RNA id: XM_026930897.2


Basic Information

Item Value
RNA id XM_026930897.2
length 2301
RNA type mRNA
GC content 0.45
exon number 10
gene id chrna7a
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5199143 ~ 5220239 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATCCCTGAAGGAGGAGCGGGTCTGACTCGGGATATTTCCCCAGTCCTGagttctttcttcttttccaggCTAAAATGGGAATTTGCGGTTTTGCGCTTTGTTTAGCAATCACTACATGTTTGTGGAGGGCATCCATTCAAGGAGAGCATCAGAGGAGGCTGTATCGAGACCTCATGAAAGATTACAACCCTCTAGAGAGACCTGTGTTTAATGACACCCAGTCACTGACCGTAAACTTCAGCTTCAGCTTGATGCAGATCATGGACGTGGATGAGAAGAATCAAGTTCTCACAACGAACATATGGCTACAGCTGTACTGGTTCGATCATTACCTTAAATGGAATGTCTCCGAATATCCCGGTGTGACGAGCGTCCGATTTCCTGATAGCCAGATTTGGAAGCCTGACATTTTGCTTTATAACAGTGCTGATGAGCGATTTGATGCCACCTTTCACACCAACGTGCTAGTCAGCTCCAACGGCGCCTGCCAATACTTACCACCAGGTATCTTTAAAAGCACATGTCACATCGACGTGCGGTGGTTTCCCTTCGATGTTCAGCGGTGTGACCTGAAGTTCGGCTCATGGACGTACGGTGGCTGGTCGCTGGACCTGCAGATGATTGAGGCTGATATCACAGGCTATATAGCCAATGGAGAATGGGACCTTGTAGAGGTTCCAGGTCACAGGAATGAAAGGTTCTATGACTGCTGTAAAGAACCGTACCCGGATGTGACGTTCACAGTGGTGATGCGGAGACGGACGCTGTACTACGGTCTAAACCTGCTCATTCCATGTGTCCTCATCTCCACACTGGCTCTGCTCGTCTTCCTCCTGCCTGCAGATTCAGGCGAGAAGATCTCCCTCGGAATCACAGTTTTGCTCTCACTGACTGTCTTCATGCTCCTGGTTGCCGAAATCATGCCTGCGACGTCAGACTCAGTGCCTTTAATCGCTCAGTATTTTGCCACTACCATGGTTATCGTCGGGTTGTCGGTGATAGCCACAGTTTGGGTCCTACAGTATCACTACCATGATCCCGATGGAGGAAAAATGCCAAGATGGACACGTGTGGTGCTGGTGAACTGGTGTGCATGGTTCTTGCGGATGAAAAGGCCGGGCGAGGAGCGAGTGCGCTCAGCGTGCCACGACAAGCGTCCACGCAGCAGCGTCTCCAGCGTGGAACCGACCAATGGAAACGTTCTCTACATGGGCCTGCGTGGTATGGAGAGCCTGCCCTGTGCCACGTCGCCCGACTCAGGGGTGGTGTGTGCCCGTCTCATGGGGACGTCCGAAGAGGCTCCGTCAGTGAGCAGCGGGCAGGGAGACACGGAGCTGTCCAAGATCCTGGACGAGGTGCGCTATATTGCCAAGAGGTTCCACGACCAGGATGAAGAGGAGTCTTTGTGTAGCGAGTGGAAGTTTGCTGCCTCGGTTATCGACCGCTTGTGTCTCATGGCCTTTTCCATGTTCACTGTCCTCTGCACCATCGGCATCCTCATGTCAGCTCCTAATTTCGTCGAAGCCATTTCCAAAGACTTCTTCACTTAAACGTTGTGTGTGTAGCTTTTCCTGCAGCTTTTCAGAGTTTACTGCAGAGTCAGAGGTGTAGTTCagattgaaataaaatgaaatgtacacattttttccttaaataaatagaaactaAATCAATTAGGACATAGATTCTCGATTCTCAATTTGGTCTCCAAGACAAAACTAAATAAGCAAACTTTAGACCTCAATCtttgtgtaaatttcattttttttagctgaactGTTTAAAGCAAGCGAGTAATAAAGGGTAGAAATGACTTGCAGTACTGACAGTTGTCTGGTGTTTTGTAGTTAAAATACAATTCATTTCTGTTATTACTCTCAGTTTATAAGTGAAAGTGATCTAAATGTGCAGCATATTCATAACTATTcatataatcaattataatcaTAATAGCCTTCACACAGTAGCTGGACTGTAACCTGATACACACTGGTAACgctctgcttttgtttttttttattttatttctcttcatttaCATGACAAAGTAAAGAAATCAGCAATATTTCAAAGTATTTTCATGTATCAGAGTGAGCACTGTGACCTTGTATCTGGTGGGGATGATATGTCCAGTTTCATACGTTTTCAACCTTAACGCCAGCGAACACTGCTATAAGCAGCTATAAGTCATCATTAAGCTGCATAGGTCTgagattcctttttttttaattttcttcaaaGTTGCCTTTATGATGTAGAGTGacaaataaagatatttttctATATCTTAGAAAAATAAA

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0030054 cell junction cellular_component
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
K04809 CHRNA7; nicotinic acetylcholine receptor alpha-7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208726 lncRNA downstream 85875 5110114 ~ 5113268 (-) True G176336
TU208332 lncRNA downstream 352002 4840748 ~ 4847141 (-) True G176029
TU208331 lncRNA downstream 358450 4839988 ~ 4840693 (-) True G176028
TU208311 lncRNA downstream 462727 4732382 ~ 4736416 (-) True G176015
TU208248 lncRNA downstream 566358 4630348 ~ 4632785 (-) True G175967
TU208744 lncRNA upstream 84375 5304614 ~ 5407099 (-) True G176354
TU208989 lncRNA upstream 411587 5631826 ~ 5715020 (-) True G176556
TU209305 lncRNA upstream 862589 6082828 ~ 6167802 (-) True G176817
TU209304 lncRNA upstream 951959 6172198 ~ 6176354 (-) True G176816
TU209329 lncRNA upstream 964096 6184335 ~ 6188288 (-) True G176832
XM_034308425.1 mRNA downstream 2326 5157861 ~ 5196817 (-) True trip4
XM_026930779.2 mRNA downstream 65593 5081652 ~ 5133550 (-) True znf609b
XM_034308867.1 mRNA downstream 131652 5050059 ~ 5067491 (-) False gramd2aa
XM_026930656.2 mRNA downstream 131657 5047351 ~ 5067486 (-) False gramd2aa
XM_026930601.2 mRNA upstream 9087 5229326 ~ 5302351 (-) True LOC113536575
XM_026930602.2 mRNA upstream 9087 5229326 ~ 5302350 (-) False LOC113536575
XM_026930390.2 mRNA upstream 98113 5318352 ~ 5325458 (-) False cdhr5a
XM_026930389.2 mRNA upstream 98113 5318352 ~ 5325458 (-) True cdhr5a
XM_034308478.1 mRNA upstream 140179 5360418 ~ 5366235 (-) True sirt3
TU208736 other downstream 2325 5191964 ~ 5196818 (-) False trip4
TU208689 other downstream 8621 5139610 ~ 5190522 (-) False trip4
TU208693 other downstream 118248 5079817 ~ 5080895 (-) True G176307
XR_003403708.1 other downstream 1098717 4100371 ~ 4100426 (-) True LOC113536798
XR_003403707.1 other downstream 1099292 4099795 ~ 4099851 (-) True LOC113536797
trnai-uau_1 other upstream 70263 5290502 ~ 5290594 (-) True trnai-uau_1
trnai-uau_2 other upstream 93923 5314162 ~ 5314254 (-) True trnai-uau_2
TU209010 other upstream 476219 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other upstream 476219 5696458 ~ 5708265 (-) False LOC113536561
TU210154 other upstream 2261210 7481449 ~ 7483958 (-) False si:dkey-56d12.4

Expression Profile