RNA id: XM_034308646.1


Basic Information

Item Value
RNA id XM_034308646.1
length 10156
RNA type mRNA
GC content 0.46
exon number 75
gene id vps13c
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 24809829 ~ 24913123 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGTGGCGTCTGTGTCCCGTGTCCTGGTCCGCGATGGTCTTCGAGTCTTTGGTCAGTGATGTCCTGAACAGGTTTATAGGCGACTATGTCGAAAATCTTGACAAATCACAGCTGAAGATCGGTATTTGGGGAGGTGATGTGGTTCTGGAAAACCTAAGAGTGAAGGAGAACACTTTGAGTGAACTGGATGTACCATTTAAAGTGAAGGCTGGGCAAATTGGCAAGCTAACTCTAAAAATCCCCTGGAAGAATCTCTACAGTGAAGCTGTGGTTGCTACCTTGGATGGTCTGTATCTCCTAGTAGTTCCTGAAACAACGATCAAGTATGATGCAGCTAAAGAAGAGCGCCATCTCCAGGAGGCTAAACAGAGGGAGCTTCAACGCATTGAGGAGGCCTTGCTACTGGTGGCACGCAGAGACTCTCAAGTCGGAGAGTTTGTGTTTAATCTGGAGAGTTATGTGTATAAGGACACACGTGACAAAGGACGTaaacataaaaatcacaaaaaacacTTAAGGATGTATAAAAAGCATGACCAAAAACCAGAGAAGCCTCTGGATGAGAAGAAAGACACATTTGCTGAGAAACTGTTCacacaaataatcaaaaacCTTCAGGTCAAGATCAGCAGCATTCACATCAGATATGAGGATGATGTTTCGGACCCTCAGAAGCCTCTTTCCGTGGGTGTGACTCTATCTGAACTCAGCCTACAGACAGCAGATGAAAACTGGAGGCCTTGTATTTTAAATGAAGCTGTCAAAATTATCTACAAGCTGGGTAGTTTGGAGTGTCTGTGTGCCTACTGGAATATTAACAGCCCTATCTTCTACAGAGACCCTTGGGAGGAGATAGTGGACAAACTAAAAGCAGGAATCAGCAGCAAAGATGAAGAACTGAAAGGCTATGAATATAtttTCAAACCCATTTTTGCTTCTGCCAAGATCTGCATCAACCCAAATGCTGATGTTGAGCTGAAATCACCCAAAGCAAAGTTGCACCTGGAAGTGCAGAACATTGCTATTGAATTTAACAAGCCACAGTATCTGTCTGTGGTGGAGCTGTTGGAGTCAATAGACTGCATGGTGAAAAATGGTCCCTACAGGAAGTTCAGACCAGATGTCCCTGTAAACAAACATGCCAGGCAGTGGTGGATGTATGGCATCAACAGTGTGTTGGAGGTGCACATTAGGCGTTTTAACCAGATGTGGAGCTGGACGCATATCAGAGGGCACAGACAAAGACTTAAAGCCTACAAGATGGCATACAAAGCCAAACTGACTCACAGCAAACTCAGGGaagacacagaaaaacagatcCTGgAACTGGAGAAAGTTCTAGATGTGTTCAACATCACATTGGCCAGACAACAAGCACAGATGGAGGTGGTTCGATCAGGTCAGAAGCTTACTGCcaaaaaggcaaaacaaaacCACGGAGGAGGTGGATTATTCAGTGGCttctttggaaaaaaagaaagaaaaaagaaagaccaaGAAGAGGAGGACAAACAGCCAGAAAGTATAGATGCTGTCATGACCACCGAAGAGAAGACCAAGTTATATACAGCCATTGGCTACAGTGAGAATTCTCCCAACCTGGCCTTAcccaaaaattaCATAGCAGTGATCGTAAACTTCAAGCTCCTACAGACATCAGTAACTGTGCGTGAGGAAGCCAGTATTCCAGAGATTCTTAAAGTGCAGATGATTGGCCTCAGCACCACCATCTCCCAAAGACCTGGAGCACAGGCTATAAAAGTGGAGGCCAGTCTGGAACATTGGTATGTGactgggctacagcagcagggCATTACACCGTCTCTCATAGCATCTGTGGGAAACTCAAACTCCTCTCTGCTAAGTGTGCTGTTTGAGCTTAACCCAGAGGACACTGCAGTGGATCAGCTACTCCATGTCCACTCTCAACCTGTGGAAATCATCTATGATGCACTGACAATTAACAGCTTAGTAGAGTTCTTTAAAACGGCTAAGGGTGTGGACCTGGAAGTAATCACATCAGCCACACTCAGCAAACTGGAGGAGATAAAGGAGAAGACAGCCAGTGGTTTGTCTCATATTATTGAGACACGGAAGGTTCTGGAGCTGAAGATTGACCTGAAGCCCTCCTACCTGCTGCTGCCCAAGTCAGGTTTCTACCATAGCAAATCAGACCTCATTATCATAGACTTTGGTAGCCTGCAACTTAACAGCATATACCAGAGCAGTCCTGAACAAGTATCTGCTAGTTTTTCCTCAGTAGAAGAGATCATGGACAGAGCATATGAGAGATTCTCATTGGAGTTATGCAGTGTGCAAGTTCTCTACAGCAAatcagGTGACATGTGGAAAAGTGCTCATATGCAGGGTTCATCCAACCAGCACATTCTGCAGCCCATGGACTTCACTCTGGAGCTTGCCAAGTGTATGGTGGAGAAAGACATACGCATGCCTAGGTTTAAGGTCACTGGGGAACTGCCATTACTGCATGTGAAGATTTCCGATCTGATGATGCAGGGGGTTGTAGAGCTGGTTGACAGTATTCCCCTTCCCCATGTTTCTTCCACACCGCCCTCCACCCCTAATCAGAAGGCTATGTCAATATCATTAGCAGATACCAGGCCGAAGGTGCTGAGTGTAGATCCATCAGCATTACCGTATTCCATGGTATCAGATTCTGAGGAGGAGACTCCTGAAAGGTATCTTAATGAGGATGCCCAGAGATTAGCTTTGGAAGAACTGACGGATGttcattttacatttgaaaTCAAAACAGTGCTGTTGGAGCTCTTGTGTCAGGATGCTCAGGAAGGCAAAATCTTGGCTTTAAATGTGTCTCAGTTGGGTTGTGAAGGCAAGATGAGGACTTATGACCTCACAGTCAAATCCTACTTGCACAAGATTAGCCTTGATTACTTTGGGATGAGAGatgcTCAGAATCAGCCACTTCATCTAATTACCTCATCAGACAAACATGGATCTGATCTGCTGAAAATTGAGTACATTAAAGCCGATGTGAGCGGACCCAGTTTCCAAAGCGTCTTTGACAATACAGAGCAGGTGCTAAAGGTGGAGTTTTCCTCACTGGAATTCCTTCTCCACACAAAAGCCCTATTGTCTACCATTAACTTCCTGAATAGAGCAGTGCCAAAGTTCACAGCTTCTAAAGAAAGAGACATCAAGAGACCAGCTGATAGGGTTACAACAGGGAAGACAGTATCTACAGGTTCAAAGGACTCAGGGGTAGTCAGCTTTAAGCTTTTCGCCATGCTGGGTTCCTTTGGAGTGACCATCTGTGATGACAGAAGTAGCATTGCAGATATCCAAATTGAAGGGATTGATGCCTCTCTGGTTGTCCAGGCCAAAGAAACAGAGGTGTTTGCCCGTCTGCGAAACGTTGTAGTGATAGACGTTGATACGAAAACCATACATAAAAAGGTGGTGTCTATTGTGGGTGAGGAAGTATTTAGCTTCAAGCTGAGTCTGTACCCTGGAGCCACAGAAGGAGCGGGTTACTCTGACACTTCAAAAGTAGACAGCAAAGTCACTCTGAGACTAGGCTGCATCCAGATCATCTACTTGCACAAGTTCCTTGTATCTCTTCTGGACTCTTTTAGCAATCAATACCCCTCTGCTGATGAGACATATGTGGATAACTTCCAGGCAGCCAAGAAGGCTATAAGCATTGCCACAGCACAGGCAGCGGAGAAAGCAGCTGCCAGTGTGAAGGACTTCGCTCTAAAGAGTTTTAGACTGTCAGTGGACATCAAACTGAAGGCCCCACTCATCATCATCCCTCAGTCTTCCATGTCCCAAAATGCCTTTGTGGTGGATCTGGGTCTCATTACTATGAGCAACACCTTCTCTCTGACACCAGCTAAGGGTTTTCCTCTCCCAGCTGTAGTGGAGACCATAGATGTTAAACTCACCCACCTCAAATTATTAAGAACAGTTCTAAGGCATGAGGCACCTCAGCCACACTTGGAAATTCTACAGCCAATTAACCTGGAGTTGTTGGTTAAACGCAATCTGGCCGCCTCCTGGTTCACAAAAATCCCTGGAGTAGAGGTCAAAGGATTGCTAAAATCCATGAATATCACTATTGGTTGTGAAGACCTTTGTGTTCTGATGAGGATTCTAGCAGAAAACACTGAAGAAGGTAACAGAATGGCATCTTCTGACACAAAGAAACCCACAGTTGAAGataaacCTGTAACAAATGAAGCACTCAAAGAGACACTTCCTGTGGAGACAGAAAGCCACCCAGCAATTACCAGTGGAAACTTAAGTGAAAATGTTGTCAGTGTTCTCCTCAAGTTTGAAATCATGGAGGTTCTGCTCACACTGAATAAGCCAAAGAATGGGTTGGAGTGTCCATTTTTGGTCTTGCATGCAGCTGAGCTTGGAATTGACACCAAAGTTCACAAATTTGACATGGTGGCCACCACATACATCAAGACCATTTCTGTGAAGTGCCCAGACATTCCAGATTTACATGGTGAGCCTGTCTGCATCCTGAGCTCCTCAGCAAAACAGGGAGCTGAACTCCTCAAAGTAGAGTATTTTAAGGCTAATCGTGATGCGCCTAATTTTTCTACCATTTTCGAGAATACACAACAGAAGATGAAAattattttctcttctctggACCTGACTCTGCATACTGAGGCTCTTCTTTCTATCATGGACTTCATGTCTACTATCCTGTCCTGTAGTAGCTTGTCCTCAcctgagaaagagagcaagattAATGAAGGAACAAAAGCTACCCCAGCCAAATCCATGAGGTGCCATTATGAAGGAGACATCATTGATCTGAAAATCCTTGTGCAGCTGGGGGCCTTCAACATGTTACTATGTGACCAGCACTGCAACATTGCTGACATGAAGATTCGGGATCTACATGGGTCTCTCTTGATGAAGGAAAGTGAAACACACATGTCTGCTAGACTGCATGATTTTGTTGTCATTAATTTAGACCCAGAAGCAGTTCACAAAAAGgTTGTCTGTATTGTGGATGATGAAGTATTCAGCTTTAATATGAGTCTAACCCCTAAAGCCACAGAAGGTGAGGGATACACAGACACCTCAAAAGTGGATGGAAAGGTCAAGCTCAATGTGGGCTGCATTCAAGTAGTCTATCTACAGAAGTTTGTCATGATATTGGTGAAATTCAGTAATAGCTTTCAAATGGCCAAGGAGGCTTTAAGTGTGGCCACAGCACAGGCAGCGGAAAAAGCAGTGTCCAGTGTAAGGGACTTTGCTCAGAAGAGTTTCAGAATCTCCATGGACATTAGACTAAAGGCCCCACTCATCATCATCCCTCAGTCATCCATGTCTCACAATGCTGTGGAGGTTGACCTAGGTCTCATCACTGTGCGGAACAGCTTCTCTCTGCTTCCAGTAGAGAATTGTCCATTGCCTGCTGTCATAGATAACATTGACCTGGAGCTAACCCAGCTTAAGCTGTCCAGAATCTTTATGGAGGAAGATGTAAATAAACCTAGTTCTGAGCTCCTACAACCAGTGAACCTGGTCCTGTCGGTCAGACGTAACCTTGCCGCTACCTGGTACCATAAGATGGCTGCCCTTGAGGTAGATGGAGATCTGAAGCCCATGGAAGTAGCTTTGAGTCAGGATGACCTGGTTCTCTTATTAAAGATTCTGATGGAAAACATTGGAGAGGCCAGCAGCATTCAACCATACATCAGCCCAGATCCAGGAATAAAACAGGCAAATGTGCCTGCCAGATCTTGCACACATAATGtctCTGAGAATGTTGTAGGAAGACAGCCAGAGAGCAAATCAGCAGAGAATGAACTGGTGGAGACTGTGAATTTCAGTTTCAATGTTGAGTCACTTGGTCTGGTACTGTACAACAACGATCCCACCCAGCCTGGTGTGCATCATGAGCGTTTGTGTATAGGAGCGTTTATGTTACATAAGATAACTGCTTCTGGTAAGTTGTTCAATGACAGCAGTCTGGAGGTTTCTAGTATTCTCACCACCTGCACCCTAGATGACAGGAGGAGCAGCCTTGAGCGAATCACATCCAGAATGCTGAAAAAGCGTGATGACAGCTCAGATGCCATGATTGACTTGACATACTCACAGAACAGAGATGAACGCTCTGTGGTAGCTGTGTTCCAGAAACTGTATCTCTGTGCCAGCATGGAGTTTCTCATGGCTGTGGCTGACTTCTTCATCCATGCTCTGGCCAAGTCCCAGGGCACAGTGTCAGACAAACCAAGACCATTCCCACGCAAACAGATCTCAGAGCAAATGGCCCAGGGTGAACTGAATGCAGCCACAGCCCAGAAGACCATGCTGCGTGCCATTGTGATAGATCCGGAGGTGGTGTTTGTGGCAAATCTAATGAAAGCAGAAGCTCCTGCTTTAGTGGCTTCTTTCCAGTGTGATTTCAGTCTGTTCTCTGAAGAGGCAGCTCAGGTCATGAAAGTCAACCTTAAGGGTCTCAAAATTCTTGCCTGCCCATTCATAAGGAACAAGGACAGCAAGGCCGTAACCactGTGCTTAGGCCATGTTCTGTTCTCCTTGAAACCAAAATTTCAGCCAGTGGTCCATTCACTGGCTCTGTCACTGTAGATGAAGTTATTGTAAAAATCTCACCAATCATCCTCAACACTGTCCTGACCATCACTGCAGCCATGACCCCTAAGCCCAAGGAGGAGGTGGTCAATCAGAAGCCTGTTGAGCTGAGCACACTGTGGGCTGTAAGGGACATCTACTCCTGCAACTTCTGGTTCCTGGATGTTGAGACTGCAACTGAGGTGAATGAGAGATTCCAGGAGGTACACAGCAGCAAAAAGGTCGAGACATTTAGAGCTGATGTGAAGGTGGTGCAGGTGACTCTGGAGTCCGGCCAGGGCCACCACACTGTTCCCCTGCTGCTGGCTGAGTCGTCACTGTCTGGCTGTGCACAAAACTGGTCTTCTTTGCTCAGTGTGTCTGCAGATATGACACTAGAGGTGAACTATTTTAATGAGTCTCATGCCGTTTGGGAGCCCCTCATAGAGAGAGTTGATAACGGCAAACGCAGATGGAACCTTGGAATTGAGGTAAAGAATAACCCTGTTTGTGATAAGAGCCCTATTCCTGGTGATGACTTCATTGTGCTGCCTGAATCTTGCACATCCATCAACATCTGCTCCAAAGACACCATGAACATCACATTGTCCAAATGCTGCCTGAATGTCTTTCACAACCTCACCCAGGCTTTCTCAGAGGGCACTGTCTCCACATTTGATCATTCTCTGAAAGAGAAAGCTCCATTTACTATCCGGAATTCCCTTGGCGTGCCACTAATCATCCAGCATAGTGCTAATCTGCGCTTGGCTGACTCACCATCCCAAAGTAAAGTGCATGAAGTAGGAGTGGGGGAATCCTTGGATTTGGAATATTCTATATTTGAATTTTCAACACGAGTAAAATTTTCAACGCTGCAGAGACAGGAGAGCTGCCTTTTCAACCTTAGCATAGTGCCCACAGGCTACAGCGAGATCTCTAACATTCCTGTGGATAAGCCAGGCCGGAGGCTCTATAATGTGCGGAAATCCATGCTTCAGGAGTCTGTATCTGTGCTACTGCAGAACAGTGCCTCAGAAGGCAACAAAGTCATCACTGTGCGATCCCCACTACagATTAAGAATCATTTCTCAGTGCCTTTTGCCATTTTGAAGTACTCCCCGGATATAGGAGGGCTGGTGAATGTCGGAGTTGCTGAACCAGAGAAAGAGTTTCATGTCACGCTGGACTCTTACAGATGTCACTTGTTCTTGATGCCTGTTGGACCTATTGAGGGCCAGTATCATGAGTCGACTACATACATTGCATGGAAGGAGCAGGTTCATGTGAGTTCAGAGGTGCGTTCCTTGCTGCAGTGCCCAGCAAAGGACAGCAGCTTACGGCCAGTTGTCATCAACACACTGGCAGTGCCAGACAACCTGTGTCACATTGATAGCCACAGTGAAGAAGAATGGGACCCTGCCtacattatccacctgcacccAGCTGTTTCTCTTCGAAACCTGCTTCCATACTCCATCCGCTACCTAATGGAGGGTTCAGCTGAGTTTGAAGAGCTACATGAAGGCAGCACAGCTGATCTGCTGAACGTGAGCGTCAGTGGTGAAATTATGGAGTTAGTGCTTGTGAAGTATCAGGGCCGCAACTGGAACAGCCATGTCAAGATCATCCCAGACATGCCGGAGTTGTTCCCTGTCTGCTTTACTAGCGACACCAGCGAGAAGCTCACTGTAGATGTGTATGCACACGTGAGCCACATGGCTGGACAGCTCATCATTTCCATCTTCAGCCCATACTGGATCATAAACAAGACAGCCCGTGTGCTGCAATACCGGGCTGATGACATCTATGTCAAACACCCTTCTGATTTCCGAGATGTGATCCTGTTCTCCttcaagaagaaaaacattttcagcaagAACAAACTGCAGCTTTGCGTGTCTACCAGTTCCTGGTCAGATGGTTTTTCTCTGGATACAGTGGGCAGTTATGGGTGTGTCCGTTGCCAAGATAAAAACATGGACTTCTTGgtggaAATCAGTATACAATTAAGCAGTTTTAACTTAACACGGATTGTGACTATTAGCCCTTTTTACACTCTGGTGAATAAATCCTCCTTTGAGCTAGAAGTAGGGGAGGTGCAAAATGACAACAGTAATATCAGCAACAAGTGGCACTACATCTCCTCCACAGAGTGTTTGCCTCTGTGGCCAGAGTCTGGTACAGAGAAGCTGTGTATACGGGTAGTAGGTTCTGAATTGCCCTCCAAATCCTTCTTCTTTAACAAGCAAGATAATGGAACTCTGCTTTGCATGGAGCAGTATGGAGGCATCATAGTGGATGTAAACATCTCAGACCACTCCGCTGTCATCAGCTTCACTGATTACTATGATGGAGCAGCTCCTGCTCTGCTGGTGAACCATACTCCCTGGGTTACCATCACAATCAGACAGAGTGGCTGTGAGGCATCTTGTGAGCTGAAGCCAGGTGAGGTTCAGCTATTTGTGTGGGACAATCCTGCAGGGGTGCGGAAGCTATGCTGGACATGTCAGGGCCACAGCGGAGAGCTAGACCTGATcaagGACCAGTGTGGGCAGTTTGCGTATGAGAGTCTGACTCAGGTACACTGGGTGTCGTTCCTCGATGGCCGACAGCGCATCTTGCTTTTTACTGAAGACGTGGCTGTGGTAACCAAAGCTAGCCAAGCTGAAGAGCTGGAGCAATTCCAACAGGAAATGAACATCTCTGTACAGAACCTGGGCTTGTCCCTCATCAACAATGACAATAGACATGAAATAGCATACATGGGCATTACCAGTTCTGGTGTAGTTTGGGAAATGAAACCAAAGAACCGCTGGAAGTCTTTTAACCATAAGAACATCAGTCTTTTGGAGAAGGCCTACCAGAACCACCTCAGTGGCAAGACAGAGCCAGGCTGGTTGAAGCTGGAAACAGGGCTTGAGGTGGACTTTACAAGGATGCCCATGTTGATGAGGCACCCGTACTCTTGCATCATCCGGAGGAACTTTCTGGCTGGTATCCATGTGGAGCTAAAGCAGTCACCACACCAAAGGAGCCTTCGAGCACAGCTTCACTGGCTGCAGGTGGATAACCAGCTAACTGGAGCCATCTTCCCAACAGTATTTCACCCTGTACCCCCTCCCAAATCAATTGTTCTGGACTCAGAGCCAAAGCCCTTTATAGATGTCAGCATAATTACACGATTCAACGAACACAGTCAAGTAATGCAATTCAAgTACTTCATGGTACTAGTGCAGGAGATGGCAGTAAAGATGGATCAGGGATTTTTGGGGGAGATCCTCGCTTTCTTTACTCCCACCACCAACATCCAGGCTGACAAGCAGAAGAGTAAGCTGATTGAGAAAGATCTGGATTCACTGCAAGCACAGCTGATGGAGAGCTCCATTACAGATACTTCAGGCCTCAGCTTCTTTGAGCACTTCCACATCTCTCCCATTAAAgggctcaaaagtatttggacaaagaagttaattgaccaggtgcggtctaTTCCCTCGTTACTACAAGACAAATGAagtagataaaaggtctggagttgatatcaggtattgagttggcatttggcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221673 lncRNA upstream 3264 24803771 ~ 24806565 (+) True G187276
TU221735 lncRNA upstream 35643 24773765 ~ 24774186 (+) True G187316
TU221722 lncRNA upstream 72758 24736609 ~ 24737071 (+) True G187309
TU221707 lncRNA upstream 102325 24706167 ~ 24707504 (+) True G187294
TU221689 lncRNA upstream 163167 24642759 ~ 24646662 (+) True G187286
TU221763 lncRNA downstream 33228 24931645 ~ 24932046 (+) True G187340
TU221986 lncRNA downstream 89462 24987879 ~ 24988093 (+) True G187527
TU222026 lncRNA downstream 222830 25121247 ~ 25122115 (+) True G187563
TU222076 lncRNA downstream 277391 25175808 ~ 25176089 (+) True G187612
TU222133 lncRNA downstream 373859 25272276 ~ 25272599 (+) True G187668
XM_026947252.2 mRNA upstream 44512 24743111 ~ 24765317 (+) False LOC113547059
XM_034308629.1 mRNA upstream 44512 24743112 ~ 24765317 (+) False LOC113547059
XM_026947251.2 mRNA upstream 44512 24743114 ~ 24765317 (+) True LOC113547059
XM_034308497.1 mRNA upstream 104921 24684634 ~ 24704908 (+) True ankrd24
XM_026947178.2 mRNA downstream 17199 24915616 ~ 24930743 (+) True rcn1
XM_026947229.2 mRNA downstream 51997 24950414 ~ 24984205 (+) True zdhhc13
XM_026910019.2 mRNA downstream 259988 25158405 ~ 25170812 (+) True immp1l
XM_034308686.1 mRNA downstream 260366 25158783 ~ 25168182 (+) False immp1l
XM_026910017.2 mRNA downstream 260444 25158861 ~ 25170812 (+) False immp1l
TU221326 other upstream 599104 24207893 ~ 24210725 (+) True glrx2
TU221328 other upstream 599104 24207893 ~ 24210725 (+) False glrx2
trnaq-uug_6 other upstream 862766 23946992 ~ 23947063 (+) True trnaq-uug_6
trnaq-uug_5 other upstream 870941 23938817 ~ 23938888 (+) True trnaq-uug_5
trnaq-cug_12 other upstream 871449 23938309 ~ 23938380 (+) True trnaq-cug_12
trnar-acg_9 other downstream 608006 25506423 ~ 25506495 (+) True trnar-acg_9
TU222375 other downstream 633328 25531745 ~ 25593503 (+) False LOC113523924
TU222713 other downstream 1287445 26185862 ~ 26212109 (+) False polr2l
TU222716 other downstream 1308525 26206942 ~ 26210010 (+) True G188164
TU222712 other downstream 1312142 26210559 ~ 26212109 (+) False polr2l

Expression Profile