RNA id: XM_034308710.1


Basic Information

Item Value
RNA id XM_034308710.1
length 4204
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC113536772
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5407596 ~ 5418681 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCAGAGGGCGAATGCGGCCGGCTACATCCCTGCCGCACATTGCCCGGGGGCTTGTGGCTGCACCAGTACCCACACCTTCTACACCACGTGGGCCCTGTTTACTCGTGGCTCTGAGGCCCACAAATCTCGAACATGAGCGTCAGACCTTTTTCCAGTCGGACTATAAGTACGAGCCCCAGTTTGAGTACGCGTCACCCGAGCCTGTTAGTGTCCTGGAGAAGTATAAAGAAGGATCTGGACTCTTTCTTTCCCAGATACCTTGACATACCAGAAAGAGAAACCATTCCACCCCTGAATCCCACTCGCATCTTTTCCCAGGCAGTTAAAATCATGGAGTGTGTCCTGAGGAAGTTCGGCACCTACGAGAACTTTGAAGAAGTCACCGGAGGAAGTGTGTTGCCCAAGAGTCGAGTGTGGGCGACGGTGCGCAAGTACTTACAGAAAGAGGGCTGTGTGggtgagGTGGTGGTGTCTCTGTCTGATGAGCTCCTGTCTCAGGCCGTGATGATGGTGGAGAGCTGCAGGCCGACCTTAACCATAAACCTGTCAGGAGCACGGCAGCACTGGCTGGAAGGGATGCTAAGACACGAGATCGGTACACATTACTTACGCGGCGTGAATAACAGCATGCAGCCGTGGGCCACTGCCGTCGGAAGGAAGCAGTTTGGACTGAAGCCAGCCAATCCTACAGAGGAGGGACTGGCCAGCATTCACAGCGTGCTGTTGCGGAAGCAGCCCTTCTTGTGGCGAGCTGCTCTCCTCTACTACACCGTGTACCATGCAGCCAACATGAGCTTCAGCCAACTGTTCAGCTATATCGCTCGCTTCGTCCAGGACCCCGCGGTACGCTGGGAGTACTGCCTCCGTGCCAAACGGGGACAAACGGACACCTCAAAACCAGGCTGTTTCAGTAAAGATCAAGTCTACCTGGATGGGATCCTAAGGATTTTACGCCACAGGAGAAACATCGATTTCAAGATGTTAACCTCGCTGGGCAAgGTGTCCTATGAAGATGTGGAAAGGCTTCGTCATCTTGCGGTCCTGCGGAGAACCAGGATCCCGCACTTCATGCAAGACCAAGAACGTTACCTGCAACAGCTGGACCACATCGTCGTGACTAATGAACTGAACGATGCTGAGCTACAAGAGCTCATTCCATGAGGATGAGGGTTTGAATATACAGGACCTTTTTGATTATTTGCTCATTTCCAGGTGCGActcagtaaaaagaaaaataggatTATTGATTTAAAGCCTGGATTATAATTTTCAGCATCTGTGAAAATTCACACAGGACAAAATCAGTTTTAATCAAGTGATTTACTCACTTATTCATATTGTTtcaatgttaacattttttccAACAGTACCAACACATACCAACATGTGCGTTTACAGTTACAGAGATTATCACCAATTTCTCTGAACCAACAATATATCAGACATTTGGAACCTCtgaaatattatacaaatattgTAGCCTAATTATTGGAGGTCAGTGGAAGATCAAGGGTATCTTCATTACTTTTTATAATTAAGTTGCCATGATATTTCAAAGAAACATGTAGACAAGCACTCAAGTAGCAATTCGCTGATTTCTATACACACTTCTTTTACCTCGTGTTCTGCGATAAGCACTGCATTTTATTGTTGTTCCTGTGATGCTGTATTAGTCACTGCTAGAGCTTTTTAAACcactgtcagtatttatgcaagtatttattctttttttttttttacctcatgtATTCATAATGAAAACTGAATGTTTGTGATTTTAGCTAAATAACTCCATTAGTTATCattagggatgcatcgataccatttttaaatatatatgtatttttggACTTGCCGAAACTGATACCGATACCAAAAcgagtaacctacttagtattacACAGTTAGGGGTGTCATGAAAcatagctctgtttatgttggttgtGGCCCTGTGCTGAGtttgatgtttaaaatgttatggtgtttaaatagtatttttaatAGAGAGCACATGGGCTGCCAACCTGAGCGTAGAGAACAGTATCAGCAAGCCTGGGAATTAAAAATGAGTTCAAGGTGCCATGAATTGCACCTAGACTCTCAAGCAAATTGTAGACCCTGGTGAAAGGAAGCATGCATATCTCAGTGCATCATATCAGTGCTTGCAGAACTGGCGTGTGTgcctcagtgctcagtgctcgcagaactgaagtgctctcgcATGCAGCAGTTTTTCTGCACACTAGCTTCAACGCTCCACGCTCGCACATACCTTTGTGTGTGCATAATTCATGGTTCCTTGCCCTCATTTTAATGAGCACTCTCGCTAATACTGCTCTGTGCGCTCAGGTCAGCCACAATCACGCTCTCCATTAAGATACTCTTTATATGCCacaagatgttttatcaggttccTTGTATGGAATGCtgcaggaagatgctgtagATCCTCcacttgatattttcacagagtacagtttgcagtctgcatttctttgattgccatcattaatcatgaaatacatcCAGATTGCTGTCATTTTCTGGCATAGCGTGACAAATGTACACTAGGCTTTACGTCTCATTGTATCCTGCAGTATTGGATAATGGCATTTTTTACGAGTACCAGCAAATGAGCACGGCATTGACCAAAACTCGATTTAGTATcagtatcgatgcatccctagttATCATACGCCTTAGTATCTCAAAAAGGGCATCAATGATCACTAGAAAGTGTCAAATGACATTGAGTGGtcacatgcattaaaaaaagtgcaattgaCTTGACTAGTATTTTATATCAGGACAGGAAACTGGCATTAATTATagtaaaatatggaaaatacagTCAGGCTGTGTTTAGAGTCGAATGTGACACGTGTGCACGTGTAGGCCATTACCACTGCAGCCTCTGGCTCTTAATCCTGTTCACAAGTCGGCTACCTGCAGCTCCTTCACTGTTGTACATTCACACAAGGCATGTGATGGACTCAGGATGAGATACAACAAAGTGATGTGGATGTGCCTTCGATGGGTTCAGAACTCATCTGTAGAGTCATCTGTTTGTAAAAAGCTTGAAATTACATGTTCAAACTCTGTAGTACTCATCGTCTTCTGTATTGCATGAATATTGCACATTTCATTATCTTTAAATAATCTGCAATTttcagattatttattaaaacgCTACACTGAACTCATGGCTGTTTCTGTTTTATGGTAATAAAGATGGGAAAGGTGAAGTGTATTAACAAACAACCCAACTTCTCAGGGTTATTGCATTGTATAGTTGAGTGCAATCCTGCAACAAGATAACCATAAGGCTAAATCCACATtaataaatgctgaaaaaattacataatttaaatATGCTTAATTTTCACTGACCTCTCAATTTGTATATATGacaattttagtttttaatatcaatcaggtaatggatattaaaaaataaaattatgtcatatatacaaattaaataataataaaaaaaataaaaggtattTACAAAGGGAGTGTGTGCAGCCTCAAAAGTAATACACCAGGGAAACAGGATATGTCTGAGGGGACTGAGAacaaaaggaaaatatttttgtatttatttaaatgataaaatattccTTATGGGGTATCAATAATTTCAGGAcatattttaaagagaaaattcaatttttaaacaaaaaggaTTATGgttaaaacaaagataaatattCTCCTACTTTTGGAATAATCTTGtgtcttgtttattttataccatCATGTGTACTCATTTTTAGGACAGGTGCCAATAGTTCTGGAGGGCACAGTACAGTGAGTGGGTGATTTATGGAGGGGTGAAAATTAGGATATCAGGTTGGAAGGAATTATAAAGACAGCACAACTGTATGagttattagaaaataacttacttttttactattaatatcATACATATAATATCATAACATTTTTGtcaaatgaaaaaacatttgaagCCCAACAGACTATACGGTTGCTggtaattaaattcattttcattttgtcctaCAGGTATGCAAACCTTCCACACTTGACAGTAGCTAGATAGTATTACATCATGAAGGGGAATCAATTTTTATGAAGAGAAACTTGAAATGCAATATAAAATGAGGAATACTTTTTACTTCGCTTGATCGGCTTACTAAAAATTGTGTGGAAATTGGTATTTAAAGCCTCAGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208744 lncRNA downstream 497 5304614 ~ 5407099 (-) True G176354
TU208726 lncRNA downstream 294328 5110114 ~ 5113268 (-) True G176336
TU208332 lncRNA downstream 560455 4840748 ~ 4847141 (-) True G176029
TU208331 lncRNA downstream 566903 4839988 ~ 4840693 (-) True G176028
TU208311 lncRNA downstream 671180 4732382 ~ 4736416 (-) True G176015
TU208989 lncRNA upstream 216121 5631826 ~ 5715020 (-) True G176556
TU209305 lncRNA upstream 667123 6082828 ~ 6167802 (-) True G176817
TU209304 lncRNA upstream 756493 6172198 ~ 6176354 (-) True G176816
TU209329 lncRNA upstream 768630 6184335 ~ 6188288 (-) True G176832
TU209358 lncRNA upstream 845092 6260797 ~ 6261240 (-) True G176855
XM_034308478.1 mRNA downstream 41361 5360418 ~ 5366235 (-) True sirt3
XM_026930390.2 mRNA downstream 82138 5318352 ~ 5325458 (-) False cdhr5a
XM_026930389.2 mRNA downstream 82138 5318352 ~ 5325458 (-) True cdhr5a
XM_026930601.2 mRNA downstream 105245 5229326 ~ 5302351 (-) True LOC113536575
XM_026930560.2 mRNA upstream 4291 5419996 ~ 5446722 (-) False nqo1
XM_034308721.1 mRNA upstream 4291 5419996 ~ 5446719 (-) False nqo1
XM_034308720.1 mRNA upstream 4291 5419996 ~ 5445156 (-) True nqo1
XM_026930559.2 mRNA upstream 4291 5419996 ~ 5429433 (-) False nqo1
XM_026930558.2 mRNA upstream 4291 5419996 ~ 5429430 (-) False nqo1
trnai-uau_2 other downstream 93342 5314162 ~ 5314254 (-) True trnai-uau_2
trnai-uau_1 other downstream 117002 5290502 ~ 5290594 (-) True trnai-uau_1
TU208736 other downstream 210778 5191964 ~ 5196818 (-) False trip4
TU208689 other downstream 217074 5139610 ~ 5190522 (-) False trip4
TU208693 other downstream 326701 5079817 ~ 5080895 (-) True G176307
TU209010 other upstream 280753 5696458 ~ 5708265 (-) True LOC113536561
TU209012 other upstream 280753 5696458 ~ 5708265 (-) False LOC113536561
TU210154 other upstream 2065744 7481449 ~ 7483958 (-) False si:dkey-56d12.4
XR_004579066.1 other upstream 2164729 7580434 ~ 7588815 (-) False si:ch1073-365p7.2
XR_004579065.1 other upstream 2164729 7580434 ~ 7588815 (-) False si:ch1073-365p7.2

Expression Profile