RNA id: XM_026930853.2


Basic Information

Item Value
RNA id XM_026930853.2
length 5277
RNA type mRNA
GC content 0.50
exon number 24
gene id dennd5a
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4079858 ~ 4128554 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCACAAGCTCGAGCTCGAGGAGCGGTCGAAAAACAGCTGTGCGAGCGCCCACAATGCAATTCGGTCGCCTTCACGGGCTcgtgctttgatttttttttcggtatatatacacacacacacacacacacacatatatatatatatataaagcgcGTCCGCGATGGCTACGCGAAATAAACCCGGACCGATgggtgtgtaataataatatgcaccTCAGCAGCACGGCGGACACACGGCCACGACCGGACCAGCCTCAAAATGAGCACCGGCTTCAGCTCCAACTCCTGCCGGTTCGCGGATTACTTCGTTATCTGCGGACTCGACACCGAAAGCGGGCTGGAACCAGACGAGCTGTCCGCTTTATGCCAGTATATACAAGCTTCTAAATTCAAAGAGGGTGCCCAAGGAAAGTTGGCGATTGCACGTGAAGGTGAGAATTTTGAGCAGAGTCCACTGCGGAGAACATTTAAATCCAAAGTTCTAGCTCATTACCCCGAGAATGTGGAGTGGAGTCCGTTCGACCAGGATGCAGTGGGCATGCTCTGCATGCCCAAGGGCCTGTCTTTCCGCACTCAGGCAGACTTACGCGAGCCCCAGTTCCACTCGTTCATCATCACACGTGAGGACGGCTCACGCACCTACGGCTTTGCGCTCACCTTCTTTGAGGAAGTGACCAGCAAGCAGATCTGCAGTGCCATGCAGACGCTCTACCACATGCACAATGCCGAGCAGCAACATGATACCCAGCCGCGCCTGCAGCGCTTCGACTCTTATGACATCGGTCGCGACACGCTGTTTGTGTCCAAATGCATCTGCCTGATGGCACCCATGGCCTTCGCACAGGCGAGTCGCAAAATCCTCCAGCAGCTGCACCAGGCCGTGACGTCTGCACAGCCTCCACCGCTGCCACTCGACAGCTACGTGTACAACATCCTGTATGAGGTGCCGCTGCCACCTGCTGGCCGTTCGCTCAAATTCTCAGGCGTCTATGGGCCTGTGGTGTGTCAGCGCCCCAGCTCTGCTGAGCTGCCACTCTTCGACTTCCCCATACGAGACGTTATCGAGTTGCTCGGCGTCGAAAACGTGCTGCAGCTGTTCACCTGCGCTCTGCTCGAGATCCAGATCCTGCTCTACTCACAACATTACCAGCGGCTGATGACCGTGGCCGAGAGCATCACGGCTTTAATGTTCCCATTCCAGTGGCAGCACGTCTACGTGCCCATCCTGCCCGCCTCGCTGCTGCACTTCCTTGATGCGCCCGTGCCTTACCTCATGGGCTTACACTCCAACGGCCAGGACGACCGCACCAAGCTGGAACTGCCTCAGGAGGCCAATCTGTGCTTCGTCGACATTGACAACCACTTCATTGAGCTGCCTGAAGATTTGCCACAGTTTCCCAACAAGCTGGAGTTCATCCAGGAGATCTCAGAAGTTCTGATGGCATTTGGTGTGTCCCCAGAAGGAAACGTGCACTGCAGTGAAGGCTCGAGTAAGCTAAAGGGCTTCCGTGCGGCGGACATGGCTTCGGACAAACGCAATGGGAACCTGGCTGGCTCTCCGCTGAACTCCTACATGCTGAGGGAGAACGAGACCATTGCACGGCTGCAGGCCCTGGTCAAGAGAACCGGAGTCAGCCTGGAGAAGCTGGATGTGAAAGAGGACTCAGGCACAAATAAGGATATGAAGATGcagtgtgatgaagaggagcTGAAGATGCACCAGCTGAACATTCGTGTGCGGGAAGTTTTCGCCAACCGTTTCACACAGATGTTTGCCGACTACGAGGTCTTTGTCATCCAGCCCAGCCAGGACAAAGAGTCCTGGTTCAGTAACCGGGACCAGATGCAGAACTTCGACAAGGCCTCCTTCCTGTCTGACCAGCCGGAGCCCTACCTGCCCTTCCTGTCCCGCTTCCTGGAGACGCAgatgtttgcttcttttatCGATAGCAAGATCCTGTACCACGACGACGAGGACAAAGAGCACACGCTGCGAGTGTTTGACAGTCGTGTGGAAAAGGTGCGGCTGCTGAACGTCAGGACACCGACACTGCGCACCTCCATGTACCAGAAATGCACCAACATTGAAGAAGCAGAGAAGGCCATCGAGATGCGGCTCTCTAAGATCGACCACACGGCTGTGCATCCACACCTGCTGGACATGAAGATCGGGCAGGGCCGCTACGAGCAGGGCTTCTTCCCCCGACTGCAGTCCGATGTGCTCGCCACCGGACCCACCAGCAACAAGTGGACTAAGCGCAGTGCTCCTGCACAGTGGAGAAGGAGGGACAGACAGAAGCAGCATGCAGAGCACCTTTATCTGGACAACGACCAGCGAGAGAAATACATCCAGGAGGCTCGTAACCTAGGCACCACCATCCGCCAGCCCAAACTGTCCAACCTGTCCCCTTCTGTCATCGCTCAGACCAACTGGAAGTTTGTGGAGGGTCTGCTGAAGGAGTGCAGGAATAAGACAAAGCGCATGCTAGTGGAGAAGATGGGCAGGGAGGCAGTGGAGCTCGGTCACGGTGAGGTCAGCATCACTGGTGTGGAGGAGAACACACTCATCGCAAGCCTCTGTGACCTGCTGGAGAGAATCTGGAGCCACGGGCTGCAGGTTAAACAGGGGAAATCTGCCTTGTGGTCGCACCTGCTGCATTATCAGGAGAGCAAAGAGAAGAGAGATGCCACACCAGCCGGCTTAGGGCCTCCTGGTCTCATTCATGACACAGAGAGGCGGAAATCAGATGCCAGCTTTGCAATGCCGCCTCTTAAAGTCTCTTTGATTGAGGACATGAGGCACATTCAGAACATTGGAGAGATTAAGACAGACGTAGGGAAGGCCAGAGCCTGGGTGCGTCTCTCCATGGAGAAGAAACTGCTGTCCAGACACCTCAAACAGCTCCTGTCTGATCACGAGCTCACCAAGAAGCTCTATAAGCGCTATGCCTTTCTGCGCTGCGATGACGAGAAAGAACAGTTTCTCTATCATTTACTGTCTTTCAATGCCGTCGATTACTTCTGCTTCACCAACGTCTTCACCACAATCATGATGCCGTATCATGTGGTGGTCATTCCTAGTAAGAAGCTGGGTGGTTCCATGTTCACAGCTAAcccctgggtgtgtgtgtcggggGAGCTGGCTGAAACTGGAGTACTCCAGGTGCCGAAAAACACTCTGGAGATCACTTTTGAGTGCCAGAACCTGGGCAAGTTGACCACAGTGCAGATGGGCCATGATAACTCAGGATTGTACGCCAAGTGGCTGGTGGAGTGTGTTCTGGTCCGAAATGGGATCACAGGACACACTTACAAGTTTCCATGTGGCCGCTGGCTGGGAAAAGGCGTGGACGATGGCAGTTTGGAAAGGATTCTAGTGGGAGAGTTGGTGACTGCAGGCTCAGAGAATGATGACAGGATGTGTCGCACTCCTCCCATGCAGCAGTCGCCTGGGATGATGCGCCGATTCGTTACCATCTCACCAAATAGCAAACCAAaGCTGAACACGGGGCAGATCCAGGAGGGGGTCGGAGAGGCAATTAATGGAATCGTAAAACACTTCCATAAACCAGAGAAAGAGAGAGGAAGTCTGACTCTTCTTCTCTGTGGAGAATACGGTCTGGTCTGGGCTCTCGAGCAGGTGTTCCAGCACGGCTTCAAGTCACCACGCCTCTTCAAGAACGTCTTTATTTGGGATTTTCTGGAAAAGGCGCAGGTTTACTTTGAAAGTGCCGAGCAGAGTCAGGTAACTCAGGATGAAAACTATCAGACGAGGGTGCGCCATTTCTGCCGCTTCATGCGCGCCATCAGCAGCACCCCCAGAAACATTGGCAAAGATGGAAAGTTCCAGCTGCTCGTGTGCCTCGGAGCCAGAGATCACTTGCTTCACCACTGGATAGCTCTGCTGGCTGATTGTCCCATCACAGCACAGATGTACGAGGACATGGCACTGCTAAAAGACCGTTCTCTAGTGAACTCTTTGATCAGAGTGTTACAGACTTTGCAAGAATTCAACATTACTCTGGAGGCATCTCTCGTCAAAGGGATTGGAATATAAAACCTTGCCCTCCTGCTCCTGTgaagtagaagaagaaagaCATAATCCAGGCAGATCAGCGTGGACCATGGACTATttggcgtttttttttcttttttttttttttttacatgaagaGACTTGAACAAAAGAACTACACCTGGCTTACATTAAAGCTACTGTCATGTTAGCCGTATATAAAGTGCAATGAGCCTTTTCAAAACGTGTCATTATTTTTATCCTCGACGCTGTCGCTGTTAGACATTTAAGATATGTTTTGTATTATGATCCCACCTGTATAGCCCACCTGTGCTATACTGTTTTAATCAAAAGCTCAGTATTTTCATTGCTATTGTGAACTCCTGGCGAcagctgtatttaaaaaaaggagagcAAGGAAGAAAAAAGGGTAATATATTTTCGAAGAAGAGCAGTATTATTTTGATATGTCTGTCACGTTGCTTGCTCTGTGGTCTATCTAATCCATACTGTCACAATGCAGAGTGAAAAGCAAATGATGTAGAAGTATGCTTTATAAGTATAACTCATGGGAAtctcatattttaattaaaacacacacaaaaaacaagaaattagctcttgtttttttttcaaaccaggGGACTTAAATCGAAACGTATGCAAATCTCCACGAGCACATGCTGAGATTAGACTATGTTAGATGATAGGGTGCATAAAAAGGATGACAAAGTGTATTTTATGAATgagaaagtagaaaaaaaaacattcagacctcttaaaaccattttaaacaACTTTCCAGTTAACTCACACATTTTCATAGCCAGAATTCTCTCAGTGTAACCAGTGTATCCCTATTAGATAAAATATGACATCAGTTCATCATATTTTTTAACCCTCAGGTCTGCACATCAGCCAGTAGTCATAGCCCAGAGACATTGAGGGTTTTATTGGCCTCCATGAAAGCCCAAAGCTCAGCGTCATTTGTTTCTGCTATGCAATATTTACATCTCCATGAAGCCTCCACTGATACACAGTACAATACACTGACAGAACAGAGGCTTTGTCCAGATGTTCTAGTGTAGCATATGATGTGTAGTCCAGAAGCTTCTGAAGTTTTCTGGCAGTCTCCACACCAAAATGCTCTAAAACTGCATCATTTGTCTCTTGGTACATTTTAGACAGGACTGTGTAAGGTAGTGTTTAATAATTGAgcaacagtgtacagtgtataaaatgtattaaaagtgAGAATTCCA

Function

GO: NA

KEGG:

id description
K20164 DENND5; DENN domain-containing protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207924 lncRNA upstream 68625 4010238 ~ 4011233 (+) True G175703
TU207713 lncRNA upstream 433134 3645743 ~ 3646724 (+) False pth1b
TU207699 lncRNA upstream 465461 3614191 ~ 3614397 (+) True G175527
TU207689 lncRNA upstream 471014 3605162 ~ 3608844 (+) True G175517
TU207662 lncRNA upstream 497919 3579978 ~ 3581939 (+) True G175493
TU207982 lncRNA downstream 39633 4168187 ~ 4168401 (+) True G175744
TU208084 lncRNA downstream 171551 4300105 ~ 4300563 (+) True G175827
TU208102 lncRNA downstream 240053 4368607 ~ 4368810 (+) True G175843
TU208155 lncRNA downstream 257231 4385785 ~ 4385994 (+) True G175894
TU208168 lncRNA downstream 380862 4509416 ~ 4509701 (+) True G175905
XM_026930874.2 mRNA upstream 2130 4066579 ~ 4077728 (+) False tmem41b
XM_026930873.2 mRNA upstream 2130 4066581 ~ 4077728 (+) True tmem41b
XM_026930288.2 mRNA upstream 40141 4019927 ~ 4039717 (+) True pkd1l2a
XM_026930351.2 mRNA upstream 156889 3912784 ~ 3922969 (+) True dkk3a
XM_034308627.1 mRNA upstream 156889 3912784 ~ 3922969 (+) False dkk3a
XM_026930858.2 mRNA downstream 3048 4131602 ~ 4137388 (+) True sinhcafl
XM_026930859.2 mRNA downstream 3185 4131739 ~ 4137388 (+) False sinhcafl
XM_034308802.1 mRNA downstream 3386 4131940 ~ 4137388 (+) False sinhcafl
XM_034308801.1 mRNA downstream 14083 4142637 ~ 4145671 (+) True LOC113536728
XM_026930437.2 mRNA downstream 78404 4206958 ~ 4228964 (+) True mmp15b
TU207714 other upstream 421582 3647370 ~ 3658276 (+) False btbd10b
TU206600 other upstream 2001231 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 2019575 2058970 ~ 2060283 (+) True G174536
TU205870 other upstream 2714927 1361782 ~ 1364931 (+) True G173898
TU205778 other upstream 3337148 742021 ~ 742710 (+) True G173819
XR_004579071.1 other downstream 152690 4281244 ~ 4297247 (+) False nadsyn1
TU208265 other downstream 528051 4656605 ~ 4661136 (+) True G175977
XR_003403680.2 other downstream 2993831 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 3139330 7267884 ~ 7271320 (+) False rpl37a
trnae-cuc_24 other downstream 3473672 7602226 ~ 7602297 (+) True trnae-cuc_24

Expression Profile