RNA id: XM_026930872.2


Basic Information

Item Value
RNA id XM_026930872.2
length 2948
RNA type mRNA
GC content 0.50
exon number 11
gene id galnt18b
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6358137 ~ 6461826 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagctcgcgagagagagagagagagagagagagctcgcGATGGAAGACGCGCGCGTACATGTCGGAACAGGAGGAGAGCGGCCGTCCGCGTGAGGGAGcgaaagaaaataaacacaagggggaaaaaaaaaataaataaagactcgtaaaagaaaaaaaaaacattcagattaaaagcATGCGGATAGACAGAAGCAGGTCACCTTGAGGAATGGTACTTTATTAAGCGAGGagggaagaagaaggagaagaagaaggagaaggagaagcagAGGGAGGCGGTTCCGCTGGTCCGCGGCGCACCGGCTGCTGAGGCGCTCGCGCTGCACGCAGGCATGTCGGCATGGCGTGCACCAGGAGAACCAAAACTTTGGTGTCGACGTGTGTGATACTGAGCGGCATGACCAACATAGTGTGTCTGCTCTACGTCGGATGGGTCACTAACTACATAGCCAGTGTGTATATTAAAGTGCCGGTGCCTGTCCCAGCCAGGAAGTTGGAGGGCGACAAGAAGGGCGAAACTCTGCGGATTATAGAGCGACTCGACCGGCTGGAAAATGTCGTGAACCAGCACATACAAGAAACTCCGCTGAAATCAGACAGTAATCAGGAGGACCGATCATTCTCAGACTCCTCGCTCTTCAGCCACTGGGGTCAGGATCTGAACTCCGAGAGTCGCCGCGTCGCCCTCAAGATGTTTCAGTACTACGGTTACAACGGCTACCTCAGTGACCGCCTGCCCATGGACCGAGCCATCCCCGACTACAGACCTGAAGGGTGTAAGAACATGTCGTACCCCTCAAACCTGCCGCAGGTCAGCATCGTGTTCATCTTCGTCAACGAGGCGCTATCCGTCATCCTGCGCTCCATCCACTCGGCCATGAGCAAAACCCCCAGCCACCTCCTCAAAGAGATCATACTGGTGGACGATAACAGCAGCAGCGaggAGTTGAAGGAGAAGCTGCAGGACTTTGTAGAAGAGACAAACGCTAAACGTCCAGGCTTTATAAAGATGGTGCGGCACCGTAAGCAGGAGGGTCTGATCCGGTCCCGTGTGAGCGGCTGGAGGGCTGCGACTGCCCCCGTGGTGGCCCTGTTCGACGCCCACGTGGAGTTTAACACTGGCTGGGCCGAGCCGATTCTCCAGAGGATCAAGGAGGACCGGACGCGGATCATCTCACCATCATTTGACAACATTAAATACGACACATTTGAGGTGGAGGAGTATCCGCTGTCTGCTCAGGGCTTCGACTGGGAGCTGTGGTGTCGCTACCTGAACCCACCCAAGTCCTGGTGGAACCTGAACAACACCACCTCTCCAATCAGGAGTcccgctctgattggctgcttcGTCGCAGACAGGAAGTATTTTGAGGAGATCGGGCTGCTGGACGAAGGCTTGGAAATCTACGGCGGTGAGAACGTGGAGCTGGGTGTCAGGgtgtggcAGTGTGGTGGCAGTGTGGAGGTTCTGCCCTGTGCCCGTATCGCCCATATCGAGCGCGCCCACAAGCCGTACACCGAGGACCTGACTACACACGTGCGCCGTAACGCCCTGAGAGTGGCCGAGGTGTGGATGGACGAGTTTAAGAGCCACGTCTACATGGCCTGGAACGTTCCGCAGGAGgactcAGGTATAGACATTGGCGATATCTCCGAGAGGAAAGCCCTGAGGAAAAGGCTGCAGTGTAAGACGTTCAGGTGGTACCTGGTGAACATCTACCCCGAGATGAGGATGTACACAGACACCATCGCTTATGGAGTGCTGAGGAACTCTCTGAAGAGCGAGCTGTGTCTGGATCAGGGGCCGGACACCGACAACGTCCCCATCCTGTACCTCTGCCACGGGATGACTCCACAGAACGTGTACTACAGCAGCACGCAGCAGCTCCACGTGGGCGTGCTCAGCCCCACCATCGACGACGACGACAACAAGTGCCTGGTGGACGTGAACGGGCGGCCGAGGCTGATCGAGTGCAGCTATGCCGCGGCCAAGCGCATGAAGCTGCACTGGCTTTTCACTCAGagaGGCTCCAtccaaaacaggaagtcaaagCGATGCCTTGAGCTTGTGGAGAGCAATGAAAGTGAGTTTGGCTTTGAGCTCACCGTCCAGAAATGCACCGGACAGAAATGGACTATCACGAGTGTACTGCCTGGAAGCACCTTGTAACAGGACGCTGAGAGAGTCGAGGACACTGGACAGCATCGAGAAATCTGGATAATGTCGAGGAGACCATGACACACCTGGATGTCTCTATTTGAACTTGACATCGTAtgataaatgttaaacatttttatgcCTAGCTACTGTACATGTGCATACGGATCAGCCACGTCTGGCAGATTGGACAGTGGAATATAGGtacatttatctaatattttcttattataagattattatataCCAAATATGATATAGTTAAGCCTATTTATGGATATTGTCACTCATTTCAAGCTATttatcagttattattattcaagCTGTTTAccatttactatttattatttatcaagaTGCACAAAAAATCGTATTTCATCTTCGATTTCGATCCAATTGCTATTCCTCTTTATTCGCTGTGACCAATGAGTGTAGAGAGGTTGTACCACATGACCTCATACACTTACCCGAATCATGGAGAGtctagaaaaagagaaaaaggggaaaaacagtGTCAGAATGCcgagtgaattttaaaatgacccaAAAGCCCACTTGTAGTGAGAAGAGGAACAAATTAGTccataatattattatgataataTGAAATCATGTGAAATATTAATGAGTCACTGAATCTTAAATTCCAAATAACTAAAACAAACAGTgattaaatgtgtgaaatgGACAAACTGACCAGTGACCAGTAACACATTATATGTAGAGCATGTTTACTAAAGACAGATTTTCACCTGTAAGTAAGTGATAAGTCTATTTAATAGTAA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209451 lncRNA downstream 50 6357574 ~ 6358087 (-) True G176938
TU209358 lncRNA downstream 96897 6260797 ~ 6261240 (-) True G176855
TU209329 lncRNA downstream 169849 6184335 ~ 6188288 (-) True G176832
TU209304 lncRNA downstream 181783 6172198 ~ 6176354 (-) True G176816
TU209305 lncRNA downstream 190335 6082828 ~ 6167802 (-) True G176817
TU209512 lncRNA upstream 82173 6543999 ~ 6545070 (-) True G176990
TU209514 lncRNA upstream 89088 6550914 ~ 6551262 (-) True G176992
TU209513 lncRNA upstream 89499 6551325 ~ 6551582 (-) True G176991
XR_004579067.1 lncRNA upstream 117178 6579004 ~ 6589296 (-) False LOC117598400
XR_004579068.1 lncRNA upstream 118534 6580360 ~ 6589296 (-) True LOC117598400
XM_026930590.2 mRNA downstream 61261 6227094 ~ 6296876 (-) True LOC113536569
XM_026930304.2 mRNA downstream 248765 6100029 ~ 6109372 (-) False LOC113536415
XM_026930303.2 mRNA downstream 248793 6100029 ~ 6109344 (-) True LOC113536415
XM_034308409.1 mRNA downstream 263359 6085672 ~ 6094778 (-) False LOC113536414
XM_034308408.1 mRNA downstream 263376 6085672 ~ 6094761 (-) True LOC113536414
XM_034308556.1 mRNA upstream 93893 6555719 ~ 6567757 (-) True ctr9
XM_034308784.1 mRNA upstream 160078 6621904 ~ 6643123 (-) False ampd3a
XM_034308786.1 mRNA upstream 160078 6621904 ~ 6643116 (-) False ampd3a
XM_034308783.1 mRNA upstream 160078 6621904 ~ 6643105 (-) False ampd3a
XM_034308782.1 mRNA upstream 160078 6621904 ~ 6643105 (-) True ampd3a
TU209010 other downstream 649872 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other downstream 649872 5696458 ~ 5708265 (-) False LOC113536561
trnai-uau_2 other downstream 1043883 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 1067543 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 1161319 5191964 ~ 5196818 (-) False trip4
TU210154 other upstream 1019623 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 1118608 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 1118608 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other upstream 1118608 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other upstream 1118608 7580434 ~ 7588815 (-) True si:ch1073-365p7.2

Expression Profile