGCTGCCTCCACCCCCGCACCCGCTGGCGCTGCCCTCACGCTCAACATCGAtgcccagcagcagcagccatgCCCCCAGCAGCTCTCACCTACTCTTTCTCCCACTCTCTCACCTCAGATGCCCATTTCTCAGCCAATTGTGATGGACAGCATGTCTCTGGAGCAGCAGCTGTCACAGTACTCGCTGCTCAGCCTGCTGAGCGAtctgcagaagcagcagcagacGCTGCCACAGAACATCCGCCTTATCCAGCTGCCACCAATCACCGTCAGCTCCGCCTCCAGCCCACCCCAGACCTCCTTGTCCAGCCAATCGCCAACAGCCACAAGCGCACCAGTCAGCTCGCTCGAGCAGTTCAACATGAACATGATTGAGAACCCAAGCAGTTCAAACAGCTTGTACAATCCATGCTCCACGCTCAACTATACACAGGCGGCCATGATGGGTTTAACCGGGAGCCACGGCAGCTTGCAGGACACGCAGCAACTAGGCTAcagtaaccatggcaacattCCCAACATTATCCTAACAGTCACAGGCGAGTCGCCACCAAGTCTCTCCAAGGAGCTGAGCAGCTCGCTGGCCGGCGTGGGTGATGTCAGCTTCGACGCGGACTCTCAGTTCCCGCTGGACGAGCTAAAGATCGATCCACTGACCCTGGATGGGCTACACATGCTTAACGACCCAGACATAGTGCTGGCCGACCCAGCCACAGAGGATACGTTCCGCATGGACCGCCTGTAAAGCAAgcgaactgaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218173 lncRNA upstream 360679 19081252 ~ 19081485 (+) True G184340
TU218141 lncRNA upstream 429552 19012407 ~ 19012612 (+) True G184309
TU217958 lncRNA upstream 547289 18891239 ~ 18894875 (+) True G184167
TU217565 lncRNA upstream 837242 18598718 ~ 18604922 (+) True G183796
TU217566 lncRNA upstream 844924 18593698 ~ 18597240 (+) True G183797
TU218370 lncRNA downstream 1644 19459818 ~ 19461690 (+) True G184504
TU218369 lncRNA downstream 3650 19461824 ~ 19462843 (+) True G184503
TU218362 lncRNA downstream 28198 19486372 ~ 19487778 (+) False smim7
TU218363 lncRNA downstream 28198 19486372 ~ 19487778 (+) True smim7
TU218480 lncRNA downstream 68703 19526877 ~ 19545502 (+) False LOC113546543
XM_026919525.2 mRNA upstream 2983 19429911 ~ 19439181 (+) True klhl26
XM_026919355.2 mRNA upstream 25989 19405686 ~ 19416175 (+) True rab3ab
XM_026929179.2 mRNA upstream 38945 19359117 ~ 19403219 (+) False LOC113535669
XM_026923920.2 mRNA downstream 28154 19486328 ~ 19487784 (+) False smim7
XM_026928296.2 mRNA downstream 32258 19490432 ~ 19495901 (+) True LOC113535100
XM_026929979.2 mRNA downstream 40189 19498363 ~ 19505101 (+) True slc35e1
XM_034308463.1 mRNA downstream 50859 19509033 ~ 19524997 (+) True si:ch73-40i7.2
XM_034308528.1 mRNA downstream 68872 19527046 ~ 19531687 (+) True LOC117595669
TU218227 other upstream 172942 19254957 ~ 19269222 (+) False adgrl4
TU217312 other upstream 1645545 17795445 ~ 17796619 (+) True G183549
TU217273 other upstream 1660351 17773713 ~ 17781813 (+) False ect2
XR_004579060.1 other upstream 1690662 17672171 ~ 17751502 (+) True mcf2l2
TU218488 other downstream 73907 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other downstream 92208 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218602 other downstream 237070 19695244 ~ 19700274 (+) True rps15
XR_004579107.1 other downstream 369812 19827986 ~ 19834414 (+) False tax1bp3
XR_003403385.2 other downstream 407624 19865798 ~ 19871463 (+) True ccl44

Expression Profile