RNA id: XM_026933632.2


Basic Information

Item Value
RNA id XM_026933632.2
length 1228
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC113538485
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16211346 ~ 16233837 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTAAAAAGTACCCAGGAATGCTTAAACCCAAAGAATTGAGTCATTGTTGAAAAAGACACTCAGTCTTCCATTAACTGTCATAAATGTTCCACCTGCTCAGAACAGCTCAGAGTCTCTGTTGCACCATGGCACTCCTCTCACTGTTTCTGCTCACCTCTCTCTTGTGTCACATAGGACACTGTGCTTACGTCAACATGGGCATAGTGAACGGCTCTGTGGTCAAAGCACATTCCAGACCCTACATGGTTTCTGTCCAAAAAGATGGAAGTCATACTTGCGGGGGCTTCCTCGTGTCAGAGAACTTTGTAATGACGGCTGCACACTGCTGGGAACCAGGGGTGAAGCTGACGGTTGTAGTGGGTGCACATGAACTGAAAAAGAACAAGTCAGCTTTGCGCCATATGGAGGTGAAGCTTTACCACATCCATCCGATGTTTGACTCAGAGAATCTGCTCAATGATATTATGCTGCTGCAGttgAAAAAAAGCATCAAAAAGACCGAGAACATCAACTGGATCTCCATACCAAATGAAAAGAATCAGGGCATTAAGGCCAAGCAGGTCTGCAGCATAGCAGGCTGGGGGAAACGATCTGAAAATGGTGGAGGAAGTGATCATCTCCTGGAGGTCGATGTCACTGTCATTGACACAAAGGTCTGCGAGAAATCCTGGGGAAAGCCTTTTCATGTCTCCAGTTTGGTGTGTACTAAAGGTCACGGAGGGTTTTGTCAGGGAGACTCTGGAGGTCCTTTGGTGTGTCAGAACAGAGCCGTCGGTATTGTTTCATTCTACGATTCTAAAAACTGCAAATCACCAAATTTGCCCTATGTCTATACCAAAATTTCAAACTTTGTGCCTTGGATTCATTGTATTTTAGGACGCAAGGAGTGAGCACttggttattattttatatttggtgTTTAAGTCTCCCTCCCCATCCCACCCCCCATTTTTTCATGAAAGAAACTTAAGCCAGCATGTGGGTTTGTATTTATCTCTTGTATATGGGGCAGCTTTCTGTCTATACTCTGCCTACTCTGCCAACCTCACAGGGACTAGATATGTGTTTGCTCTCGAACCAAATAAAATGTGACAGTAAAATAAAGTCATTGTAAAACAGAGGAGCAGCAAAAGAACTTCACAAATCATTTTGTCACTGTGATGTTACGTATATGTAAGCTTGTCACGATtaagaataaataaactaactaaaaatgactaaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215642 lncRNA upstream 220503 16006054 ~ 16009235 (+) True G182190
TU215562 lncRNA upstream 239328 15988630 ~ 15990410 (+) True G182116
TU215560 lncRNA upstream 241757 15938100 ~ 15987981 (+) True G182115
TU215618 lncRNA upstream 336211 15893292 ~ 15893527 (+) True G182167
TU215602 lncRNA upstream 343913 15879531 ~ 15885825 (+) True G182152
TU215985 lncRNA downstream 26221 16260058 ~ 16260316 (+) True G182483
XR_004579080.1 lncRNA downstream 474788 16708625 ~ 16720748 (+) False LOC117598408
TU216395 lncRNA downstream 479876 16713713 ~ 16725527 (+) True LOC117598408
XR_004579047.1 lncRNA downstream 618571 16852408 ~ 16857137 (+) True LOC117598387
TU216484 lncRNA downstream 726822 16960659 ~ 16961299 (+) True G182906
XM_026925078.2 mRNA upstream 21918 16179542 ~ 16207820 (+) True fgf22
XM_026927396.2 mRNA upstream 107629 16087204 ~ 16122109 (+) True hcn2b
XM_034308630.1 mRNA upstream 144605 16074562 ~ 16085133 (+) False bsg
XM_026913508.2 mRNA upstream 144605 16074565 ~ 16085133 (+) True bsg
XM_026946320.2 mRNA upstream 166628 16056924 ~ 16063110 (+) False fstl3
XM_034308470.1 mRNA downstream 13890 16247727 ~ 16249191 (+) True LOC113538695
XM_026934012.2 mRNA downstream 13890 16247727 ~ 16249191 (+) False LOC113538695
XM_034308828.1 mRNA downstream 21210 16255047 ~ 16256782 (+) True LOC113532318
XM_026923653.2 mRNA downstream 21210 16255047 ~ 16256782 (+) False LOC113532318
XM_026925202.2 mRNA downstream 39131 16272968 ~ 16275203 (+) True LOC113533225
XR_004579090.1 other upstream 1518011 14708927 ~ 14711727 (+) False pdzk1ip1
XR_004579085.1 other upstream 1582916 14622543 ~ 14646822 (+) True si:dkey-121a11.3
TU214729 other upstream 1635123 14589919 ~ 14594615 (+) False ankrd29
TU214656 other upstream 1666772 14561690 ~ 14562966 (+) False LOC113540185
TU214440 other upstream 2055520 14165026 ~ 14174218 (+) True G181175
TU215983 other downstream 21226 16255063 ~ 16255852 (+) False LOC113532318
XR_003403746.1 other downstream 346399 16580236 ~ 16580303 (+) True LOC113537281
TU216336 other downstream 349466 16583303 ~ 16584943 (+) True G182819
TU216450 other downstream 679421 16913258 ~ 16922922 (+) True G182877
trnak-cuu_26 other downstream 796035 17029872 ~ 17029944 (+) True trnak-cuu_26

Expression Profile