RNA id: XM_026930859.2


Basic Information

Item Value
RNA id XM_026930859.2
length 1734
RNA type mRNA
GC content 0.41
exon number 6
gene id sinhcafl
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4131602 ~ 4137388 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACGGTAAGCTCTTTGTTTGTAATCGGTGTGAAGTCGTGATTAAACGCCGTGACATGATCAACCAGAGATGTTTGGATTTCACAAATCCAAGATTTATCGCAGCCACGAAGGCTGCTGCATTTGCAAGACCAAGTCCTCCAGTTCCAGGTTCACAGACAGCAGCAGATACGAGGAGACCTTCCGCCTCTGCTTCGGTTTATCTGAAGACCGAGTCGGCGACATCTGCAACGCCTGTGTACTGCTGGTAAAGAGATGGAAAAAGTTACCCCATGGATCGAAGAAGAACTGGAGTCACGTGGTGGACGCGAGAGCAGGACCTGGCTTCAAGCTGACAAAACCCAAAAAAGTGAAGAATATcgatgggaagaagaaaagcaagCTGAAGAAACTGCACAAGTTTAAACGGCAAAATTCTGATGCCCACAGCACTACATCCAGCATGTCTCCCTCTCAGTCCCCCAGCCACAGCAACCAATCAGACGATGGCTCAGACGTTGAGACCAAGCAGAGGCGCCCGACTCCAGCAGGCTTCTCGTTTCTTGACCTCTCCTACTGGAAAAGACAGAAAGTGTGCTGTGGCATTGTATACAAAGGGCGTTTCGGTGAAGTCATCATCGACCCGCGCCTCTTCAAGCCCTGCTGCGGCTCCAAGCAGCCGCCGGCCGTGACGTCGCCCGCCACGGACTCCCCGTGCGCCGCCGACACGATGCCATCTCCCCTCGCAGAGGACTTGAAGGAGACCTGGTGACCTCGTTGCACCTCCAAGCGTCTCCTCATGGCGTGGCTTTGTCTCCAGTGGCAGACTCTATCATTCCCACATGACTGTATAAATGCTgattcttgctttttttttggttcatttgttaTAGCGATTTCCTTttgagagaatttttttttttttttttgtaaagaaaacgaaaaaaatcaattaaaaaaaattaagtatgGGCATTAGTAAATATTCATAGGATCAGGATCAAATTGACGGTTTAAGACttgtaatcctttttttttttttttttttttttttttttttttttaaattatattttttataaatatttttgggactgtataatattttgcatttttgtagtgcttgtaaatattttttttcttcaattccAGTGCACCAAAAGCCTCCTATCTGGCTCCTAGTTTCCTGTGTGTACATTGAGTTataaatgttcatgaaatacGGCATATTGATGTGTCCCTGACGTTGCTCAATGTGTTGATGAAATGGTTccagtttttaaacaaatcagctGTACTGTGTCTACGAGCTCATTTGATCTAGATGTGCTGGTAGAGTGGTCAGTTTTATGACACAGTGTTTTGGTTGGCAAGGTTTGAATGGGCTGATTAATATTCACAAAGTGATTATATCTCAGTTTTTGTCCATTAAATGCATGCATGTCTGTTAATCTGTCATTCCTAATTGCTATTGTCACAAGACCACAGAATGCGGGACACAAACCTTTTGCCAGTCCATCCAACAATAAACGTGCATGCTAATATTGATATtcaaaatgatatttattatagCATGCTAAGTCAGCATGTACTAAATGCATCTTCAGTTATATTGCTTAACATTCAATGTGATGGtgtgaatttttaaattttttttttggttaacaTTGATCACCAGTAATTTTTCACTACAGATTTTAACAGCATCTGTTGATAccgtgatttaaaaaaaaaaataaaactattttggCAGCTGC

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207924 lncRNA upstream 120506 4010238 ~ 4011233 (+) True G175703
TU207713 lncRNA upstream 485015 3645743 ~ 3646724 (+) False pth1b
TU207699 lncRNA upstream 517342 3614191 ~ 3614397 (+) True G175527
TU207689 lncRNA upstream 522895 3605162 ~ 3608844 (+) True G175517
TU207662 lncRNA upstream 549800 3579978 ~ 3581939 (+) True G175493
TU207982 lncRNA downstream 30799 4168187 ~ 4168401 (+) True G175744
TU208084 lncRNA downstream 162717 4300105 ~ 4300563 (+) True G175827
TU208102 lncRNA downstream 231219 4368607 ~ 4368810 (+) True G175843
TU208155 lncRNA downstream 248397 4385785 ~ 4385994 (+) True G175894
TU208168 lncRNA downstream 372028 4509416 ~ 4509701 (+) True G175905
XM_026930853.2 mRNA upstream 3185 4079858 ~ 4128554 (+) True dennd5a
XM_026930874.2 mRNA upstream 54011 4066579 ~ 4077728 (+) False tmem41b
XM_026930873.2 mRNA upstream 54011 4066581 ~ 4077728 (+) True tmem41b
XM_026930288.2 mRNA upstream 92022 4019927 ~ 4039717 (+) True pkd1l2a
XM_034308627.1 mRNA upstream 208770 3912784 ~ 3922969 (+) False dkk3a
XM_034308801.1 mRNA downstream 5249 4142637 ~ 4145671 (+) True LOC113536728
XM_026930437.2 mRNA downstream 69570 4206958 ~ 4228964 (+) True mmp15b
XM_026930420.2 mRNA downstream 143856 4281244 ~ 4297247 (+) False nadsyn1
XM_034308572.1 mRNA downstream 143858 4281246 ~ 4299367 (+) True nadsyn1
XM_034308571.1 mRNA downstream 164883 4302271 ~ 4322689 (+) True tpcn2
TU207714 other upstream 473463 3647370 ~ 3658276 (+) False btbd10b
TU206600 other upstream 2053112 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 2071456 2058970 ~ 2060283 (+) True G174536
TU205870 other upstream 2766808 1361782 ~ 1364931 (+) True G173898
TU205778 other upstream 3389029 742021 ~ 742710 (+) True G173819
XR_004579071.1 other downstream 143856 4281244 ~ 4297247 (+) False nadsyn1
TU208265 other downstream 519217 4656605 ~ 4661136 (+) True G175977
XR_003403680.2 other downstream 2984997 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 3130496 7267884 ~ 7271320 (+) False rpl37a
trnae-cuc_24 other downstream 3464838 7602226 ~ 7602297 (+) True trnae-cuc_24

Expression Profile