RNA id: XM_026930905.2


Basic Information

Item Value
RNA id XM_026930905.2
length 1757
RNA type mRNA
GC content 0.45
exon number 2
gene id mespaa
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7799665 ~ 7801552 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTGGCCTGGGAACAGCTCCTAGAGGTGCCACCTCACACCTCATGGAGGATATATACAAGAACTCCACACTGCTAAAGCATCAGTCAGACTTGTAGCCTCTCCTCAAGACCTTTCCTAACTCTGAGCAACCATGGATGTCTCCAGCTCTCTTTTCCAGCTTCAGGATAACACAGAGTTTCTGTTCGACTGTGAGGGCCTCTTGGAGCAAAGCTTCTCTGCTTCTGACGCCGGCTACTACAGCGCCTGCAGCAGCCTCTCACCGGCTTCCTCCACTGATTCCAACTGTTTCTCTCCACCAACTTTCCACTATGGAACAGGACAGGAGAGCTTTCCAGAGACCTTCCATCCAAAAAACAGCAGTGAtcaagaagagaagaaaaatggcAAGGTGGCCAAGAGGACCGGACGACCACGGTCAAAGTTCCCTGGGCTGAAGCGCCAGAGTGCGAGCGAACGGGAGAAGCTCAGGATGAGGGACCTGACCAAAGCATTGCACCATCTCAGGACCTACCTGCCTCCATCAGTGGCTCCCTCTGGACAGACGCTGACCAAGATAGAGACTCTGCGCCTCACCATCCGCTACATTTCCTACCTGTCGGCTCAGCTGGAGCTCGGGCAAGAAGAGGTTGCTCAGGGAAGTCCTTCAGCGCCAATGCAGGCTCCAAACACGCCAGCTTTCTATGAACAGAGCTTTAACCAGGTGGCTCCACAAACATCAAGCTTCTCCACACAAGGGGTCTTCAATATGCCTTACTGTCAGaaTGCAGAGAATAGCAGCCTGCCTCCATCTCCAGCTCAGGATTATTGGATTCCCCAGCAGCAATATTGCTATTATGGACAGTGCTAACTGACATGGAGGACATTTCCACTGAAGGGCTATTCATTTGTGCAAAGTTGTTAATACTGTAAAGCTTGTAAATAGTGAATATTTTATAtccttatttatatttttgtaatttttacaactcattatttattgattgcaaaatatttggaaaaagtaaaaaaaaaaaaaaggttaaaaaacaattttcctctgtgcatttttttgtgcttttagcTCTGCTATCTGATATCCTTTATGggtttttaaatctaaatctctAACCCAAGCCCAATACAGCCTAATGATAGACAGGTGGGTGATGGTAATATCACATTGTAATTAGCACCTCGAAGGAAGGTCCCCTGGTGAGATAAAAATAAGAGAGGTAGGACAGTAAACTCATTCTCACCATGTAGCTCTTTTATGCTGCTGGTCAGTAAACAAAGTTGAGCATTGAACCCAGTGGGACGCCGCTCTGAAATGTAAGACTTAATATCTTGACTTCCTACTGAGCTGAATGCGGATTGCAGCGAATGTGAGCGCTGAGATTCACCCAGAGAGCTTTTTAGTTCTTGGGAAATcaaaatgatttacttaaacTTGAATGAGAATTTATGCAATTTTTATTGCTCAAGTCTGCCTGCAGCAATGCAGCTGCTCTTCTGGTGTCACTCGAGAGGTGTGGGACTATGGGACTGAGGATGggtctttaaaaaaacagcacaccTCCAAGGCGATAATCCTGCAGCTGTTCCCAGACACAACACTTCCTCTGTCCATCTGTGCTGTGTGTCTCGTCTACCTCCTGTCCCAGTGCTGTAATGTCAGGGCAGAATTAATCATTGTCTAAAatgagatgtttttaaattatgtattcTGACAAAAATGCTACATTAATAGAATAAACAGATAACAATTTAACgcaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210390 lncRNA downstream 44647 7707511 ~ 7755018 (-) True G177729
TU210396 lncRNA downstream 48859 7728913 ~ 7750806 (-) True G177733
TU210367 lncRNA downstream 122995 7675916 ~ 7676670 (-) False igf1rb
TU210347 lncRNA downstream 247915 7551522 ~ 7551750 (-) True G177691
TU210337 lncRNA downstream 290477 7508851 ~ 7509188 (-) True G177682
TU210491 lncRNA upstream 124741 7926293 ~ 7927058 (-) True G177807
XR_003403692.2 lncRNA upstream 469555 8271107 ~ 8275360 (-) True LOC113536653
TU210754 lncRNA upstream 522067 8323619 ~ 8324164 (-) True G178057
TU210939 lncRNA upstream 720249 8521801 ~ 8522085 (-) True G178208
TU210961 lncRNA upstream 791634 8593186 ~ 8593405 (-) True G178227
XM_034308693.1 mRNA downstream 35235 7676121 ~ 7764430 (-) False igf1rb
XM_026930589.2 mRNA downstream 35264 7676121 ~ 7764401 (-) True igf1rb
XM_026930275.2 mRNA downstream 128004 7659046 ~ 7671661 (-) False lrrc28
XM_034308415.1 mRNA downstream 128088 7659046 ~ 7671577 (-) False lrrc28
XM_026930278.2 mRNA downstream 128263 7659046 ~ 7671402 (-) True lrrc28
XM_026930903.2 mRNA upstream 7838 7809390 ~ 7810679 (-) True mespba
XM_034308973.1 mRNA upstream 16684 7818236 ~ 7845027 (-) False sv2ba
XM_034308972.1 mRNA upstream 16684 7818236 ~ 7845026 (-) True sv2ba
XM_026930641.2 mRNA upstream 16684 7818236 ~ 7837408 (-) False sv2ba
XM_026930256.2 mRNA upstream 190452 7992004 ~ 8124785 (-) True ntrk3b
XR_004579066.1 other downstream 210850 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other downstream 210850 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579064.1 other downstream 210850 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579063.1 other downstream 210850 7580434 ~ 7588815 (-) True si:ch1073-365p7.2
TU210154 other downstream 315707 7481449 ~ 7483958 (-) False si:dkey-56d12.4
trnar-acg_4 other upstream 440554 8242106 ~ 8242178 (-) True trnar-acg_4
trnar-acg_5 other upstream 441179 8242731 ~ 8242803 (-) True trnar-acg_5
trnar-ucg_7 other upstream 443097 8244649 ~ 8244721 (-) True trnar-ucg_7
trnar-acg_7 other upstream 445151 8246703 ~ 8246775 (-) True trnar-acg_7
trnar-acg_8 other upstream 446138 8247690 ~ 8247762 (-) True trnar-acg_8

Expression Profile