RNA id: XM_026931656.2


Basic Information

Item Value
RNA id XM_026931656.2
length 3365
RNA type mRNA
GC content 0.45
exon number 20
gene id cp
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17534444 ~ 17545067 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAGAGCCTGACATCCAAATCACAGAGGAACAACATGGGGAGGTTGCACTGGAACCTGATTGGGGTTTTGTGCTGTGTTGGAACTGTGTCCTGTATAATAAGGGAATATTTCATAGGTATTAAGGAGATTGAGTGGGATTATGCACCTACTGGGAAGAACCAGATTCAAAACACAACACTAGAGGAAGATGAACATGCAAGGACATTTTTGGAAAATGGTGACCTTAGGATTGGCCGTGTGTATAAGAAGGCGGTGTACCTCCAGTACACAGACCTTAGCTTCAGGCAGGAGATAGAGAAGCCCAAATGGTTGGGCTATGTCGGGCCTATCATCAGTGCTGAAGAGGATGACATTGTGGTTGTGCATTTAAAGAACATGGCTTCTCGTGCATACACCATTCATCCCCACGGAATTACTTACAATAAATCTCATGAAGGGGCATGGTACCCTGACATGACAGGTAAAGAGGAGATCCTTGATGATGCTGTGGCTCCTGGGAAGATGTATAACTATATGTGGACGCTGTCTTCCTCTCATGCTCCTGGAAAAGATGACACGAACTGCCTGACCCGAATATACCACTCTCACGTCAATGCCCCAAAAGACACTGCCTCAGGACTCATTGGGCCACTTATTATCTGTAAAAAAGGTACTTTAGACATACATGGTGACAAATCAGGCGACTACTTATACACCCTCATGTTCACTGTTTCTGATGAAAACCTCAGCTGGTACCTGGATGACAACATCAAGAAGTACTGCAAAACACCAACCAAAGTCGACAAGGATGATGAGGACTTTCAGGAGAGCAATAAAATGCACACGATTAATGGTTACGTCTTTGGCAACTTGCCAGGCCTGAGCATGTGCATGGGCAATAAGATTCAATGGCACCTTTTTGGGATTGGCAACGAGGTGGACATCCATTCTGCGTTCTTCCATGGTCAGATCATAAAGAACAGACAGCACCACACAGACACCATTAGCCTCTTCCCAGCTACATTTGTCAGTGCAGAAATGGAGGCGGACAACCCTGGACAGTGGCTATTGAGCTGCCAGGTTAATGATCACCTGGAGGCGGGCATGCAGGCAATTTTTGAGATCAAGAAATGTTTCCCGGCCGTGCATAAGCCCAGACCATTTGGTGAAGTCAGACAGTACTACATTGCTGCCGAGGAGATTACCTGGGACTATGGACCTACACAGGTCAACTACTACACTGGCATTAAGTTACAGGATGACAGTATGGCTGGCATATTCTTTAATAACCGTAAAGATCGCATTGGAGGGAAATACAAGAAGGTCCAGTACGTGGAATACACAGATGACACCTTTACCAAGCACAAAGAGAGAACACCTGAAGAGGAACACCTGGGCATTCTGGGTCCAATCATCAGGGCAGAGGAGGAGGACACCATTAAGGTCACTTTTAAGAATAAAGCAAGCCGACCTTACAGCATTCAGCCTCATGGAGTACAGTACAACATTGAAATGGATGGCACACTTTACCACAATGTTCTAGAAGAATCGTATACTGCGAAAAAGCTTAGGGAACTCAAGAAAGAAGCAAGAATTGTTGAACCTCTTCCTGCTGCCCTGGTACGTCCTGGCGCTACCTATAAGTATGAGTGGGTGGTGCCTAAGGATGGAGGTCCGACTGAAAACGATCCTGACTGTATCACCTACCTGTACTACTCTGCCGTGGACCCGATCAAAGACACCAACTCTGGCCTGGTTGGACCTCTCCTAATCTGTAAACCAAAAACCCTCAAAGCAGGCAAACAAAAAAATGTGAACAAAGAATTCCACCTGCTTACTACGGCTTTTGATGAGAACCTCAGTTGGTATTTAGATGAAAACATTAACAGATTCGCAAAACAACCTAATTCTGTGAAGAAAGATGATGAAGATTTTCAGTTGTCTAATAAGATGCATTCAATCAATGGATACATGTATGGAAATCTCCAAGGCCTGAAAATGTGCAAAGGAGACAAGGTTTCTTGGCATCTTTCGGGTTTGGGATCAGAGGGGGACATTCATGGACTTTACTTCCATGGCAACAGGTTCCTCTACAGAGGAACAAGGAGAGACACCATCACCGTATTCCCTCATGTCTCACATACAGTCATCATGGAGCCAGACAGCATGGGACAATTTGAGGTGACATGCAAGAGCGCTGATGATAACCATGCAGGTATGAGAGCGAACTACGTAGTGGAGAAGTGCAGTTTCTGGAGCAGGCAGTCAGAGATCATGCTCCATCAGAAGAAATATTACATTGCTGCTGTAGAGATGGACTGGGATTATTCTCCCAGCCGCACCTGGGAGGAGAAAATGTTTCACAACCTTAAGGATAGCCCAGGTAACACCTTCCTTAATAAAGGGGGCAAATTTATTGGCTCCAAATATAAGAAGGTCCTGTACAGAGAGTACACTGATGACACGTTCACTAAGCCAAAGGACAGACCTGCTGATATGGAACACTTAGGAATTTTGGGTCCTATGATTCATGGAAATGTGGGAGAGAAAGTAAAGGTGGTTTTCAAGAACTTGGCCAAGAGGCCATACTCTATACATGCACATGGAGTAAAGACGGACAATCCTGAAGTCACTCCAACTCAACCAGGTGAAACTCAGACATACACCTGGTATATTCCTAAGACTGCTGGCCCAACGTCTGAACAGGAGGAATGCAATGTTGGAGCTTACTATTCAAGTGTAGATGTTAACAAGGATTTGTACAGTGGACTGATTGGGCCGCTGGTAATCTGTCGGAAGAGTCTGCTGAGGACATTGGGGCTAAAGAAAGAGATTGAAGAGTTTGCATTGCTGTTCATAGTGTTTGATGAGAATAAGTCCTGGTATTTGGAAGacaacataaaaacacatgTGAAAAATCCTCCCAGTAATTTACAGGAGGATGACGAGTTTATTGAAAGCAACAAAATGCATAGTATAAATGGTCTGGTCTTTGGCAACCTTCATGGGCTGAATATGAATGTGGGAGATAAGGTGTACTGGTACCTGATGGGAATGGGAACTGAAatagacatacacacagcacatttCCATGGCCACAGCTTTGAGTACAAGGTGAGTGGCGTCCATCGCAATGATGTGTTCGATTTATTCCCCGGCACGTTCCAGACAGTCAAAATGCGCCCTCAGTACCCAGGCACCTGGCTCCTGCACTGCCATGTCGCTGACCATGTGTTGTCTGGCATGGAGACCACATACACAGTGAAAGAATCCAAGGGTTAGAGCTGAAGAACTCCAACACACGACcatttttaagatttaataCCTACTGTAACGCCAAAACCTTTCACATATTATGAATAAAACTTATGGTAATTAAGTGTA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005507 copper ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K13624 CP; ceruloplasmin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216632 lncRNA upstream 83708 17450457 ~ 17450736 (+) True G183032
XR_004579106.1 lncRNA upstream 111124 17416730 ~ 17423320 (+) True LOC113535983
XR_003403652.2 lncRNA upstream 111124 17416730 ~ 17423320 (+) False LOC113535983
TU216612 lncRNA upstream 111225 17416770 ~ 17423219 (+) False LOC113535983
TU216605 lncRNA upstream 123019 17408545 ~ 17411425 (+) False kcnh1b
TU216676 lncRNA downstream 32575 17577642 ~ 17583785 (+) False G183058
TU216673 lncRNA downstream 32673 17577740 ~ 17580114 (+) True G183058
TU217213 lncRNA downstream 179696 17724763 ~ 17725260 (+) True G183478
TU217332 lncRNA downstream 343060 17888127 ~ 17888353 (+) True G183566
TU217344 lncRNA downstream 357718 17902785 ~ 17902984 (+) True G183578
XM_026917998.2 mRNA upstream 1766 17507207 ~ 17532678 (+) False LOC113528887
XM_034308402.1 mRNA upstream 1766 17507225 ~ 17532678 (+) False LOC113528887
XM_026917744.2 mRNA upstream 1766 17509244 ~ 17532678 (+) True LOC113528887
XM_026917828.2 mRNA upstream 1766 17509244 ~ 17532678 (+) False LOC113528887
XM_026917910.2 mRNA upstream 1766 17509244 ~ 17532678 (+) False LOC113528887
XM_026929958.2 mRNA downstream 53397 17598464 ~ 17636395 (+) False anos1b
XM_034309006.1 mRNA downstream 53397 17598464 ~ 17636395 (+) False anos1b
XM_026927180.2 mRNA downstream 93722 17638789 ~ 17645112 (+) True senp5
XM_026927190.2 mRNA downstream 93722 17638789 ~ 17645112 (+) False senp5
XM_026915944.2 mRNA downstream 103868 17648935 ~ 17669132 (+) True phka2
TU216628 other upstream 89385 17439796 ~ 17445059 (+) False LOC113536271
XR_003402991.2 other upstream 318561 17196280 ~ 17215883 (+) False LOC113528769
trnak-cuu_26 other upstream 504500 17029872 ~ 17029944 (+) True trnak-cuu_26
TU216450 other upstream 611522 16913258 ~ 16922922 (+) True G182877
TU216336 other upstream 949501 16583303 ~ 16584943 (+) True G182819
XR_004579126.1 other downstream 53397 17598464 ~ 17636395 (+) True anos1b
XR_004579060.1 other downstream 127104 17672171 ~ 17751502 (+) True mcf2l2
XR_003403373.2 other downstream 127104 17672171 ~ 17749291 (+) False mcf2l2
TU217273 other downstream 228646 17773713 ~ 17781813 (+) False ect2
TU217312 other downstream 250378 17795445 ~ 17796619 (+) True G183549

Expression Profile