Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026930880.2 |
| length | 786 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 3 |
| gene id | mrpl54 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 12947040 ~ 12948807 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| K17435 | MRPL54; large subunit ribosomal protein L54 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU213678 | lncRNA | upstream | 95861 | 12850960 ~ 12851179 (+) | True | G180534 |
| TU213659 | lncRNA | upstream | 105758 | 12836868 ~ 12841282 (+) | True | G180516 |
| TU213315 | lncRNA | upstream | 264477 | 12654422 ~ 12682563 (+) | True | G180268 |
| TU213314 | lncRNA | upstream | 292825 | 12653796 ~ 12654215 (+) | True | G180267 |
| TU213271 | lncRNA | upstream | 385259 | 12543667 ~ 12561781 (+) | True | cdc14ab |
| TU213871 | lncRNA | downstream | 187330 | 13136137 ~ 13203148 (+) | True | G180695 |
| TU213916 | lncRNA | downstream | 253064 | 13201871 ~ 13285070 (+) | True | G180738 |
| TU213946 | lncRNA | downstream | 287670 | 13236477 ~ 13239583 (+) | False | aqp12 |
| TU214029 | lncRNA | downstream | 350473 | 13299280 ~ 13302297 (+) | True | G180833 |
| TU214035 | lncRNA | downstream | 453080 | 13401887 ~ 13406255 (+) | True | G180838 |
| XM_026930664.2 | mRNA | upstream | 109192 | 12804314 ~ 12837848 (+) | True | eps15l1a |
| XM_026930666.2 | mRNA | upstream | 109192 | 12804314 ~ 12837848 (+) | False | eps15l1a |
| XM_026930665.2 | mRNA | upstream | 109192 | 12804314 ~ 12837848 (+) | False | eps15l1a |
| XM_026930667.2 | mRNA | upstream | 110004 | 12804314 ~ 12837036 (+) | False | eps15l1a |
| XM_034308829.1 | mRNA | upstream | 110017 | 12804314 ~ 12837023 (+) | False | eps15l1a |
| XM_026930877.2 | mRNA | downstream | 1591 | 12950398 ~ 12974799 (+) | True | malt2 |
| XM_026930878.2 | mRNA | downstream | 8609 | 12957416 ~ 12974799 (+) | False | malt2 |
| XM_026930491.2 | mRNA | downstream | 27711 | 12976518 ~ 12990417 (+) | True | safb |
| XM_026930798.2 | mRNA | downstream | 43457 | 12992264 ~ 13024225 (+) | True | si:ch1073-396h14.1 |
| XM_026930431.2 | mRNA | downstream | 117181 | 13065988 ~ 13085931 (+) | True | tpm4a |
| TU213294 | other | upstream | 344976 | 12573193 ~ 12602064 (+) | False | LOC117598398 |
| trnag-ucc_15 | other | upstream | 558799 | 12388170 ~ 12388241 (+) | True | trnag-ucc_15 |
| TU213163 | other | upstream | 613409 | 12328066 ~ 12333631 (+) | False | timm13 |
| TU213106 | other | upstream | 891291 | 12054958 ~ 12055749 (+) | True | G180121 |
| TU212683 | other | upstream | 1517701 | 11428613 ~ 11429339 (+) | False | G179758 |
| TU213850 | other | downstream | 147566 | 13096373 ~ 13098156 (+) | False | ankmy1 |
| trnag-gcc_9 | other | downstream | 301563 | 13250370 ~ 13250441 (+) | True | trnag-gcc_9 |
| trnag-gcc_10 | other | downstream | 307250 | 13256057 ~ 13256124 (+) | True | trnag-gcc_10 |
| trnag-gcc_11 | other | downstream | 309201 | 13258008 ~ 13258076 (+) | True | trnag-gcc_11 |
| trnag-gcc_12 | other | downstream | 315017 | 13263824 ~ 13263894 (+) | True | trnag-gcc_12 |
