RNA id: XM_034308939.1


Basic Information

Item Value
RNA id XM_034308939.1
length 4872
RNA type mRNA
GC content 0.43
exon number 10
gene id arid3a
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19607447 ~ 19638191 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTTGTCAACCAATGATTTGACTCAACGGCTGTGGACACACCTCAGATTAGTCAAAGGTGCCTCAATACGACCAAATTACCTCATATGTTCAGATCAAACCGAATTAACCTTGTGTTAGCTTGCTACATGGAGGTTAGCCGTTAAAGTGTATTTCGAGCGAGATTAAATATTGAAGAAGCGTAGCGCGTCACGAGCGCCTTGTTTTCACGGGGAAATCAGGAATGTTTCTTCCGGTTCCCAAGAGTGCAAACAACAAAACGGAAGCTGAATTGCCTAGTAGCAACATGATTCGACTCGGTTGCGATGGTTACGTCCGAAGacgacgaagaagaagaagaagaagaagtgtacACACTGGCGGTGCGCAGTAAACAGTATGTCTGAGCACTAGTCAGGCTCTTCCCTACTGCTGCATGGCTTGCTCGTGTACTATTTTGACACACAACTTACTACGATAGTAAGCGGTTTTGGACAGCAGATATATTTATACAGCCCTGCCCTATTGGCCAGCACGAACCGGCTGACAAAGCTTCTACTCCAGcactaatattaaaaataagagGTCGTGTCAGCCCTTTATGGAGGAGTTTGGAGGCATTTTAAAGgCTCTGATAGAGCTAGCCACTCCGCGTCGGGGGGAGCTTCTCCTCTCTAAAGCCTGCTTCCGTCTGTAGTGGCGTACAGACGCAATCTTAATCAACAATCTTCAGGTTTAAGTAGAAGACGTTTCTAGGAGTTCTTCTGTGAggctgtttctctttttttagcaTTCACTTTGTTCTTGAGTGAAAGCGCCATCTGTTAGAATCAAGTGTTTGGAAACCTGGTGCTTTTCTGGTGAAGACGTGGGCAAAGGAGGCGATATTTCAGAGCGTCCTGGTTGCCTGGAGATGAAGCTGCAGGCAGTTATGGAGAACTTGCACAGGCAACAGCGGGCCAGGCTGCTTATGGAGATggagcagcaacagcagcagacGGGTTCGTGTCAGAGCTCCTCCCCCACAGGTGAGGAGCTGAAGCTAAGCTCCACCTCAGACACAGAGCGCACTCAGATAGCGGCTCTGGCAGCCATGAGGGCCGTGGCTGCCGGACTGCAGAGAAGGCCAATGGCTGACAGTCCTAGGTCAGAGCACAGCACCGCCGGAGAGGCGGATGAAGTAGAaggagatgaggaggaggaagagggagaggagCAATATAAAGACATGATGGGATCTGACGAGGAGGAGCAAATAAAGCAGAAGTGGGACGAGGATGACTTTGAGGGGGAGATGGAGGAAGACTATGATGATGATATGGCCGAGGAAGGCCTGCAGATGAGCCGTGAGGCCATCACCCCGGGCCGAGGCATCCTGCTGCTGCCTCATCGTCAGCTCCATCCTCAGTTGCTGAAGGCCCGATCAGGGCTTGAAACTGAACCGCGGGCCTCAAGTTtcccagctcctccctctcaAGGCCAGCAACATGGCCAGGACCACACCGACTGGACCTATGAAGAGCAGTTCAGACAGcTTTATGAACTGGACAGCGATCCCAAGAGGAAAGAGTTCCTGGATGATTTGTTCAGCTTCATGCAGAAGAGAGGGACACCAGTGAACAGGATCCCCATCATGGCCAAGCAGGTGCTGGATCTGTATATGCTCTACCAGCTGGTGACGGAGAAGGGCGGCCTGGTGGAGGTCATCAATAAAAAGTTATGGAGGGAGATCACCAAAGGTCTGAACCTGCCCACGTCAATCACCAGCGCTGCCTTCACTCTCAGAACACAATACATGAAGTACCTTTACCCATATGAATGTGAAAAGCGGGGTCTCAGCAACCCCAATGAGCTCCAGGCTGCCATAGACAGTAACCGGCGTGAGGGACGGCGCCAGGCTTTCGGCGGCTCCCTTTTCACCTACTCGCCCAATGGGGCTCCCACCATGCTCTCCTCCCCTAAAATCTCTATGCCCAGCATTGGTATGGCTGTGGGCACCAGCGATACCTCACTTTCCTCCGCTCAAAAGGTCAAGAAGGAAGATGATGTCAGTCAGTCTCTGACTGCACAGGCCAGCAGATTGCCTGGCACTCTAGCTGCTCAGTCAGTGGCAGCAGCTCAGGCAGTGGCGGTGCAGGCTGCCATGGCCGCTCAGGTTGCTGCACTTGAGCAGCTGAGGGAGAAGCTGGAATCCGGCGAGCCACCCGAGAAGAAGATGGCGCCTCCTACAGAGGACCACCAGCGGCTCCTGCAGAGGGCACTGCAGCAGAACCTGCTAGCTATGAGCACCCAGATGCCCATGAACATCCGCATCAACAGTCAAGAAAGCAGACAGGATTCTGCCCTTAACCTCACCATGAATGGCCTGAATAGCATCAGTATGTCAGTGGAACTCAACGGGGTCGTCTACACTGGTGTGCTTTTTGCTCAAGCTACTGGTTTAAACTCCTCAGGAACAGCAAACAAAACGGCTGGAGAGCGCAGTAACTCTCAGCAGCTTCCTTCCTCTCAGACGCCTACCTCATCCAGCTCCACCAACCCGTCACCCTAAACACCTCACAACCTCCCGGTCTCAAAGCTAGCTAAAGCCAAAAATCAACCTCATTTTCTAGAGcctatgccaaaaaaaaaactagcagtAATAACAAGTTTCCAGACCACTTGACGTACACTATCTCAGgttctcttttcttttattcactCTTTTGTTCAGTAGCCAAAATGAACTAAAAGAGTACAGCAACAAAAGAGAGTTACTTGGTTAAAACagacatataatatatatacatatacaaatatgcaaaacctgtgaataatttatttcttttctggGTACAAAATACTTGGAATTAATAGAGAAGTTGAATCTAGAAATGGTAGCACACTGTTTACACACTTTAATCACCTCCTGACTGACAATGAAACTTCTCggaaaacattttatgaatgaatgagtgttaTAAAACCATAATGCAAATAAGGTTCTAAAACTATACATGTATGGTCCATGTATATCTAGAGTGCCTTGCTGAACATCTCttcaccagtttttttttttttttttttggtggtatGAGCCACAAGAGACTCAGTGAAACCccaacgatgatgatgatgaatgtgtgCAACTTCATGGCTGTTTTCTGATACCGCATGCTGAGTGCCTGACCACTTGGCATTTTGGAAAGAATAGTGGAAACCATTTTCGAGTCTTCAGAAAAGAAATgccaattattttatttgtaaaataaatctcattGAATAGACACATTATTTAGCAGGGCAGAAGATAATActgcattataaacattatggAGGATATATTTTTGCAAGCCAGAGTATACATGTCTGTGTATATAAACCATGTTTCAGATTTGAAAACTCTTTTGAACAGGTTGAAGAAAAACACGGCTAAAAAAGGAATTTCGAAAGGTGTTTATTAAGTGGCCTagacaagctaaaaaaaaacaacaaaaaaacagttgtcTATAATTCACCTGTTAAAGATAGGAAATGCAAATGAGTGTAAAGGATCCCGTCTGCTATTAATCGCTTTGTTTAGCTAATGAGCAAATATTCAGGAAACACCTTTGTTGTATCATCTAGAATCAATAGAAGGAACTTACTTGTTcctctgtatttaaaatattatattttaagcaAAACCACATACTCCTTGAATATAATAGTCTGTTTCTACAAAATATTTGTTATACAGACACTTACAAAATTTGccaaattcatatatatataatatattcattgTTATTATGCAGATTTGTTGTTGTGCAGAATTCTATATATTTCCATAATTGTCTCATTGAACACAGAAATCCTAAGCACACATCATTTGGTTCCCTTTTTCAGGGCTGAAAACATTATATTTGAGATCTACATGAAAAtatactcctttttttttcttctcactcGCACAATAGATCTTAAAAAAGATCTATTCATTGGGTTCAGCGGTTCACTGACAGTGTGTGAGCTGAATGTGGCATATTTCAAACTGTAGGCTTAATTATTCTGCATTCATTATGGCAGACAGTTAAACATCACTGAGCTAGCACTGAAATCAGTATGTTTTATCCCATAATGAACAGCTTTGACCTGAAACTTGGTTACAGCTaacctttttgttgttgtgaatTGTCGAGTGCATTACACAAACTCACAGAGACGATGTGTCAATCAGAAAACAATACTTGTACACGGTTTCTTCCAGGATTATGCATTATTCTGATTAAGTGTTGTCATTTGTGACTGGATTTTGGGGACATTATCTAATCATTATGTGGTTGTGATGCTTTTTGTTGTACTAACTTTAGTGTTACActatattcagagtcaggtaGCTTATGGATTTTACATTTGACCTTCTATTTCAGGTATATAATGGTATGGCTAGCTTTCTACCACAATGAAATAGAGAAATTTAACAGTTCCTATAAGTAGCATTTAAGCTTTCAAGACGCACTAAAGCTGGAAAAGTTAAATGATGGTAATAATGCTATGTTATACGTGTCCAAAACTTCAAAACGggcaatatttcatttttgtccttGAGCTTTTGACGGCGTTTTCTCGCTCTTTTTCAGCCTTAGCTCTACTGTATCTTATACGTTGGCTCATTTCTTCTTTGACATTAATTCACTGGCGTATAGGTTGCTTCAGCATCTGTGCAAGTGAAGGTGTCTGTTATTTATAAGAAGTAAAAAGCTTTTCATTATCAGGAAGTAACAACGTACCTCATAGCTTTCTAGGCATGTTATTAGACTCACTCTATCTACCTCACACATTCATTTTACTCAGCTCATGCCATCAGGCAACACCATTAAATCAACCACTCTACACacgcagaagaaaaaaaaaaacaggtgtgaCTGGATA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218491 lncRNA upstream 4808 19548663 ~ 19602639 (+) True G184614
TU218481 lncRNA upstream 52629 19553977 ~ 19554818 (+) False si:ch73-40i7.5
TU218492 lncRNA upstream 57121 19548663 ~ 19550326 (+) False G184614
TU218480 lncRNA upstream 61945 19526877 ~ 19545502 (+) False LOC113546543
TU218362 lncRNA upstream 119669 19486372 ~ 19487778 (+) False smim7
TU218499 lncRNA downstream 22901 19661092 ~ 19664491 (+) True G184617
TU218615 lncRNA downstream 65444 19703635 ~ 19704250 (+) True G184718
TU218741 lncRNA downstream 170522 19808713 ~ 19809254 (+) True G184823
TU218759 lncRNA downstream 205856 19844047 ~ 19844800 (+) False LOC113534304
TU218810 lncRNA downstream 283280 19921471 ~ 19947483 (+) True G184882
XM_026922559.2 mRNA upstream 1833 19599263 ~ 19605614 (+) True LOC113531697
XM_026922570.2 mRNA upstream 10055 19587328 ~ 19597392 (+) True r3hdm4
XM_026922544.2 mRNA upstream 22708 19555712 ~ 19584739 (+) True zgc:172302
XM_034308397.1 mRNA upstream 52478 19550646 ~ 19554969 (+) True si:ch73-40i7.5
XM_034308909.1 mRNA upstream 59235 19543469 ~ 19548212 (+) True LOC113546543
XM_026925040.2 mRNA downstream 4034 19642225 ~ 19648916 (+) True ctdspl3
XM_034308804.1 mRNA downstream 4711 19642902 ~ 19648916 (+) False ctdspl3
XM_026922030.2 mRNA downstream 14647 19652838 ~ 19659420 (+) True ndufs7
XM_026916844.2 mRNA downstream 38025 19676216 ~ 19691780 (+) True dazap1
XM_026916854.2 mRNA downstream 38029 19676220 ~ 19691780 (+) False dazap1
TU218488 other upstream 53925 19532081 ~ 19553522 (+) False si:ch73-40i7.5
TU218486 other upstream 53925 19550382 ~ 19553522 (+) False si:ch73-40i7.5
TU218227 other upstream 338225 19254957 ~ 19269222 (+) False adgrl4
TU217312 other upstream 1810828 17795445 ~ 17796619 (+) True G183549
TU217273 other upstream 1825634 17773713 ~ 17781813 (+) False ect2
TU218602 other downstream 57053 19695244 ~ 19700274 (+) True rps15
XR_004579107.1 other downstream 189795 19827986 ~ 19834414 (+) False tax1bp3
XR_003403385.2 other downstream 227607 19865798 ~ 19871463 (+) True ccl44
TU218923 other downstream 511780 20149971 ~ 20150894 (+) True G184979
XR_004579103.1 other downstream 1551595 21189786 ~ 21210539 (+) False wipf2a

Expression Profile