RNA id: XM_026947144.2


Basic Information

Item Value
RNA id XM_026947144.2
length 4837
RNA type mRNA
GC content 0.44
exon number 17
gene id ankrd24
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 24684609 ~ 24704908 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGTACCACTGCGCTGAACGTGTGAAACGTGTTTGGAGCGGCGTGTGCAGTAATACATCTCTACTCTGCTGCATTTAACCCTTTATAAAGCAGTTACATCCAAGTTTCCGCAAATAGTGAAGAAGAGTGGGTCTCTGAGTTCATCTTTCATTTGatTATACTCTCTACCAGATAATGAAGACTTTAAAAGCAAAGTTTAGGAAGACTGAGACTCAGACTGCACAGAGGGAACAAGTTAGGAGTCCTTTGCCCCCTACAACCCCAACCCTGCCTGGAGGGACCACAGCTCACAAGAGAAAAGCACCTCCTCCTCCAAAGTCTCCTCGACAGGGTACACAGCCTTCCCCAGACCTGCATCATGGCCCTACCGAGTGCTTAGTGCCAGACAGCTCTACTTCTCCTTCCCCAGCCCCCAAGACTCAACACTCATTTCCAGACAACCTTGCAGAGGATGAGGAAGTGTTTGAGGAGATTCGCAGGCTAAGGCTAGAAAGAGGACATCTACTACAGAAGATTAAGGCTCTGGAGCAGCAACAGAGCAGCACCACCACTGCACTGGAGGAGCTGAGCTCACTGAGAGAGTGTTTGAGAGAGGCAGAGGCAGAACGTGATTGCCTGGAAGTAGTGCTGAAGGAGCTGGGAGGTGTTCGGCTCAGCAGTACCACTGATGATATGCTTGACTTCCCTGGAACAAATAGGCTGCTGTCCAAGCAGTCAAAATGCACAGAAGCCGAGATGCCTCCTGCCCAAACAGAGAACTCATCTTGGGAGCAAATGAACAGTGTGGAGCAGCTCTGCAGGCAGGTGGAGGAGCTGACTGCACAGAATGCTGAACTGGTCCTCAAAGTGCAGatgcTGGAAATGTTTGAAAAGGATGACACAGACTTTCATAGCTCGGGTCTTGACTTTGTGCCCATGACTGTCTATGACACCTTAAAGAGAGAGTTTGAAAAGCTGCAGCAGCAATACACCAGAGCTGCTAAAAGCTCAAACACTGCAGAGGACCCTGGGTCTGAGAACAATCCTGAAGACATAGGTGAGGTGGAGTCCAAGGAGGAGGAGGCTTTAGCTAGAGAAATAGtaaagaaggaggaaaaacagaaaagcctAGAGCAACAGCTAGCCTGTGCCCATGCTGAGTTGgagaagctgagaaaagagatgCAACTGGGTATCGATTCTATGACTGCAGGTTTAGCAGTTAGCAATTCCAAAGCTGAAGAGAAGGGGCTGAGCTCAGACATACAGAAGTTGACAGCCCGGGTGCAGGAACTGGAGGCAGAGCTGGCAAACAAAGAGGTGGTGTGGAAGGAAGGGCTGAATGAGAGTGACAAAATCCAGCAgttgaagcagagagtggaagAGTTAGAGGAATCTCTACAGGTGAAGGAGAAAGAGGCACGAGATATGAATGAGTCAGTGGAGAGATTAAGAAAACGAATAAATGAGCTAGAGCAGGGCACTGGGGCAAGGTGTTTGGCAGAAGGGGAGGAAGAAGCACTGAATAAATTACAGGTGCGAGTGGAAGAGCTGGAAGCTGAACTAAGTAAGAGTATTCCTCGTGAGCAGCTGGATGAGGTGCAGCTCACCCTGGGTCTCCAGCTGGATCAGCTAGCTCGAGAGCGTTCTGAGATTTCCCTGCGACTCAATCAAGCTCTGCTGGATCTGGAGAGACTTTGCCCTCCACCTCACAGTGACAAAGATGACAGCGATGAAGAATACAAGGAAGAGCAGTCTGAGAGCTACCAGCCATCAAGTGCTTTGGAGTTGCCTGGTGGAAGAACTTTGAGGTCAGTGCAAGAAGAACTGGAGGTGACTAGCCAGACAGACATAGAAACACTGGATGTCTTGTGTGCTGGGGAAGAGGGCTGTGTTCAGGATGCCTTGCAGATGAAGGATGTGGTATCATTAGCCAAACACCGGGAGGCACTGTCTGCACTAACACAACAACTAGCTGAGACAGAAAATAAACTGGAGGCTGAGAGGGCACTTTGTGAACATGCTCATGCTGAACTGGCCAGGCTGAAAAGTGACCTGCAGGATGCACAACATGGCATGATCAGCAAGGAGGAACATGAAAGGATCAGGACTGAGCTGCAGCGTAGCCTAGAGGAGAGCCAGAGCGCTGTAGCAGCAGCCCGTGAGGCTCTGAGTGTTAAAGAGCTGGAGCTGAAGGAGCTGCAATCTCAGAAAGCTGTAGAACTGGATATGGTATCTAAAGAGGCCCACGAAGCCCAGCGCCTCTCACTTCAGGCTGAGATCAACACACTGACTGCCTGCCTGGCTGACCTTACACGCAAGCATGAGAAAACATGCACTGAGGTGTTCCAAGTGCAGAGGGAGGCTCTCTTCAATAAGAGTGAACGTCAGGTGGCCGAGGCACAGCTGCTAACGGTCCAGCAGCAGTTAGCAGACCTGCAGGCTCAGTCCAGCCACATCCAGCAACTGCACCAAGACATCCAGCACTCAAAGGGGCTTATCAAGGAGAAAGACCACAAAATCACAGAGTTGTCTAAGGATGTGTTCCGTTTGAAGGAGGCTCTAGGAGCTTTGACTCCACCAATGGGTTTATCTGCCTGCACTACTTCCTCTGGAATACCAGGACAGCAGTTGGCACTTCAGAACAGAGTATCTGCATTGACCCAGCAAATCCAGGACTGGGAGCGTAAGCACAAAACAGTGGTGGCCACGTATCGCTCTCACCTCCTAGCTGCAGTACAAGGTCGCATGGATGAAGAGGTGCAGGCTCTTTTGTACCAAATCCTCAGAATGACCCAAAATAACCAAAGCCATTAAAATATTTGCAATTTGCTTGTTCTTAAACTGACAGCAACATACATTTCAATGGCTAACTTTTCATGCAGTAATTATATCGGGGGAGTGAAACAGGGACTGAACTGACACTCTGCAATGCCATGGTGGCATTACATAAGTCAAACAGTTGTATGATTTTGGAATATGACAGAGATAGATAACCATATTGTGAGGCTTTATTAGTTCATTCCTTGCTAGAGCAGGatggtaatattattaatatcaatTTACACTAACAAATAGAGCGctgttttttatccatttttttttacaaagcttCAGGATTTGCTAATACAAGGTCACTTAAGGTTGGGAAGGTCatcttgaaaatgaaatgttattagTTATATTAATGATTACTAAATTGGTAACATCTTTATCAGGAGCAGTCCTTGCCGTAGGCACCTAGGGCAGTAACTTGCCAGGGGCGACACAGGCACATTGTGCTTTAATATAGGCGCATCTGAAATCATTACGTGCACCTTTGCCATCCTGTCCAGTTAAATACTGCTTCTTCTCGGTTGCGTCCTGCCACCTTACCCATGCCTCTCCTCCCCAACAGGTGGACCAGAACAGTGCAATAGAACAGTTAATCATCAGAACTATTAAAAACCAGCACAGGCTTTAGGTACCCAAAGGTCACCGTATCCCAACTTTCCAAGTGAACTTGCACTGAAGAATAGCATTCAGTAATTTAGAATAACCAGTGATATTAACAAAACCTTGACTTAGAAATGAGATCTTATAGGTCCATACTAAGAATTCCCTTTAACAAGAGATCATTGCCACATACACTAGGGCCACTTATTTTGTGTCCTTACTGACATCAGACATCTCCCATTCCATGACAACTTGTGATGGGTGAAGAATTGTTCTGAAATATGGGGCATCAAAAAAACCCTGTGTGGAGTTAACTGTGAACAGGTGTGTATGATTAGTGGTGACTGAGCAAAGTGTAGTCCTTGGTGGCCATGTCTGTAGGCCacggtgtgttctgggaaacagAGTTTCTTGTTGATTACCTGACAAAACTGCAGAAAAGACTTTTAACCCTGTTAAGACCATTTTGATCATATTATGTTCagtttttaatggttttattttaatgaacattttctcTTGACATTATTCTTAAACATATTTCACTTGACtatattaacaatataaaacattttttgtaaaattacgACTTGTTTCTGTGCAACCAGATGACTTTTAGTCCTGGAAGGTTCAGTTTAGTAACACAGTGCTTGTAGTTAACTTGTGACTAATATttaatgataatgttttttGACGACAGCTTCGATATTAACTTTCCACTGCACTCGAGTTTTTTCTAATGTTCCAGAATGTTTACGCTTCATAAGACCAGCAATTGCTGTAGCCCAAGAGCGATcattttttgtataattttgtaCACATAAAGCAACTACAGCTAACACATTTTGATCTTCTAACTAGATCCAAGAAAGCAGTTATGCTCAGTGCTTTtgcatgtatttgtgtttgatttGAGTAGTCTGTTCTAGGACCCAGGAAGTCCAGTCCTTGTCATTGTTACTTCAGTCCAATCCAGTCTGTGTGCTATATCATCATCTGGTACACCTGATTTAAGATGCTGCCAAATTGAATGGAACAGCTTCCTTCTGTTCACTTCATTTGtgcctccattttgtttttgtgattatATTTGTGATGATCTTTAAACTCTTGGTTGTGTCCCATCTGAACATTGCTAGCCTGGATTGcttcttatatatttttgtaaatacaaCTTgcattgttttgattttttttttcagtttagtaCCACTGGGCATGGGGCGTGACTGCCATTTATGTTGGtggtttgtttatgtttttaggTTTAGTTAGGGAGTTAGGTAAGTTTTTCATAAAGTTTTCTTTTATAAAGTTAGCCTGtagttatgtttatttttttggcctTGGTCACACCTGAAGTTCCACCCAGTTAGTGTAGCACATATCCTAATTGTCAAATACACATCTTTTTGTTCTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221689 lncRNA upstream 37967 24642759 ~ 24646662 (+) True G187286
TU221662 lncRNA upstream 94926 24589326 ~ 24589703 (+) True G187268
TU221659 lncRNA upstream 108396 24575015 ~ 24576233 (+) True G187265
TU221640 lncRNA upstream 116018 24563463 ~ 24568611 (+) False oaz1a
TU221648 lncRNA upstream 132315 24525684 ~ 24552314 (+) True G187258
TU221707 lncRNA downstream 1259 24706167 ~ 24707504 (+) True G187294
TU221722 lncRNA downstream 31701 24736609 ~ 24737071 (+) True G187309
TU221735 lncRNA downstream 68857 24773765 ~ 24774186 (+) True G187316
TU221673 lncRNA downstream 98863 24803771 ~ 24806565 (+) True G187276
TU221763 lncRNA downstream 226737 24931645 ~ 24932046 (+) True G187340
XM_026947129.2 mRNA upstream 16129 24656904 ~ 24668500 (+) True tmem59l
XM_026947141.2 mRNA upstream 31439 24649027 ~ 24653190 (+) True rrp36
XM_034308773.1 mRNA upstream 115986 24563400 ~ 24568643 (+) True oaz1a
XM_026947294.2 mRNA upstream 126635 24554662 ~ 24557994 (+) False amh
XM_026947252.2 mRNA downstream 38203 24743111 ~ 24765317 (+) False LOC113547059
XM_034308629.1 mRNA downstream 38204 24743112 ~ 24765317 (+) False LOC113547059
XM_026947251.2 mRNA downstream 38206 24743114 ~ 24765317 (+) True LOC113547059
XM_026947171.2 mRNA downstream 104921 24809829 ~ 24913123 (+) False vps13c
XM_026947172.2 mRNA downstream 104921 24809829 ~ 24913123 (+) False vps13c
TU221326 other upstream 473904 24207893 ~ 24210725 (+) True glrx2
TU221328 other upstream 473904 24207893 ~ 24210725 (+) False glrx2
trnaq-uug_6 other upstream 737566 23946992 ~ 23947063 (+) True trnaq-uug_6
trnaq-uug_5 other upstream 745741 23938817 ~ 23938888 (+) True trnaq-uug_5
trnaq-cug_12 other upstream 746249 23938309 ~ 23938380 (+) True trnaq-cug_12
trnar-acg_9 other downstream 801515 25506423 ~ 25506495 (+) True trnar-acg_9
TU222375 other downstream 826837 25531745 ~ 25593503 (+) False LOC113523924
TU222713 other downstream 1480954 26185862 ~ 26212109 (+) False polr2l
TU222716 other downstream 1502034 26206942 ~ 26210010 (+) True G188164
TU222712 other downstream 1505651 26210559 ~ 26212109 (+) False polr2l

Expression Profile