RNA id: XM_026930873.2


Basic Information

Item Value
RNA id XM_026930873.2
length 2424
RNA type mRNA
GC content 0.42
exon number 7
gene id tmem41b
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4066579 ~ 4077728 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGCCGCCGAACAAGACGAAGGTTAAAGGTCACGAGCGTCATCCCGTCTCAGCGCTCATTAGGAAATAAccggctgattttttttttcaaccagcGCGAGCTCAGGTCCTCAGTTAACGACGCTCCACGCCGATTTCTaagcttcattttaaataaaccaacATGGCGAAGAAAAGGAGCGGAGTCCGCGAACCAGAAGCCACTTCTCTGATAGAAGAGGAATCGACGACAAAAGAAACGCAACCTATTAAAGCAGCGCAGTACACCGGAGGAGGATCTGCACGCATGTCCCTCCTCATCCTGATTTCCATCTTTGCCTGTGCTGCTTCAGTCATGTACCTGGTTTACAGAAATTTCCCTGAGCTGAGCGAAGATGAGAGAGACAAGATAAAAATCCCTAAAGACATGGACGACGCAAAGGCACTGGGCACCGTGCTCTCCAAATATAAGGACACCTATTATACCCAAGTGCTTTTAGCATACTTTGCTACATATGTCTTCCTCCAGACATTTGCCATTCCAGGTTCAATTTTCCTCAGTATCCTCTCTGGTTATCTGTATCCCTTCCCCCTGGCTCTGTTCCTGGTTTGCCTGTGCTCAGGTCTGGGAGCGTCTTTCTGCTACATGTTGTCTTATTTAGTGGGCAGACCCGTGGTGTACAAGTACCTCACGGAGAAAGCGCAGAAATGGTCACAACAGGTCGATAAGCACAGAGAACACCTCATCAATTACATCATCTTTCTGAGAATTACGCCTTTCCTCCCAAATTGGTTTATTAACATCACTTCCCCCGTCATCAATGTGCCTCTGGGAGTCTTCTTCTTTGGTACATTCCTcgGAGTTGCTCCTCCATCTTTTGTAGCGATAAACGCCGGAACGACGCTGTACAAGCTGACCACAGCAGGCGAGGCCGTGTCCTGGTACTCCTTGGCCGTGCTGGCTGTTCTGGCCGTAGTCTCCATCCTCCCGGTGTGCTTCCAGAGAAAGCTGCAGGAAAAGATGGAGTAAAGCGCCACCTCACTTCCTCTGCCTGTCATCCAGTTCACCCTGCTTCTCCTGGTCTTCACACGCACAgctgtctttttctttgtcGTTGTGGAAAACGGGCCCAGAACTGTTGAACTCGGACTGGCTCGTGATCATACGCGTGTTCGTTTTCCCTGTCACAGACTGAACGTTTCTATCCATTATCTTTTTATTGTTTCGtatattttttaacaacttTGTGTAATAATTAATGTTCCCATATTAAgacaaaatttttttaattttctaactTTAAAGCAATACCTTTTGAGGTGTTTTTAGCCCGTGTTGCATTGGCAGCACAAACAGGGTGCTATGCCAGGAGATATTTAAATACATCACCTCTCACATACACCGTGCCATCAACATTATATTTCCCCACAGTTTGGCCATgacagtaaatattaaaaatttgcAGATTTCTTCTGGATGATGCACCAAACACTCAGTCCTGCTGCCAACTACATGTAGGAGATTCtcctggtgattttttttctcctcacacatatagatatatatcAGAAGACACGATTTCCGACACCGAATTGTATTTATAATGCCTCATatgtattgtaatttttttttatttagctagtttgtttttgctttaatccattttgtcttAAATAACTGGTTACTGGAAAGGGTACACCTTGGatataaaagaggaaaaacaggaGTAAGAATGATGAGCGAAGACTGAAAGTCAGAAGGAACCTCATGAATCTtaagtgtattaaaaaaaaaaaaaaaaaaaagtaagacttAAGAAATACATCTCTACACATCGAGCAGTCGTTTGCACTGAATATAAGCGGCTTAGGGGGGATAATTTTCTACCGCACAAAGGTAGAAGCTGGATACCTCATCGTGTATGATCTCACTGTTTACTACATCTTCATCCAAAGCATCGGTCAGTCCTTTAGTTCCCCATCCTGGTTCTGCAAGTACTCCTGCTCTGCATAGTGATTTCTTTCCTCAGCTAAtcagctaataaataaattaatcctAATGTACAGGGTGCAGCTAAGCTCCTGTAGGACCATGACCTTTGGTTCAGTCTCTTTCAGTCTGATTGCTTTCCACAGCTCGGAGATATATTCTAATGAACCtctgtaattgtttttaaaagcacatCCACATGGCTAACGTGCATTTCTACAATGTCTTTACTTTTTCTTATGTTTTGTTCATGACTACATGATCTCTTGTCTCTTGCAATTCGGgttgcctcacacacacacacacacacacacacacacagtattacatCGAGCTCTCGGGATGTTCTTCATATGTAAATGCTACTAATTGATAactttttctttcaaatgtcATTAcgaaatattatataatgaagatatttattatgaaatgattaaaacatgGTTCCCTTCA

Function

GO:

id name namespace
GO:0008045 motor neuron axon guidance biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207924 lncRNA upstream 55348 4010238 ~ 4011233 (+) True G175703
TU207713 lncRNA upstream 419857 3645743 ~ 3646724 (+) False pth1b
TU207699 lncRNA upstream 452184 3614191 ~ 3614397 (+) True G175527
TU207689 lncRNA upstream 457737 3605162 ~ 3608844 (+) True G175517
TU207662 lncRNA upstream 484642 3579978 ~ 3581939 (+) True G175493
TU207982 lncRNA downstream 90459 4168187 ~ 4168401 (+) True G175744
TU208084 lncRNA downstream 222377 4300105 ~ 4300563 (+) True G175827
TU208102 lncRNA downstream 290879 4368607 ~ 4368810 (+) True G175843
TU208155 lncRNA downstream 308057 4385785 ~ 4385994 (+) True G175894
TU208168 lncRNA downstream 431688 4509416 ~ 4509701 (+) True G175905
XM_026930288.2 mRNA upstream 26864 4019927 ~ 4039717 (+) True pkd1l2a
XM_026930351.2 mRNA upstream 143612 3912784 ~ 3922969 (+) True dkk3a
XM_034308627.1 mRNA upstream 143612 3912784 ~ 3922969 (+) False dkk3a
XM_026930804.2 mRNA upstream 408291 3647355 ~ 3658290 (+) True btbd10b
XM_026930845.2 mRNA upstream 419466 3645978 ~ 3647115 (+) True pth1b
XM_026930853.2 mRNA downstream 2130 4079858 ~ 4128554 (+) True dennd5a
XM_026930858.2 mRNA downstream 53874 4131602 ~ 4137388 (+) True sinhcafl
XM_026930859.2 mRNA downstream 54011 4131739 ~ 4137388 (+) False sinhcafl
XM_034308802.1 mRNA downstream 54212 4131940 ~ 4137388 (+) False sinhcafl
XM_034308801.1 mRNA downstream 64909 4142637 ~ 4145671 (+) True LOC113536728
TU207714 other upstream 408305 3647370 ~ 3658276 (+) False btbd10b
TU206600 other upstream 1987954 2078077 ~ 2078627 (+) True G174546
TU206587 other upstream 2006298 2058970 ~ 2060283 (+) True G174536
TU205870 other upstream 2701650 1361782 ~ 1364931 (+) True G173898
TU205778 other upstream 3323871 742021 ~ 742710 (+) True G173819
XR_004579071.1 other downstream 203516 4281244 ~ 4297247 (+) False nadsyn1
TU208265 other downstream 578877 4656605 ~ 4661136 (+) True G175977
XR_003403680.2 other downstream 3044657 7122385 ~ 7131506 (+) False LOC113536390
TU209855 other downstream 3190156 7267884 ~ 7271320 (+) False rpl37a
trnae-cuc_24 other downstream 3524498 7602226 ~ 7602297 (+) True trnae-cuc_24

Expression Profile